Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 N 1.30007 * 127.33837 * 270.02251 * 3 2 1 5 5 O 1.20651 * 112.32088 * 179.67950 * 4 3 2 6 6 C 1.33464 * 113.17891 * 0.50960 * 5 4 3 7 7 C 1.37443 * 106.32483 * 359.51399 * 6 5 4 8 8 C 1.47255 * 128.57358 * 180.24766 * 7 6 5 9 9 O 1.21529 * 119.99886 * 180.02562 * 8 7 6 10 10 O 1.34767 * 120.00103 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00042 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47026 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47068 * 299.99595 * 12 11 10 14 14 C 1.53000 * 109.47294 * 59.99920 * 12 11 10 15 15 C 1.53004 * 109.47228 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.47063 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00365 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99730 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46929 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46659 * 120.00162 * 20 18 16 23 23 H 1.48495 * 109.47311 * 240.00515 * 20 18 16 24 24 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47231 * 300.00192 * 1 2 3 26 26 H 1.09000 * 109.46804 * 60.00544 * 1 2 3 27 27 H 1.09000 * 109.47667 * 239.99650 * 2 1 3 28 28 H 1.09004 * 109.47244 * 119.99620 * 2 1 3 29 29 H 1.08002 * 126.84109 * 179.78327 * 6 5 4 30 30 H 1.09003 * 109.47137 * 300.00046 * 11 10 8 31 31 H 1.08999 * 109.47493 * 59.99472 * 11 10 8 32 32 H 1.08999 * 109.47100 * 60.00294 * 13 12 11 33 33 H 1.08995 * 109.46887 * 180.02562 * 13 12 11 34 34 H 1.08999 * 109.46768 * 300.00225 * 13 12 11 35 35 H 1.08995 * 109.47628 * 59.99992 * 14 12 11 36 36 H 1.09003 * 109.47139 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47022 * 299.99797 * 14 12 11 38 38 H 1.09007 * 109.46464 * 299.99647 * 15 12 11 39 39 H 1.08999 * 109.47346 * 59.99323 * 15 12 11 40 40 H 0.97007 * 119.99727 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2947 2.1644 -1.0336 5 8 2.6773 3.2651 -0.7210 6 6 2.7463 3.4418 0.6001 7 6 2.3298 2.2623 1.1698 8 6 2.2110 1.9242 2.5981 9 8 1.8222 0.8221 2.9313 10 8 2.5334 2.8370 3.5357 11 6 2.3925 2.4344 4.9236 12 6 2.8010 3.5935 5.8348 13 6 4.2580 3.9703 5.5586 14 6 1.9012 4.8000 5.5599 15 6 2.6519 3.1694 7.2973 16 6 3.0549 4.3109 8.1949 17 1 3.3841 5.2455 7.7652 18 6 3.0024 4.1625 9.5647 19 7 2.6011 3.0246 10.0879 20 14 3.5027 5.5772 10.6773 21 1 3.9126 6.7384 9.8475 22 1 2.3530 5.9631 11.5344 23 1 4.6394 5.1549 11.5343 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0619 4.3352 1.1184 30 1 1.3544 2.1663 5.1205 31 1 3.0331 1.5745 5.1193 32 1 4.3638 4.2725 4.5167 33 1 4.5491 4.7957 6.2081 34 1 4.8989 3.1107 5.7545 35 1 0.8633 4.5316 5.7567 36 1 2.1926 5.6259 6.2088 37 1 2.0071 5.1023 4.5180 38 1 1.6137 2.9013 7.4938 39 1 3.2925 2.3097 7.4936 40 1 2.5646 2.9201 11.0516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860735321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -51.805137 kcal Electronic energy + Delta-G solvation = -22029.191743 eV Core-core repulsion = 18618.870911 eV Total energy + Delta-G solvation = -3410.320833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.19940 -40.16535 -37.30864 -35.66779 -35.25780 -32.65631 -32.29726 -31.49197 -27.51079 -26.73151 -26.47670 -25.21378 -24.38511 -22.96312 -21.08108 -21.00689 -18.55138 -18.04138 -17.95734 -17.08510 -16.41977 -16.12931 -16.09376 -14.93662 -14.59889 -14.45307 -13.83188 -13.74765 -13.51000 -13.10179 -12.91404 -12.46235 -12.41571 -12.10764 -11.96554 -11.82475 -11.34219 -11.18840 -11.02627 -10.85783 -10.67216 -10.66563 -10.38989 -10.38665 -10.25235 -10.23706 -10.03591 -9.80163 -9.28456 -8.98719 -8.40850 -6.04812 -4.06132 0.73854 1.48822 2.42578 2.84503 3.02126 3.28000 3.36250 3.38965 3.73780 3.99528 4.41648 4.59521 4.89019 4.95887 5.04335 5.12002 5.26607 5.30919 5.41111 5.44127 5.57832 5.65349 5.74526 5.86156 5.95553 6.00578 6.11932 6.29626 6.43264 6.52438 6.64593 6.70243 7.04600 7.05277 7.07491 7.56106 7.67218 7.77823 7.91922 7.93745 8.34869 8.98403 9.57336 11.06830 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035068 B = 0.003349 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.260944 B = 8359.191104 C = 8878.317847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.077 3.923 4 N -0.358 5.358 5 O 0.095 5.905 6 C 0.026 3.974 7 C -0.243 4.243 8 C 0.539 3.461 9 O -0.499 6.499 10 O -0.346 6.346 11 C 0.081 3.919 12 C -0.059 4.059 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.034 3.966 16 C -0.510 4.510 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.236 0.764 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -0.907 -19.393 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.085 4.085 4 N -0.066 5.066 5 O 0.037 5.963 6 C -0.056 4.056 7 C -0.248 4.248 8 C 0.383 3.617 9 O -0.389 6.389 10 O -0.262 6.262 11 C 0.009 3.991 12 C -0.059 4.059 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.003 4.003 16 C -0.548 4.548 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.027 -1.455 -20.401 20.479 hybrid contribution 0.220 0.565 1.802 1.901 sum -0.808 -0.890 -18.600 18.638 Atomic orbital electron populations 1.21674 0.93433 1.02675 1.02319 1.20092 0.96911 0.87170 1.04591 1.24888 0.98705 0.98922 0.86026 1.73698 1.17028 0.92534 1.23343 1.84582 1.62089 1.26421 1.23204 1.26720 0.95308 1.00162 0.83369 1.21446 1.14487 0.96064 0.92846 1.19459 0.74601 0.82850 0.84837 1.90845 1.42829 1.22665 1.82517 1.86522 1.78222 1.43002 1.18443 1.23594 1.01887 0.99417 0.74243 1.20838 0.95736 0.92911 0.96393 1.21721 0.95304 1.01812 0.99495 1.21721 0.98652 0.98459 0.99499 1.19136 0.97483 0.97131 0.86507 1.21179 1.43944 0.99057 0.90633 0.91995 1.25017 0.95476 0.95658 0.98362 1.69975 1.47552 1.24305 1.11588 0.86560 0.78191 0.82580 0.80824 1.19706 1.21093 1.21089 0.91300 0.91998 0.92645 0.89789 0.88101 0.74767 0.91333 0.91324 0.94278 0.91470 0.93700 0.93696 0.91473 0.94288 0.96292 0.96292 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.51 6.20 -27.88 -0.17 -0.68 16 3 C 0.08 0.92 6.84 -79.75 -0.55 0.38 16 4 N -0.36 -4.25 12.01 34.79 0.42 -3.83 16 5 O 0.09 0.96 11.06 18.73 0.21 1.17 16 6 C 0.03 0.24 12.24 30.44 0.37 0.61 16 7 C -0.24 -2.96 6.47 -102.91 -0.67 -3.63 16 8 C 0.54 8.00 7.95 34.39 0.27 8.28 16 9 O -0.50 -8.51 15.49 -19.29 -0.30 -8.80 16 10 O -0.35 -5.28 8.79 -40.67 -0.36 -5.64 16 11 C 0.08 1.42 4.33 37.16 0.16 1.58 16 12 C -0.06 -1.12 0.61 -154.51 -0.09 -1.22 16 13 C -0.13 -2.25 8.08 37.16 0.30 -1.95 16 14 C -0.13 -2.25 8.08 37.16 0.30 -1.95 16 15 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 16 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 17 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.13 7.11 -51.93 -0.37 0.76 16 29 H 0.24 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 37 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 38 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -30.34 338.49 -5.33 -35.67 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.94 Total: -3.22 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.18 Total: -11.03 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 1.15 Total: -29.15 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.45 Total: -13.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.34 -5.33 -35.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds