Wall clock time and date at job start Tue Mar 31 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00213 * 2 1 4 4 C 1.52992 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47062 * 65.00018 * 4 3 2 6 6 C 1.37101 * 119.99712 * 90.00058 * 5 4 3 7 7 H 1.08001 * 120.00197 * 305.03231 * 6 5 4 8 8 C 1.38955 * 120.00229 * 125.03588 * 6 5 4 9 9 N 1.31410 * 119.99577 * 336.03848 * 8 6 5 10 10 Si 1.86791 * 120.00008 * 156.03425 * 8 6 5 11 11 H 1.48505 * 109.47024 * 90.00221 * 10 8 6 12 12 H 1.48506 * 109.47065 * 209.99882 * 10 8 6 13 13 H 1.48496 * 109.47463 * 330.00057 * 10 8 6 14 14 C 1.34772 * 120.00434 * 269.99868 * 5 4 3 15 15 O 1.21297 * 119.99691 * 4.67188 * 14 5 4 16 16 C 1.50696 * 120.00318 * 184.66971 * 14 5 4 17 17 H 1.08999 * 109.47195 * 46.81021 * 16 14 5 18 18 C 1.53000 * 109.47097 * 286.80555 * 16 14 5 19 19 C 1.50703 * 109.47060 * 166.80803 * 16 14 5 20 20 C 1.34509 * 125.78696 * 239.99937 * 19 16 14 21 21 C 1.41377 * 106.84191 * 179.97438 * 20 19 16 22 22 C 1.34516 * 106.84192 * 359.97438 * 21 20 19 23 23 C 1.50702 * 125.79298 * 180.02562 * 22 21 20 24 24 O 1.34303 * 125.79075 * 59.68797 * 19 16 14 25 25 H 1.08991 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46726 * 300.00045 * 1 2 3 27 27 H 1.09000 * 109.47235 * 59.99418 * 1 2 3 28 28 H 1.09000 * 109.46836 * 60.00019 * 3 2 1 29 29 H 1.09003 * 109.47214 * 300.00007 * 3 2 1 30 30 H 1.08999 * 109.47771 * 305.00206 * 4 3 2 31 31 H 1.09001 * 109.47612 * 185.00042 * 4 3 2 32 32 H 0.97001 * 119.99675 * 175.74379 * 9 8 6 33 33 H 1.09002 * 109.47288 * 305.70155 * 18 16 14 34 34 H 1.09004 * 109.47018 * 65.70001 * 18 16 14 35 35 H 1.08999 * 109.47037 * 185.70041 * 18 16 14 36 36 H 1.08001 * 126.58156 * 359.96515 * 20 19 16 37 37 H 1.08002 * 126.58368 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.46590 * 90.00200 * 23 22 21 39 39 H 1.09003 * 109.47125 * 210.00381 * 23 22 21 40 40 H 1.08996 * 109.47317 * 330.00562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2683 1.3462 -2.3385 7 1 3.5342 2.0432 -2.7147 8 6 5.5084 1.2421 -2.9567 9 7 6.5423 0.7901 -2.2833 10 14 5.7056 1.7447 -4.7449 11 1 6.0673 3.1832 -4.8177 12 1 6.7788 0.9321 -5.3720 13 1 4.4277 1.5185 -5.4665 14 6 4.0959 -0.7760 -1.3333 15 8 3.7576 -1.4734 -0.4003 16 6 4.6495 -1.4078 -2.5844 17 1 5.5523 -0.8788 -2.8897 18 6 3.6073 -1.3251 -3.7015 19 6 4.9814 -2.8526 -2.3130 20 6 6.1981 -3.4148 -2.4261 21 6 6.0538 -4.7773 -2.0775 22 6 4.7575 -4.9661 -1.7717 23 6 4.1345 -6.2687 -1.3401 24 8 4.1137 -3.7958 -1.9116 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 7.3929 0.6591 -2.7308 33 1 2.6711 -1.7653 -3.3584 34 1 3.4419 -0.2811 -3.9676 35 1 3.9665 -1.8700 -4.5745 36 1 7.1103 -2.9203 -2.7258 37 1 6.8346 -5.5232 -2.0594 38 1 4.1823 -6.3520 -0.2544 39 1 3.0932 -6.2974 -1.6613 40 1 4.6773 -7.0986 -1.7924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837232779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:35 Heat of formation + Delta-G solvation = -59.457598 kcal Electronic energy + Delta-G solvation = -23529.874544 eV Core-core repulsion = 20119.221876 eV Total energy + Delta-G solvation = -3410.652668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85312 -38.68414 -36.99021 -34.55761 -33.41675 -32.46046 -31.81204 -30.45982 -28.86541 -25.88238 -25.73519 -24.84628 -23.23397 -21.52926 -20.99292 -19.77529 -19.04126 -17.03822 -15.92174 -15.70045 -15.50314 -15.39465 -14.98875 -14.67967 -14.41067 -14.12107 -13.54247 -13.39785 -12.79666 -12.78041 -12.63007 -12.38387 -12.06760 -11.90849 -11.85258 -11.65400 -11.44670 -11.16936 -11.11255 -11.10469 -10.79684 -10.61744 -10.46937 -10.34904 -10.22209 -9.17020 -9.04687 -8.76049 -8.14577 -7.53521 -7.27389 -6.44713 -4.28095 2.45134 3.07183 3.18600 3.20946 3.28900 3.65879 4.03530 4.22037 4.48580 4.79062 4.87727 5.25400 5.48022 5.61687 5.65097 5.69499 5.71839 5.77709 5.89260 5.94382 5.95985 6.02687 6.08321 6.16759 6.24205 6.32797 6.46360 6.50322 6.59661 6.70105 6.82505 6.89132 6.95263 7.12432 7.24478 7.36823 7.83406 7.97653 8.01487 8.62616 8.88633 9.62370 10.09146 10.55301 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.008765 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.810625 B = 3193.671971 C = 4826.107272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.456 5.456 6 C -0.340 4.340 7 H 0.080 0.920 8 C 0.051 3.949 9 N -0.849 5.849 10 Si 0.890 3.110 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.528 3.472 15 O -0.575 6.575 16 C -0.037 4.037 17 H 0.147 0.853 18 C -0.136 4.136 19 C 0.046 3.954 20 C -0.228 4.228 21 C -0.214 4.214 22 C -0.039 4.039 23 C -0.065 4.065 24 O -0.154 6.154 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.272 0.728 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -4.278 -1.274 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.177 5.177 6 C -0.468 4.468 7 H 0.098 0.902 8 C -0.156 4.156 9 N -0.485 5.485 10 Si 0.715 3.285 11 H -0.200 1.200 12 H -0.202 1.202 13 H -0.186 1.186 14 C 0.316 3.684 15 O -0.456 6.456 16 C -0.058 4.058 17 H 0.164 0.836 18 C -0.193 4.193 19 C -0.005 4.005 20 C -0.247 4.247 21 C -0.233 4.233 22 C -0.090 4.090 23 C -0.122 4.122 24 O -0.050 6.050 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.735 -4.715 -0.724 6.721 hybrid contribution 0.415 0.643 -0.888 1.172 sum -4.319 -4.072 -1.612 6.151 Atomic orbital electron populations 1.22636 0.83326 1.01807 0.98737 1.88219 1.17447 1.27225 1.95003 1.23041 0.96265 0.84832 0.98718 1.21367 0.90466 0.98630 0.90086 1.43052 1.61401 1.03649 1.09634 1.19180 0.97922 1.23539 1.06137 0.90198 1.25574 0.94462 0.95922 0.99600 1.70125 1.00500 1.42557 1.35274 0.86550 0.78946 0.79135 0.83896 1.19998 1.20174 1.18628 1.19883 0.78338 0.82501 0.87661 1.90574 1.52356 1.62188 1.40499 1.20398 1.03955 0.85212 0.96249 0.83646 1.21691 0.97662 1.03707 0.96254 1.22380 0.87994 0.90783 0.99386 1.21433 0.98022 0.94530 1.10752 1.21375 0.95966 0.97119 1.08827 1.22257 0.92182 0.87623 1.06902 1.20154 1.00935 0.89485 1.01611 1.84036 1.38573 1.16502 1.65858 0.90464 0.95186 0.94945 0.94360 0.93614 0.91524 0.90109 0.91798 0.93124 0.89676 0.93380 0.84092 0.84431 0.90714 0.91102 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.71 9.30 -47.91 -0.45 -8.16 16 3 C 0.05 0.96 6.28 37.15 0.23 1.19 16 4 C 0.12 2.63 5.82 -4.04 -0.02 2.61 16 5 N -0.46 -11.41 2.38 -114.81 -0.27 -11.68 16 6 C -0.34 -8.30 7.22 -14.93 -0.11 -8.40 16 7 H 0.08 1.89 7.94 -52.49 -0.42 1.47 16 8 C 0.05 1.22 3.07 -17.47 -0.05 1.17 16 9 N -0.85 -21.77 11.78 55.50 0.65 -21.12 16 10 Si 0.89 18.42 28.90 -169.99 -4.91 13.51 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 14 C 0.53 13.95 6.23 -10.99 -0.07 13.88 16 15 O -0.57 -16.59 14.30 -17.72 -0.25 -16.84 16 16 C -0.04 -0.89 2.23 -92.92 -0.21 -1.10 16 17 H 0.15 3.62 4.28 -51.93 -0.22 3.39 16 18 C -0.14 -2.88 8.91 37.16 0.33 -2.55 16 19 C 0.05 1.08 5.34 -35.62 -0.19 0.89 16 20 C -0.23 -4.85 10.78 -39.71 -0.43 -5.28 16 21 C -0.21 -3.99 10.81 -39.70 -0.43 -4.42 16 22 C -0.04 -0.74 7.32 -35.62 -0.26 -1.00 16 23 C -0.07 -0.88 10.42 36.01 0.38 -0.50 16 24 O -0.15 -3.55 10.12 -6.35 -0.06 -3.62 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.58 7.49 -51.93 -0.39 1.19 16 31 H 0.08 1.66 8.04 -51.93 -0.42 1.25 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.81 5.68 -51.93 -0.30 1.51 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 37 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -31.25 332.80 -5.95 -37.19 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.95 Total: 7.60 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.28 Total: -1.90 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.38 Total: -32.80 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.76 Total: -28.62 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.91 Total: 13.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.25 -5.95 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837232779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.263 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds