Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47550 * 2 1 4 4 C 1.50699 * 110.43712 * 299.95115 * 3 2 1 5 5 O 1.20823 * 119.99286 * 250.49423 * 4 3 2 6 6 O 1.34218 * 120.00502 * 70.48722 * 4 3 2 7 7 C 1.45202 * 117.00273 * 185.06250 * 6 4 3 8 8 C 1.53001 * 109.47090 * 184.77110 * 7 6 4 9 9 C 1.50705 * 115.55004 * 56.17885 * 8 7 6 10 10 H 1.07991 * 119.99770 * 220.10224 * 9 8 7 11 11 C 1.37874 * 119.99791 * 40.10073 * 9 8 7 12 12 N 1.31513 * 120.00207 * 11.40013 * 11 9 8 13 13 Si 1.86803 * 119.99991 * 191.40292 * 11 9 8 14 14 H 1.48496 * 109.47119 * 275.00542 * 13 11 9 15 15 H 1.48500 * 109.46796 * 35.00254 * 13 11 9 16 16 H 1.48494 * 109.47279 * 154.99923 * 13 11 9 17 17 C 1.52998 * 117.51862 * 201.87359 * 8 7 6 18 18 C 1.52994 * 117.50260 * 270.50492 * 8 7 6 19 19 C 1.54631 * 110.59991 * 177.32487 * 3 2 1 20 20 C 1.54481 * 101.76350 * 266.06691 * 19 3 2 21 21 N 1.46758 * 105.47712 * 334.58624 * 20 19 3 22 22 C 1.34417 * 111.30226 * 17.01100 * 21 20 19 23 23 O 1.21282 * 124.94336 * 179.62766 * 22 21 20 24 24 H 1.08997 * 109.46826 * 307.27603 * 1 2 3 25 25 H 1.09007 * 109.46704 * 67.27046 * 1 2 3 26 26 H 1.08997 * 109.47434 * 187.27457 * 1 2 3 27 27 H 1.08997 * 109.46725 * 239.99793 * 2 1 3 28 28 H 1.08999 * 109.46971 * 120.00887 * 2 1 3 29 29 H 1.09005 * 109.46528 * 64.77771 * 7 6 4 30 30 H 1.08993 * 109.46975 * 304.77471 * 7 6 4 31 31 H 0.97005 * 119.99906 * 174.99277 * 12 11 9 32 32 H 1.08999 * 117.50198 * 214.97541 * 17 8 7 33 33 H 1.09003 * 117.49902 * 359.97438 * 17 8 7 34 34 H 1.09007 * 117.49774 * 359.97438 * 18 8 7 35 35 H 1.09001 * 117.50462 * 144.97474 * 18 8 7 36 36 H 1.08996 * 110.96494 * 24.18934 * 19 3 2 37 37 H 1.08999 * 110.96765 * 147.94959 * 19 3 2 38 38 H 1.08994 * 110.24051 * 215.58168 * 20 19 3 39 39 H 1.08999 * 110.31983 * 93.62719 * 20 19 3 40 40 H 0.96999 * 124.34888 * 197.03993 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5509 2.1736 -1.2235 5 8 2.3271 2.4700 -2.1007 6 8 0.2530 2.4953 -1.3390 7 6 -0.1682 3.0971 -2.5915 8 6 -1.6408 3.5006 -2.4937 9 6 -1.9869 4.4268 -1.3563 10 1 -2.9021 4.2822 -0.8017 11 6 -1.1349 5.4585 -1.0239 12 7 -0.1425 5.7763 -1.8263 13 14 -1.3900 6.4050 0.5662 14 1 -2.3836 7.4862 0.3447 15 1 -1.8889 5.4819 1.6170 16 1 -0.1004 6.9992 1.0010 17 6 -2.4163 3.6680 -3.8019 18 6 -2.6867 2.4611 -2.9014 19 6 3.5847 1.4733 0.0676 20 6 3.8309 1.6067 1.5868 21 7 2.6224 2.2422 2.1250 22 6 1.5995 2.1598 1.2570 23 8 0.4854 2.5974 1.4527 24 1 -0.3633 0.6224 0.8177 25 1 -0.3633 0.3971 -0.9479 26 1 -0.3634 -1.0193 0.1301 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 -0.0415 2.3779 -3.4008 30 1 0.4380 3.9804 -2.7921 31 1 0.4124 6.5472 -1.6295 32 1 -3.1767 4.4480 -3.8400 33 1 -1.8773 3.4912 -4.7327 34 1 -2.3257 1.4898 -3.2398 35 1 -3.6250 2.4467 -2.3468 36 1 4.0104 0.5464 -0.3168 37 1 3.9814 2.3351 -0.4691 38 1 4.7023 2.2341 1.7739 39 1 3.9715 0.6233 2.0353 40 1 2.5690 2.6675 2.9952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870048535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -92.231332 kcal Electronic energy + Delta-G solvation = -23912.393557 eV Core-core repulsion = 20500.319713 eV Total energy + Delta-G solvation = -3412.073844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02536 -38.94067 -36.77676 -36.16555 -34.97068 -34.03299 -32.01884 -30.01761 -27.71501 -26.38139 -25.21677 -22.83956 -22.46654 -21.63212 -21.14886 -19.10282 -18.92405 -17.25043 -16.73967 -16.43566 -16.19390 -15.57935 -14.95961 -14.47829 -14.19638 -14.13028 -13.81976 -13.43879 -13.10475 -13.03701 -12.75122 -12.30935 -12.15453 -11.93920 -11.61471 -11.55454 -11.32399 -10.91098 -10.83300 -10.70587 -10.65960 -10.41443 -10.24035 -9.95090 -9.48079 -9.41756 -9.26361 -9.02023 -8.98013 -8.64867 -7.99482 -5.94747 -3.95505 2.60419 2.95573 3.35691 3.38071 3.44750 3.56139 3.57222 4.23020 4.42835 4.51075 4.73198 4.87670 5.04160 5.13899 5.32694 5.33822 5.51464 5.54881 5.68422 5.72308 5.83179 6.00295 6.07927 6.12193 6.25470 6.35835 6.50559 6.67054 6.70665 6.78942 6.84825 6.88259 7.02927 7.08782 7.32977 7.47697 7.57288 8.01115 8.43591 8.44587 8.63220 8.97875 9.65115 11.09148 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.008029 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.945113 B = 3486.344168 C = 4240.121053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.092 4.092 4 C 0.475 3.525 5 O -0.519 6.519 6 O -0.300 6.300 7 C 0.106 3.894 8 C 0.053 3.947 9 C -0.475 4.475 10 H 0.061 0.939 11 C 0.077 3.923 12 N -0.886 5.886 13 Si 0.893 3.107 14 H -0.283 1.283 15 H -0.268 1.268 16 H -0.289 1.289 17 C -0.191 4.191 18 C -0.207 4.207 19 C -0.119 4.119 20 C 0.104 3.896 21 N -0.738 5.738 22 C 0.525 3.475 23 O -0.473 6.473 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.113 0.887 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -11.265 5.628 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.131 4.131 3 C -0.097 4.097 4 C 0.316 3.684 5 O -0.410 6.410 6 O -0.213 6.213 7 C 0.033 3.967 8 C 0.052 3.948 9 C -0.512 4.512 10 H 0.079 0.921 11 C -0.125 4.125 12 N -0.524 5.524 13 Si 0.721 3.279 14 H -0.210 1.210 15 H -0.193 1.193 16 H -0.215 1.215 17 C -0.229 4.229 18 C -0.244 4.244 19 C -0.156 4.156 20 C -0.021 4.021 21 N -0.397 5.397 22 C 0.308 3.692 23 O -0.344 6.344 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.637 -10.859 5.363 14.875 hybrid contribution 0.098 0.795 0.980 1.266 sum 8.734 -10.063 6.343 14.758 Atomic orbital electron populations 1.21988 0.93438 1.01485 1.05375 1.21371 0.98284 0.90469 1.03012 1.21382 0.97507 0.98059 0.92709 1.22441 0.82645 0.76629 0.86645 1.90589 1.56961 1.51549 1.41876 1.86631 1.23595 1.69862 1.41209 1.22883 0.97674 0.96791 0.79364 1.18807 0.86607 0.95253 0.94106 1.20342 1.05961 1.11605 1.13281 0.92098 1.24860 0.94432 0.96944 0.96265 1.69793 1.19446 1.26485 1.36686 0.86558 0.77198 0.79449 0.84658 1.20966 1.19264 1.21454 1.22938 1.05162 0.99767 0.95004 1.22918 1.02640 0.92801 1.06080 1.22707 0.91851 1.05537 0.95532 1.22055 0.88064 0.98211 0.93734 1.46109 1.12417 1.60624 1.20523 1.20189 0.84790 0.79322 0.84877 1.90914 1.19917 1.45846 1.77688 0.90625 0.90889 0.92820 0.90508 0.90576 0.95525 0.86972 0.92953 0.89802 0.91614 0.91395 0.90318 0.88430 0.88367 0.90097 0.90957 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.04 37.16 0.34 -2.26 16 2 C -0.09 -1.24 4.95 -26.73 -0.13 -1.37 16 3 C -0.09 -1.49 0.60 -155.67 -0.09 -1.58 16 4 C 0.47 10.20 6.34 36.01 0.23 10.43 16 5 O -0.52 -11.91 15.34 -18.75 -0.29 -12.20 16 6 O -0.30 -7.34 7.04 -43.81 -0.31 -7.64 16 7 C 0.11 2.70 4.82 37.16 0.18 2.88 16 8 C 0.05 1.37 2.03 -155.66 -0.32 1.05 16 9 C -0.47 -13.64 8.77 -34.44 -0.30 -13.94 16 10 H 0.06 1.75 7.84 -52.49 -0.41 1.34 16 11 C 0.08 2.24 5.24 -17.82 -0.09 2.14 16 12 N -0.89 -26.06 11.01 55.43 0.61 -25.45 16 13 Si 0.89 23.02 29.56 -169.99 -5.02 18.00 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 C -0.19 -4.42 9.96 -26.73 -0.27 -4.69 16 18 C -0.21 -4.64 9.93 -26.74 -0.27 -4.90 16 19 C -0.12 -1.42 5.92 -25.10 -0.15 -1.57 16 20 C 0.10 0.96 7.78 -3.12 -0.02 0.94 16 21 N -0.74 -9.46 6.24 -59.20 -0.37 -9.83 16 22 C 0.53 9.38 6.66 -10.86 -0.07 9.31 16 23 O -0.47 -10.82 15.65 -5.80 -0.09 -10.91 16 24 H 0.07 1.37 6.07 -51.93 -0.32 1.06 16 25 H 0.07 1.32 6.40 -51.92 -0.33 0.99 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.63 8.10 -51.93 -0.42 0.20 16 30 H 0.11 3.19 5.86 -51.93 -0.30 2.89 16 31 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 32 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.10 0.89 7.90 -51.93 -0.41 0.48 16 37 H 0.10 1.36 7.24 -51.93 -0.38 0.99 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.41 4.51 8.96 -40.82 -0.37 4.14 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -34.33 328.18 -7.37 -41.70 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.88 Total: 4.95 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.97 Total: -3.56 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.24 Total: -35.29 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.69 Total: -30.75 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.33 -7.37 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870048535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.531 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds