Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47306 * 2 1 4 4 C 1.52995 * 109.46644 * 120.00065 * 2 1 3 5 5 N 1.46905 * 109.46986 * 177.01551 * 4 2 1 6 6 C 1.46897 * 110.99983 * 157.63078 * 5 4 2 7 7 C 1.50697 * 109.47628 * 287.73150 * 6 5 4 8 8 H 1.08003 * 119.99629 * 4.70708 * 7 6 5 9 9 C 1.37872 * 120.00637 * 184.70287 * 7 6 5 10 10 N 1.31517 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00347 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47041 * 60.00187 * 11 9 7 13 13 H 1.48503 * 109.47271 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46960 * 300.00104 * 11 9 7 15 15 C 1.46894 * 111.00146 * 281.58742 * 5 4 2 16 16 N 1.46497 * 109.47068 * 76.74716 * 15 5 4 17 17 C 1.35943 * 119.93905 * 243.64675 * 16 15 5 18 18 C 1.35989 * 119.17798 * 180.22886 * 17 16 15 19 19 C 1.39916 * 119.06269 * 359.48845 * 18 17 16 20 20 N 1.31703 * 119.83425 * 0.52291 * 19 18 17 21 21 C 1.33470 * 120.83284 * 359.73968 * 20 19 18 22 22 S 1.71194 * 119.51602 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.47072 * 299.99946 * 1 2 3 24 24 H 1.08998 * 109.46672 * 59.99737 * 1 2 3 25 25 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47072 * 240.00054 * 2 1 3 27 27 H 1.09006 * 109.46826 * 63.96964 * 3 2 1 28 28 H 1.08996 * 109.47290 * 183.96988 * 3 2 1 29 29 H 1.08998 * 109.47129 * 303.97541 * 3 2 1 30 30 H 1.09000 * 109.47559 * 57.02329 * 4 2 1 31 31 H 1.08997 * 109.47659 * 297.01842 * 4 2 1 32 32 H 1.08999 * 109.47342 * 47.73290 * 6 5 4 33 33 H 1.09004 * 109.47316 * 167.72781 * 6 5 4 34 34 H 0.96996 * 119.99969 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47702 * 316.74738 * 15 5 4 36 36 H 1.08998 * 109.47329 * 196.74455 * 15 5 4 37 37 H 1.08004 * 120.41159 * 359.95697 * 17 16 15 38 38 H 1.08003 * 120.46533 * 179.72363 * 18 17 16 39 39 H 1.08007 * 120.08313 * 180.26074 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5072 -0.7841 1.2138 6 6 4.0591 -0.9656 2.5630 7 6 3.9086 0.3144 3.3439 8 1 3.3815 1.1520 2.9113 9 6 4.4436 0.4164 4.6105 10 7 5.0858 -0.6034 5.1371 11 14 4.2564 2.0029 5.5786 12 1 2.8138 2.2963 5.7739 13 1 4.9157 1.8565 6.9012 14 1 4.8913 3.1173 4.8302 15 6 3.9670 -1.8465 0.3096 16 7 3.8319 -1.3986 -1.0787 17 6 2.9819 -2.0445 -1.9203 18 6 2.8721 -1.6186 -3.2071 19 6 3.6298 -0.5196 -3.6263 20 7 4.4418 0.0780 -2.7789 21 6 4.5494 -0.3479 -1.5185 22 16 5.6148 0.4544 -0.4453 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.7360 1.9353 0.9235 28 1 3.1278 1.4433 -0.0711 29 1 1.6198 1.9764 -0.8522 30 1 1.6337 -1.7324 1.2763 31 1 1.7209 -0.1776 2.1384 32 1 3.5214 -1.7663 3.0708 33 1 5.1153 -1.2257 2.4916 34 1 5.4619 -0.5318 6.0283 35 1 3.3633 -2.7409 0.4631 36 1 5.0125 -2.0737 0.5179 37 1 2.4042 -2.8882 -1.5725 38 1 2.2065 -2.1192 -3.8947 39 1 3.5522 -0.1648 -4.6435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919943395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = 80.285330 kcal Electronic energy + Delta-G solvation = -21035.462779 eV Core-core repulsion = 18105.915441 eV Total energy + Delta-G solvation = -2929.547338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60464 -37.75242 -35.19618 -34.02352 -32.62709 -32.07918 -27.72872 -26.82128 -26.58290 -25.19575 -24.82467 -23.32094 -20.96034 -19.80141 -18.34474 -18.08378 -17.11086 -16.15386 -15.96224 -15.19996 -14.86618 -14.59447 -14.25733 -14.01709 -13.65751 -13.60028 -13.12883 -12.63159 -12.22723 -11.91977 -11.90262 -11.56544 -11.31511 -11.21694 -10.83293 -10.68615 -10.63152 -10.60350 -10.25053 -10.24242 -9.96773 -9.92792 -9.79057 -9.27768 -8.37424 -7.63215 -7.06868 -6.48000 -5.96552 -3.95244 0.31590 0.87993 2.24752 2.90309 3.24900 3.39579 3.43678 3.49348 4.03095 4.21868 4.37694 4.52807 4.74965 4.89683 4.96203 5.13306 5.26265 5.32306 5.40259 5.48920 5.55565 5.58808 5.74814 5.90215 5.94153 6.17532 6.21161 6.27599 6.36867 6.38680 6.48166 6.73237 7.05578 7.14500 7.17786 7.61884 7.79457 8.02579 8.12766 8.49258 9.09473 9.67374 11.14435 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.006258 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.052336 B = 4473.435858 C = 4891.381906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.059 3.941 5 N -0.512 5.512 6 C 0.210 3.790 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.254 3.746 16 N -0.445 5.445 17 C 0.169 3.831 18 C -0.266 4.266 19 C 0.212 3.788 20 N -0.484 5.484 21 C 0.432 3.568 22 S -0.478 6.478 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.091 0.909 32 H -0.011 1.011 33 H 0.042 0.958 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -7.031 -16.959 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.070 4.070 5 N -0.236 5.236 6 C 0.086 3.914 7 C -0.530 4.530 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.542 5.542 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.201 1.201 15 C 0.042 3.958 16 N -0.133 5.133 17 C 0.025 3.975 18 C -0.298 4.298 19 C 0.022 3.978 20 N -0.200 5.200 21 C 0.085 3.915 22 S -0.329 6.329 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.007 0.993 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.192 0.808 38 H 0.176 0.824 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.066 -5.300 -15.895 18.596 hybrid contribution -1.623 -1.056 0.360 1.970 sum -9.689 -6.356 -15.535 19.381 Atomic orbital electron populations 1.21814 0.95948 1.00807 1.01588 1.21314 0.94345 0.98021 0.97743 1.21820 1.04028 0.94216 0.99954 1.22316 0.88320 0.97577 0.98762 1.61898 1.06885 1.41774 1.13058 1.19648 0.95305 0.96843 0.79645 1.20969 1.34720 0.98827 0.98452 0.91911 1.24906 0.95342 0.96464 0.97712 1.69928 1.37287 1.30437 1.16503 0.86588 0.78049 0.84069 0.78890 1.20485 1.21472 1.20088 1.22758 1.03990 0.92295 0.76774 1.46627 1.29424 1.23821 1.13424 1.22847 0.88841 0.95021 0.90793 1.21712 1.08402 1.03334 0.96340 1.23985 0.85835 0.88232 0.99722 1.70233 1.20192 1.28857 1.00693 1.24162 0.90176 0.84475 0.92683 1.93291 1.33872 1.57980 1.47794 0.92465 0.93262 0.93459 0.93296 0.92888 0.89716 0.95101 0.96349 0.89035 0.99319 0.94020 0.92987 0.91819 0.86831 0.80807 0.82433 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.10 -1.43 2.81 -90.62 -0.25 -1.69 16 3 C -0.14 -2.56 9.01 37.16 0.33 -2.23 16 4 C 0.06 1.02 4.23 -3.82 -0.02 1.01 16 5 N -0.51 -10.15 2.52 -239.99 -0.60 -10.75 16 6 C 0.21 5.17 4.71 -4.98 -0.02 5.15 16 7 C -0.49 -13.67 8.40 -34.44 -0.29 -13.96 16 8 H 0.06 1.78 7.60 -52.48 -0.40 1.38 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 11 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.25 4.03 4.78 -63.33 -0.30 3.73 16 16 N -0.44 -6.21 1.56 -121.62 -0.19 -6.40 16 17 C 0.17 1.50 8.12 -16.54 -0.13 1.37 16 18 C -0.27 -1.89 10.08 -39.76 -0.40 -2.29 16 19 C 0.21 2.03 11.30 -16.98 -0.19 1.84 16 20 N -0.48 -7.45 10.39 -13.80 -0.14 -7.60 16 21 C 0.43 7.56 6.77 -88.22 -0.60 6.96 16 22 S -0.48 -11.06 27.16 -107.50 -2.92 -13.98 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.68 3.91 -51.93 -0.20 0.47 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.81 5.84 -51.93 -0.30 1.51 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 32 H -0.01 -0.28 8.05 -51.93 -0.42 -0.69 16 33 H 0.04 1.14 7.67 -51.93 -0.40 0.74 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.79 7.31 -51.93 -0.38 0.41 16 36 H 0.11 2.00 7.30 -51.93 -0.38 1.63 16 37 H 0.17 0.88 7.88 -52.48 -0.41 0.46 16 38 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -35.47 326.00 -10.61 -46.08 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.75 Total: -3.58 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.63 Total: -0.03 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.20 Total: -50.78 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -2.92 Total: -13.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.47 -10.61 -46.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919943395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.361 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds