Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 N 1.30007 * 127.33837 * 270.02251 * 3 2 1 5 5 O 1.20651 * 112.32088 * 179.67950 * 4 3 2 6 6 C 1.33464 * 113.17891 * 0.50960 * 5 4 3 7 7 C 1.37443 * 106.32483 * 359.51399 * 6 5 4 8 8 C 1.47255 * 128.57358 * 180.24766 * 7 6 5 9 9 O 1.21529 * 119.99886 * 180.02562 * 8 7 6 10 10 O 1.34767 * 120.00103 * 0.02562 * 8 7 6 11 11 C 1.45194 * 117.00042 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47026 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47068 * 299.99595 * 12 11 10 14 14 C 1.53000 * 109.47294 * 59.99920 * 12 11 10 15 15 C 1.53004 * 109.47228 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.47063 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00365 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99730 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46929 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46659 * 120.00162 * 20 18 16 23 23 H 1.48495 * 109.47311 * 240.00515 * 20 18 16 24 24 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47231 * 300.00192 * 1 2 3 26 26 H 1.09000 * 109.46804 * 60.00544 * 1 2 3 27 27 H 1.09000 * 109.47667 * 239.99650 * 2 1 3 28 28 H 1.09004 * 109.47244 * 119.99620 * 2 1 3 29 29 H 1.08002 * 126.84109 * 179.78327 * 6 5 4 30 30 H 1.09003 * 109.47137 * 300.00046 * 11 10 8 31 31 H 1.08999 * 109.47493 * 59.99472 * 11 10 8 32 32 H 1.08999 * 109.47100 * 60.00294 * 13 12 11 33 33 H 1.08995 * 109.46887 * 180.02562 * 13 12 11 34 34 H 1.08999 * 109.46768 * 300.00225 * 13 12 11 35 35 H 1.08995 * 109.47628 * 59.99992 * 14 12 11 36 36 H 1.09003 * 109.47139 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47022 * 299.99797 * 14 12 11 38 38 H 1.09007 * 109.46464 * 299.99647 * 15 12 11 39 39 H 1.08999 * 109.47346 * 59.99323 * 15 12 11 40 40 H 0.97007 * 119.99727 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2947 2.1644 -1.0336 5 8 2.6773 3.2651 -0.7210 6 6 2.7463 3.4418 0.6001 7 6 2.3298 2.2623 1.1698 8 6 2.2110 1.9242 2.5981 9 8 1.8222 0.8221 2.9313 10 8 2.5334 2.8370 3.5357 11 6 2.3925 2.4344 4.9236 12 6 2.8010 3.5935 5.8348 13 6 4.2580 3.9703 5.5586 14 6 1.9012 4.8000 5.5599 15 6 2.6519 3.1694 7.2973 16 6 3.0549 4.3109 8.1949 17 1 3.3841 5.2455 7.7652 18 6 3.0024 4.1625 9.5647 19 7 2.6011 3.0246 10.0879 20 14 3.5027 5.5772 10.6773 21 1 3.9126 6.7384 9.8475 22 1 2.3530 5.9631 11.5344 23 1 4.6394 5.1549 11.5343 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0619 4.3352 1.1184 30 1 1.3544 2.1663 5.1205 31 1 3.0331 1.5745 5.1193 32 1 4.3638 4.2725 4.5167 33 1 4.5491 4.7957 6.2081 34 1 4.8989 3.1107 5.7545 35 1 0.8633 4.5316 5.7567 36 1 2.1926 5.6259 6.2088 37 1 2.0071 5.1023 4.5180 38 1 1.6137 2.9013 7.4938 39 1 3.2925 2.3097 7.4936 40 1 2.5646 2.9201 11.0516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860735321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -67.983599 kcal Electronic energy + Delta-G solvation = -22029.893294 eV Core-core repulsion = 18618.870911 eV Total energy + Delta-G solvation = -3411.022383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.06180 -41.41357 -38.75322 -36.96659 -36.25470 -34.41727 -33.43651 -32.31788 -29.34311 -28.17403 -27.92281 -26.35674 -25.28812 -24.74030 -22.15058 -21.89142 -19.97727 -19.18121 -18.83908 -18.39890 -18.10507 -17.40538 -17.29071 -16.49665 -15.85434 -15.37516 -15.26708 -15.07207 -14.76139 -14.40503 -14.03547 -14.00079 -13.76199 -13.67284 -12.98017 -12.81786 -12.69793 -12.66914 -12.58023 -12.29767 -12.25650 -12.06411 -11.94111 -11.85481 -11.72216 -11.36852 -11.11715 -11.03221 -10.88174 -10.87620 -10.52203 -8.14749 -6.22143 -0.13791 0.60958 1.33274 1.42982 1.44838 1.56208 1.76572 2.16566 2.45247 2.86988 3.17144 3.20452 3.69691 3.85009 3.93911 3.95543 4.18100 4.24352 4.26257 4.28223 4.54919 4.59305 4.61558 4.75540 4.78377 4.91538 5.05423 5.05651 5.11942 5.16917 5.20860 5.36546 5.45237 5.49571 5.53824 5.55446 5.77240 5.89289 6.29202 6.59698 6.92402 7.09891 7.45720 8.98091 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035068 B = 0.003349 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.260944 B = 8359.191104 C = 8878.317847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C 0.070 3.930 4 N -0.371 5.371 5 O 0.100 5.900 6 C 0.067 3.933 7 C -0.277 4.277 8 C 0.543 3.457 9 O -0.529 6.529 10 O -0.335 6.335 11 C 0.092 3.908 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.074 0.926 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.256 1.256 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.278 0.722 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.072 0.928 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 1.179 -21.188 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.093 4.093 4 N -0.080 5.080 5 O 0.044 5.956 6 C -0.015 4.015 7 C -0.283 4.283 8 C 0.388 3.612 9 O -0.420 6.420 10 O -0.251 6.251 11 C 0.018 3.982 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.178 4.178 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.784 3.216 21 H -0.180 1.180 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.294 0.706 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.294 0.652 -22.231 22.242 hybrid contribution -0.009 -0.100 2.280 2.282 sum -0.303 0.551 -19.951 19.961 Atomic orbital electron populations 1.21640 0.92883 1.03514 1.01576 1.20142 0.97371 0.86773 1.04691 1.25132 0.98592 0.99517 0.86064 1.73709 1.17748 0.93058 1.23451 1.84581 1.61530 1.25781 1.23709 1.27425 0.91591 0.99918 0.82551 1.21288 1.17791 0.97947 0.91270 1.19813 0.73558 0.82246 0.85582 1.90839 1.44303 1.23858 1.83004 1.86479 1.78445 1.42909 1.17268 1.23197 1.01071 0.98324 0.75569 1.20638 0.97441 0.93975 0.93389 1.21664 0.93729 1.01060 1.01313 1.21664 0.97702 0.97088 1.01315 1.19002 0.94824 0.95765 0.90271 1.21581 1.42677 0.99754 0.91016 0.90839 1.25929 0.95746 0.98138 1.00273 1.70120 1.49346 1.26621 1.11847 0.85487 0.77592 0.79757 0.78773 1.18000 1.21051 1.21049 0.89757 0.93861 0.92096 0.88193 0.89423 0.70648 0.92249 0.92224 0.90910 0.92580 0.94431 0.94433 0.92579 0.90926 0.99212 0.99211 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -1.04 6.20 29.85 0.18 -0.85 16 3 C 0.07 1.57 6.84 45.17 0.31 1.87 16 4 N -0.37 -8.03 12.01 -44.74 -0.54 -8.56 16 5 O 0.10 1.73 11.06 77.25 0.85 2.58 16 6 C 0.07 0.96 12.24 67.63 0.83 1.79 16 7 C -0.28 -6.20 6.47 -18.76 -0.12 -6.32 16 8 C 0.54 15.51 7.95 70.19 0.56 16.07 16 9 O -0.53 -18.18 15.49 19.74 0.31 -17.88 16 10 O -0.34 -9.57 8.79 -56.78 -0.50 -10.07 16 11 C 0.09 3.19 4.33 71.98 0.31 3.50 16 12 C -0.05 -2.04 0.61 -52.18 -0.03 -2.07 16 13 C -0.12 -4.07 8.08 71.98 0.58 -3.49 16 14 C -0.12 -4.08 8.08 71.98 0.58 -3.49 16 15 C 0.04 1.92 4.04 29.85 0.12 2.04 16 16 C -0.51 -26.98 7.65 25.60 0.20 -26.79 16 17 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 19 N -0.94 -56.08 13.29 21.45 0.28 -55.80 16 20 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 21 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.98 7.11 -2.38 -0.02 1.97 16 29 H 0.28 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 33 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 37 H 0.07 1.96 7.68 -2.39 -0.02 1.94 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -66.97 338.49 8.16 -58.81 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.03 Total: 5.31 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.69 Total: -19.32 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.25 Total: -64.36 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.66 Total: -25.36 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -66.97 8.16 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860735321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.175 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds