Wall clock time and date at job start Tue Mar 31 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.64402 * 2 1 4 4 O 1.20833 * 119.99655 * 119.57990 * 3 2 1 5 5 O 1.34231 * 120.00640 * 299.86261 * 3 2 1 6 6 C 1.45193 * 117.00126 * 179.71955 * 5 3 2 7 7 C 1.50706 * 109.46845 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99923 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00131 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47388 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00110 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00185 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.47061 * 60.00209 * 15 13 11 17 17 H 1.48498 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47247 * 300.00257 * 15 13 11 19 19 C 1.53031 * 109.63606 * 239.58624 * 2 1 3 20 20 C 1.50068 * 110.14354 * 289.53585 * 19 2 1 21 21 C 1.29438 * 124.08201 * 342.87653 * 20 19 2 22 22 C 1.50072 * 124.07213 * 0.48239 * 21 20 19 23 23 C 1.53037 * 110.14150 * 342.83895 * 22 21 20 24 24 H 1.08998 * 109.47154 * 59.99397 * 1 2 3 25 25 H 1.08992 * 109.47623 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46507 * 299.99825 * 1 2 3 27 27 H 1.08997 * 109.47488 * 299.99586 * 6 5 3 28 28 H 1.08997 * 109.47515 * 60.00401 * 6 5 3 29 29 H 0.97003 * 119.99738 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47646 * 300.00171 * 10 9 7 31 31 H 1.09011 * 109.46919 * 60.00069 * 10 9 7 32 32 H 0.97005 * 119.99872 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.35942 * 49.74927 * 19 2 1 34 34 H 1.09006 * 109.35479 * 169.33558 * 19 2 1 35 35 H 1.08004 * 117.95846 * 162.85017 * 20 19 2 36 36 H 1.08001 * 117.96505 * 180.46631 * 21 20 19 37 37 H 1.08999 * 109.35300 * 103.05603 * 22 21 20 38 38 H 1.08996 * 109.35911 * 222.78308 * 22 21 20 39 39 H 1.09004 * 109.65483 * 289.77583 * 23 22 21 40 40 H 1.08998 * 109.63688 * 169.13651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4192 0.0000 4 8 2.7262 1.8145 0.9101 5 8 1.7172 2.2460 -1.0081 6 6 2.2351 3.6007 -0.9389 7 6 1.7760 4.3762 -2.1468 8 8 1.0811 3.8399 -2.9837 9 7 2.1385 5.6656 -2.2975 10 6 1.6926 6.4193 -3.4719 11 6 2.2301 7.8254 -3.4001 12 1 2.8429 8.1273 -2.5636 13 6 1.9395 8.7265 -4.4025 14 7 1.1929 8.3591 -5.4208 15 14 2.6063 10.4692 -4.3138 16 1 4.0906 10.4304 -4.2855 17 1 2.1533 11.2336 -5.5036 18 1 2.1048 11.1291 -3.0817 19 6 2.0443 -0.7297 -1.2430 20 6 1.7742 -2.2013 -1.1271 21 6 1.4895 -2.8012 -0.0160 22 6 1.3795 -2.1072 1.3100 23 6 2.0501 -0.7332 1.2429 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8662 4.0851 -0.0349 28 1 3.3245 3.5725 -0.9173 29 1 2.6945 6.0944 -1.6283 30 1 2.0612 5.9348 -4.3761 31 1 0.6031 6.4478 -3.4932 32 1 0.9882 8.9932 -6.1258 33 1 1.5399 -0.3381 -2.1264 34 1 3.1176 -0.5658 -1.3399 35 1 1.8198 -2.7969 -2.0269 36 1 1.3203 -3.8675 -0.0451 37 1 0.3274 -1.9838 1.5670 38 1 1.8701 -2.7093 2.0747 39 1 3.1308 -0.8558 1.1706 40 1 1.8022 -0.1606 2.1366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838182639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:22 Heat of formation + Delta-G solvation = -123.771129 kcal Electronic energy + Delta-G solvation = -21682.770362 eV Core-core repulsion = 18269.328849 eV Total energy + Delta-G solvation = -3413.441512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.09323 -39.18390 -38.37779 -36.32230 -34.25428 -32.77428 -32.40992 -31.15522 -29.17180 -27.42310 -26.72220 -24.09107 -23.32326 -22.42214 -20.34606 -19.93705 -17.97064 -17.49318 -17.34341 -16.75216 -16.47700 -15.69098 -15.27863 -15.10913 -14.72171 -14.66024 -14.29840 -13.92321 -13.54952 -13.40968 -12.98953 -12.75229 -12.56538 -12.44065 -12.08367 -11.99784 -11.91313 -11.75976 -11.25300 -11.04203 -11.00528 -10.91211 -10.69880 -10.61325 -10.35603 -10.26363 -9.46549 -9.27740 -9.17913 -8.78728 -7.99688 -6.20354 -4.27905 2.00697 2.11463 2.41655 3.17261 3.23646 3.28570 3.29997 3.92004 4.21437 4.30938 4.38791 4.51643 4.79862 4.81554 4.96706 5.00779 5.12737 5.15661 5.18792 5.23719 5.33821 5.36808 5.43370 5.53892 5.60343 5.62961 5.76919 5.83774 5.89527 6.06425 6.34140 6.36735 6.66017 7.21516 7.29922 7.44804 7.58070 7.68815 7.91172 8.49136 8.70128 8.95519 9.38464 10.89747 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047241 B = 0.002785 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.561360 B =10051.314952 C =10363.356689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.469 3.531 4 O -0.510 6.510 5 O -0.324 6.324 6 C 0.047 3.953 7 C 0.500 3.500 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.252 3.748 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.100 4.100 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.393 0.607 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -19.787 12.948 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 C 0.312 3.688 4 O -0.398 6.398 5 O -0.239 6.239 6 C -0.031 4.031 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.131 3.869 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.120 4.120 20 C -0.163 4.163 21 C -0.179 4.179 22 C -0.128 4.128 23 C -0.137 4.137 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.775 -19.931 12.381 23.476 hybrid contribution 0.768 1.326 0.330 1.567 sum 1.543 -18.605 12.711 22.586 Atomic orbital electron populations 1.21941 0.91204 1.03588 1.03463 1.20572 0.98301 0.87283 0.98663 1.23747 0.77284 0.88475 0.79320 1.90651 1.35965 1.77080 1.36096 1.86571 1.68975 1.22349 1.45977 1.22873 1.00364 0.80375 0.99477 1.19887 0.81974 0.83132 0.86742 1.90706 1.37769 1.69089 1.43549 1.46368 1.52103 1.10125 1.27103 1.19167 0.95918 0.89770 0.81997 1.21173 1.33707 0.95460 1.08096 0.91827 1.24951 0.94840 0.99256 0.94917 1.69961 1.36284 1.35829 1.10126 0.86449 0.79289 0.83359 0.77663 1.20022 1.21033 1.20030 1.20534 1.01843 0.92761 0.96853 1.21979 1.00589 0.95537 0.98205 1.22047 1.01750 0.99652 0.94455 1.20521 1.01402 0.95070 0.95767 1.21566 1.00838 0.95180 0.96127 0.90631 0.90471 0.92060 0.88609 0.88603 0.77444 0.95264 0.95267 0.92304 0.88942 0.90270 0.87296 0.87728 0.90291 0.90582 0.90857 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.77 37.16 0.29 -1.10 16 2 C -0.05 -0.50 0.72 -155.44 -0.11 -0.61 16 3 C 0.47 6.48 6.54 36.00 0.24 6.71 16 4 O -0.51 -7.85 15.64 -18.76 -0.29 -8.14 16 5 O -0.32 -5.12 9.61 -45.90 -0.44 -5.57 16 6 C 0.05 0.72 5.94 36.01 0.21 0.93 16 7 C 0.50 10.01 7.91 -10.98 -0.09 9.92 16 8 O -0.53 -12.96 16.50 -14.11 -0.23 -13.19 16 9 N -0.71 -14.61 5.55 -61.47 -0.34 -14.95 16 10 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 11 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 12 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 15 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.08 -0.82 4.81 -28.17 -0.14 -0.96 16 20 C -0.15 -1.19 9.41 -35.90 -0.34 -1.52 16 21 C -0.16 -1.18 9.16 -35.90 -0.33 -1.51 16 22 C -0.09 -0.64 5.48 -28.17 -0.15 -0.79 16 23 C -0.10 -0.91 4.34 -26.51 -0.12 -1.03 16 24 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 25 H 0.08 0.62 5.72 -51.93 -0.30 0.32 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.11 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.08 0.50 6.93 -51.93 -0.36 0.14 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 40 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -32.60 335.88 -7.52 -40.12 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.01 Total: 2.80 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.98 Total: 3.33 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.40 Total: -40.03 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.97 Total: -26.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.60 -7.52 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838182639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.656 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds