Wall clock time and date at job start Tue Mar 31 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.50696 * 109.47133 * 239.99965 * 2 1 3 5 5 N 1.29412 * 125.69577 * 59.69423 * 4 2 1 6 6 N 1.26407 * 116.47911 * 179.76615 * 5 4 2 7 7 C 1.29421 * 116.46858 * 0.53584 * 6 5 4 8 8 C 1.50692 * 125.69206 * 179.67920 * 7 6 5 9 9 N 1.46905 * 109.47587 * 90.04100 * 8 7 6 10 10 C 1.46891 * 111.00336 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47175 * 185.35137 * 10 9 8 12 12 C 1.50690 * 115.55041 * 65.04498 * 11 10 9 13 13 H 1.08006 * 120.00507 * 265.44653 * 12 11 10 14 14 C 1.37875 * 120.00082 * 85.45077 * 12 11 10 15 15 N 1.31513 * 120.00217 * 353.59652 * 14 12 11 16 16 Si 1.86805 * 120.00149 * 173.59710 * 14 12 11 17 17 H 1.48500 * 109.47169 * 59.99811 * 16 14 12 18 18 H 1.48505 * 109.47270 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46944 * 299.99821 * 16 14 12 20 20 C 1.52997 * 117.49511 * 279.37754 * 11 10 9 21 21 C 1.52999 * 117.49934 * 210.71774 * 11 10 9 22 22 S 1.71219 * 125.69683 * 239.99953 * 4 2 1 23 23 H 1.08996 * 109.47605 * 60.00239 * 1 2 3 24 24 H 1.09010 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47320 * 299.99473 * 1 2 3 26 26 H 1.09003 * 109.47001 * 119.99920 * 2 1 3 27 27 H 1.09003 * 109.47189 * 299.99805 * 3 2 1 28 28 H 1.09000 * 109.47076 * 59.99779 * 3 2 1 29 29 H 1.08998 * 109.47253 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47058 * 210.03627 * 8 7 6 31 31 H 1.09004 * 109.47698 * 330.04005 * 8 7 6 32 32 H 1.00903 * 110.99327 * 303.95454 * 9 8 7 33 33 H 1.09007 * 109.47061 * 305.34387 * 10 9 8 34 34 H 1.08997 * 109.47679 * 65.34618 * 10 9 8 35 35 H 0.97001 * 120.00349 * 180.02562 * 15 14 12 36 36 H 1.09004 * 117.50003 * 359.97438 * 20 11 10 37 37 H 1.09005 * 117.49823 * 145.02167 * 20 11 10 38 38 H 1.08997 * 117.50256 * 214.97292 * 21 11 10 39 39 H 1.09010 * 117.49644 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7840 -0.3689 -2.4537 6 7 2.3000 -1.0888 -3.3556 7 6 3.0106 -2.0938 -2.9555 8 6 3.7112 -3.0858 -3.8475 9 7 5.0702 -2.6093 -4.1374 10 6 5.7852 -3.5537 -5.0061 11 6 7.2342 -3.0931 -5.1767 12 6 8.0722 -3.1066 -3.9244 13 1 8.1733 -2.2088 -3.3325 14 6 8.7101 -4.2649 -3.5342 15 7 8.4879 -5.3880 -4.1813 16 14 9.8901 -4.2391 -2.0862 17 1 9.1669 -3.7993 -0.8661 18 1 10.4397 -5.6019 -1.8711 19 1 11.0013 -3.2958 -2.3701 20 6 7.5084 -1.9877 -6.1984 21 6 7.9313 -3.4283 -6.4968 22 16 3.0208 -2.1083 -1.2433 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 3.7643 -4.0518 -3.3453 31 1 3.1566 -3.1911 -4.7800 32 1 5.0505 -1.6864 -4.5448 33 1 5.7701 -4.5457 -4.5545 34 1 5.2985 -3.5908 -5.9807 35 1 8.9363 -6.2031 -3.9066 36 1 6.6565 -1.5889 -6.7493 37 1 8.2953 -1.2704 -5.9649 38 1 8.9961 -3.6581 -6.4596 39 1 7.3576 -3.9774 -7.2437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894197849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:04 Heat of formation + Delta-G solvation = 75.868432 kcal Electronic energy + Delta-G solvation = -19329.212359 eV Core-core repulsion = 16399.473490 eV Total energy + Delta-G solvation = -2929.738869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20307 -37.19047 -36.15218 -34.65653 -31.85378 -30.78193 -27.76665 -27.42036 -25.78178 -25.00857 -23.30558 -22.14846 -21.01688 -19.33245 -19.13976 -18.70234 -16.35044 -15.78519 -15.71497 -15.17329 -14.61178 -14.44653 -13.99666 -13.74131 -13.65448 -13.25491 -13.17238 -12.71766 -12.40387 -11.99896 -11.89718 -11.54350 -11.52430 -11.38511 -11.27906 -10.91682 -10.71066 -10.47094 -10.28921 -10.17296 -10.03835 -9.65933 -9.57489 -9.42038 -8.81577 -8.38314 -8.07710 -7.73587 -5.96704 -3.98332 0.53176 1.02622 1.53197 2.65250 3.35115 3.39200 3.42789 3.92374 4.43381 4.47349 4.58477 4.79818 4.87713 4.99769 5.13481 5.33243 5.38406 5.39039 5.45083 5.57529 5.61485 5.65710 5.69458 5.82977 5.96991 6.05665 6.15101 6.29617 6.46787 6.56996 6.73679 6.81045 7.11842 7.46275 7.49878 7.77983 7.95663 7.98608 8.54062 8.66962 9.00714 9.64933 11.13091 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004164 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.318513 B = 6722.584796 C = 7408.979685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.009 4.009 3 C -0.142 4.142 4 C -0.032 4.032 5 N -0.259 5.259 6 N -0.266 5.266 7 C 0.002 3.998 8 C 0.136 3.864 9 N -0.663 5.663 10 C 0.108 3.892 11 C 0.052 3.948 12 C -0.471 4.471 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.216 4.216 21 C -0.156 4.156 22 S 0.195 5.805 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.338 0.662 33 H 0.080 0.920 34 H 0.001 0.999 35 H 0.258 0.742 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 6.380 7.826 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.311 4.311 5 N -0.097 5.097 6 N -0.105 5.105 7 C -0.277 4.277 8 C 0.003 3.997 9 N -0.294 5.294 10 C -0.020 4.020 11 C 0.051 3.949 12 C -0.509 4.509 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.523 5.523 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.253 4.253 21 C -0.194 4.194 22 S 0.441 5.559 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.562 6.072 8.127 16.937 hybrid contribution 0.317 0.067 -0.254 0.412 sum -13.245 6.139 7.873 16.586 Atomic orbital electron populations 1.21819 0.92799 1.02380 1.02929 1.19711 0.96824 0.96076 0.90581 1.21826 1.01525 0.93837 1.02874 1.29202 1.02365 1.00186 0.99299 1.71320 1.18962 1.23048 0.96346 1.71480 1.09409 1.02745 1.26829 1.29216 1.01123 1.00407 0.96969 1.20413 0.89961 0.93664 0.95679 1.60385 1.10998 1.06097 1.51928 1.21604 0.93573 0.95885 0.90986 1.18776 0.90998 0.95228 0.89887 1.20263 1.27490 0.96216 1.06935 0.92351 1.24926 0.96550 0.95479 0.96390 1.69990 1.42551 0.99038 1.40761 0.86744 0.81593 0.76830 0.83302 1.20250 1.21492 1.20436 1.23010 1.02114 0.92568 1.07636 1.22522 1.00616 0.95531 1.00743 1.83834 1.43272 1.23750 1.05054 0.91425 0.92518 0.91467 0.89116 0.91425 0.91474 0.92244 0.88716 0.92563 0.84479 0.90156 0.98125 0.93232 0.92106 0.90490 0.90001 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.17 37.16 0.34 -0.80 16 2 C -0.01 -0.09 3.37 -91.78 -0.31 -0.40 16 3 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 4 C -0.03 -0.41 6.04 -13.30 -0.08 -0.49 16 5 N -0.26 -4.10 11.66 32.58 0.38 -3.72 16 6 N -0.27 -4.53 11.66 32.58 0.38 -4.15 16 7 C 0.00 0.03 7.04 -13.30 -0.09 -0.07 16 8 C 0.14 2.18 6.27 -4.98 -0.03 2.15 16 9 N -0.66 -12.73 6.36 -115.06 -0.73 -13.46 16 10 C 0.11 2.31 5.51 -3.83 -0.02 2.29 16 11 C 0.05 1.24 1.55 -155.66 -0.24 1.00 16 12 C -0.47 -12.62 8.74 -34.45 -0.30 -12.92 16 13 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 14 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 15 N -0.89 -24.58 12.92 55.43 0.72 -23.87 16 16 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.22 -4.68 9.96 -26.69 -0.27 -4.95 16 21 C -0.16 -3.62 9.41 -26.69 -0.25 -3.87 16 22 S 0.20 2.60 23.04 -107.50 -2.48 0.12 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.34 6.45 8.78 -39.29 -0.34 6.11 16 33 H 0.08 1.89 8.13 -51.92 -0.42 1.46 16 34 H 0.00 0.01 8.09 -51.93 -0.42 -0.41 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -29.17 345.10 -8.79 -37.96 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.23 Total: 3.10 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.01 Total: -17.22 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.74 Total: -45.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.48 Total: 0.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.17 -8.79 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894197849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.833 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds