Wall clock time and date at job start Tue Mar 31 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.62417 * 2 1 4 4 C 1.53010 * 109.62889 * 120.38405 * 2 1 3 5 5 C 1.50099 * 110.13209 * 169.66963 * 4 2 1 6 6 C 1.31639 * 123.77710 * 342.80615 * 5 4 2 7 7 C 1.46958 * 118.10850 * 180.42018 * 6 5 4 8 8 O 1.21530 * 119.99777 * 0.02562 * 7 6 5 9 9 O 1.34799 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00146 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47281 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99838 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47289 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99734 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00111 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99915 * 19 17 15 21 21 H 1.48498 * 109.47161 * 209.99603 * 19 17 15 22 22 H 1.48497 * 109.47329 * 329.99749 * 19 17 15 23 23 C 1.50096 * 123.78170 * 0.70591 * 6 5 4 24 24 C 1.53152 * 110.05088 * 342.39000 * 23 6 5 25 25 H 1.08991 * 109.47282 * 299.61406 * 1 2 3 26 26 H 1.08997 * 109.47095 * 59.61763 * 1 2 3 27 27 H 1.09004 * 109.46809 * 179.61138 * 1 2 3 28 28 H 1.09004 * 109.35543 * 49.46480 * 4 2 1 29 29 H 1.08996 * 109.36141 * 289.87561 * 4 2 1 30 30 H 1.07998 * 118.10871 * 162.83125 * 5 4 2 31 31 H 1.09004 * 109.47085 * 59.99617 * 10 9 7 32 32 H 1.09001 * 109.47239 * 300.00011 * 10 9 7 33 33 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 35 35 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 36 36 H 0.97007 * 120.00011 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.35893 * 102.77243 * 23 6 5 38 38 H 1.09003 * 109.35669 * 222.36290 * 23 6 5 39 39 H 1.09000 * 109.80656 * 290.35669 * 24 23 6 40 40 H 1.08997 * 109.73713 * 169.78646 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0440 -0.7289 1.2432 5 6 3.5234 -0.9575 1.1334 6 6 4.1938 -0.8813 0.0031 7 6 5.6404 -1.1381 0.0374 8 8 6.1841 -1.4121 1.0892 9 8 6.3642 -1.0697 -1.0978 10 6 7.7874 -1.3358 -0.9892 11 6 8.4262 -1.2150 -2.3487 12 8 7.7488 -0.9320 -3.3140 13 7 9.7506 -1.4204 -2.4915 14 6 10.3718 -1.3024 -3.8131 15 6 11.8492 -1.5774 -3.7001 16 1 12.2819 -1.8167 -2.7400 17 6 12.6480 -1.5247 -4.8226 18 7 13.9373 -1.7642 -4.7239 19 14 11.8991 -1.1116 -6.4834 20 1 11.9368 0.3582 -6.6915 21 1 12.6745 -1.7835 -7.5569 22 1 10.4909 -1.5811 -6.5220 23 6 3.5671 -0.5411 -1.3177 24 6 2.0494 -0.7322 -1.2434 25 1 -0.3633 0.5078 0.8933 26 1 -0.3633 0.5197 -0.8865 27 1 -0.3633 -1.0277 -0.0070 28 1 1.5358 -1.6889 1.3351 29 1 1.8361 -0.1262 2.1273 30 1 4.0692 -1.1988 2.0336 31 1 7.9402 -2.3443 -0.6046 32 1 8.2409 -0.6150 -0.3088 33 1 10.2926 -1.6457 -1.7193 34 1 9.9185 -2.0235 -4.4933 35 1 10.2187 -0.2941 -4.1978 36 1 14.4995 -1.7268 -5.5136 37 1 3.7923 0.4955 -1.5682 38 1 3.9744 -1.1941 -2.0897 39 1 1.8140 -1.7938 -1.1682 40 1 1.5818 -0.3158 -2.1356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838343869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:49 Heat of formation + Delta-G solvation = -129.418880 kcal Electronic energy + Delta-G solvation = -21211.491280 eV Core-core repulsion = 17797.804863 eV Total energy + Delta-G solvation = -3413.686417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74493 -39.14520 -38.49996 -36.39595 -34.37531 -33.28773 -32.43476 -31.15843 -29.58558 -27.80040 -26.84275 -23.52514 -23.03825 -21.99308 -20.93213 -20.12229 -18.64542 -17.67686 -17.47326 -16.76471 -16.64481 -15.86039 -15.16112 -14.93448 -14.76485 -14.54168 -14.27977 -13.92020 -13.69672 -13.35921 -13.12895 -12.99394 -12.78139 -12.46693 -12.40288 -12.32654 -12.08442 -11.93565 -11.23634 -11.07436 -10.94042 -10.83417 -10.72558 -10.62752 -10.46059 -10.00672 -9.54869 -9.41569 -9.34470 -8.82370 -8.27297 -6.24679 -4.27763 0.94597 2.39993 2.76559 3.03398 3.25015 3.31837 3.39696 3.85261 4.25125 4.30432 4.36765 4.44465 4.65710 4.85312 4.87755 5.07157 5.09050 5.09985 5.17259 5.18138 5.22917 5.23787 5.30707 5.47385 5.49848 5.61475 5.73803 5.78498 5.80922 6.04533 6.10115 6.22970 6.35314 6.72667 7.00356 7.09117 7.31213 7.62136 8.04576 8.40881 8.67652 8.79512 9.34366 10.87075 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.002774 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.112419 B =10089.865668 C =10763.151772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.090 4.090 5 C -0.065 4.065 6 C -0.147 4.147 7 C 0.497 3.503 8 O -0.516 6.516 9 O -0.323 6.323 10 C 0.049 3.951 11 C 0.502 3.498 12 O -0.536 6.536 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.081 4.081 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.399 0.601 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.152 2.318 11.669 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.148 4.148 7 C 0.343 3.657 8 O -0.406 6.406 9 O -0.238 6.238 10 C -0.029 4.029 11 C 0.286 3.714 12 O -0.414 6.414 13 N -0.350 5.350 14 C 0.101 3.899 15 C -0.584 4.584 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.118 4.118 24 C -0.152 4.152 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.233 0.767 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.236 2.422 11.122 27.684 hybrid contribution 0.440 0.015 -0.313 0.540 sum -24.795 2.437 10.809 27.158 Atomic orbital electron populations 1.21819 0.94712 1.01967 1.01906 1.21273 0.95763 0.99979 0.94665 0.90567 1.20680 0.91326 1.01634 0.99045 1.22997 0.96514 0.91602 0.97270 1.20114 0.89140 1.07777 0.97736 1.21663 0.88962 0.73594 0.81528 1.90841 1.72790 1.45311 1.31698 1.86649 1.21076 1.80927 1.35119 1.22821 0.78512 1.03864 0.97690 1.19918 0.83336 0.78893 0.89286 1.90697 1.62476 1.47756 1.40436 1.46067 1.06460 1.69028 1.13461 1.19555 0.93631 0.96937 0.79819 1.21067 0.89845 1.50275 0.97192 0.90127 1.24793 0.94644 0.94017 0.99157 1.69879 1.04366 1.48157 1.30364 0.86809 0.80169 0.79271 0.83405 1.19791 1.20843 1.18460 1.20391 0.94696 1.03094 0.93573 1.21718 0.94764 1.00882 0.97860 0.92599 0.92382 0.92551 0.89406 0.89808 0.85636 0.88331 0.88324 0.76706 0.95423 0.95882 0.92188 0.89986 0.89457 0.91483 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.20 37.16 0.34 -0.39 16 2 C -0.10 -0.62 2.76 -90.43 -0.25 -0.86 16 3 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 4 C -0.09 -0.55 5.43 -28.17 -0.15 -0.71 16 5 C -0.07 -0.58 9.42 -36.47 -0.34 -0.93 16 6 C -0.15 -1.61 5.78 -103.25 -0.60 -2.21 16 7 C 0.50 7.02 7.84 34.26 0.27 7.29 16 8 O -0.52 -8.07 15.75 -19.29 -0.30 -8.37 16 9 O -0.32 -5.09 9.07 -47.45 -0.43 -5.52 16 10 C 0.05 0.73 5.96 36.00 0.21 0.95 16 11 C 0.50 9.67 7.91 -10.99 -0.09 9.58 16 12 O -0.54 -12.38 16.50 -14.11 -0.23 -12.62 16 13 N -0.70 -13.98 5.55 -61.47 -0.34 -14.32 16 14 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 15 C -0.55 -14.82 9.83 -34.44 -0.34 -15.16 16 16 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 19 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 C -0.08 -0.79 5.45 -28.10 -0.15 -0.95 16 24 C -0.11 -0.84 5.31 -26.47 -0.14 -0.98 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 1.18 7.17 -52.49 -0.38 0.80 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 34 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 35 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 39 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -33.03 337.70 -7.59 -40.62 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.12 Total: 0.95 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.36 Total: 3.10 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.43 Total: -39.81 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.97 Total: -26.52 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.03 -7.59 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838343869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.799 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds