Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34508 * 125.78887 * 2 1 4 4 C 1.41383 * 106.84269 * 179.75250 * 3 2 1 5 5 C 1.34520 * 106.83629 * 0.37515 * 4 3 2 6 6 C 1.50699 * 125.78769 * 179.89151 * 5 4 3 7 7 H 1.09004 * 109.54476 * 19.60157 * 6 5 4 8 8 C 1.53099 * 109.50457 * 259.49867 * 6 5 4 9 9 O 1.43022 * 109.25855 * 183.21896 * 8 6 5 10 10 C 1.43016 * 113.73699 * 58.66610 * 9 8 6 11 11 C 1.53094 * 109.25989 * 301.33009 * 10 9 8 12 12 N 1.47013 * 109.50742 * 139.71589 * 6 5 4 13 13 C 1.46903 * 110.99933 * 302.32481 * 12 6 5 14 14 C 1.52997 * 109.47162 * 170.54771 * 13 12 6 15 15 H 1.08997 * 109.47381 * 59.35479 * 14 13 12 16 16 O 1.42905 * 109.46923 * 299.35187 * 14 13 12 17 17 C 1.50694 * 109.46998 * 179.35596 * 14 13 12 18 18 H 1.08000 * 120.00321 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99949 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99970 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 120.00134 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46670 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46690 * 120.00036 * 21 19 17 24 24 H 1.48496 * 109.46866 * 240.00379 * 21 19 17 25 25 O 1.34299 * 125.78839 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47198 * 299.99647 * 1 2 3 28 28 H 1.09002 * 109.46979 * 59.99471 * 1 2 3 29 29 H 1.08005 * 126.58573 * 0.02562 * 3 2 1 30 30 H 1.07995 * 126.58584 * 180.23843 * 4 3 2 31 31 H 1.08993 * 109.50877 * 63.28157 * 8 6 5 32 32 H 1.09004 * 109.50327 * 303.14790 * 8 6 5 33 33 H 1.09004 * 109.50235 * 181.39694 * 10 9 8 34 34 H 1.08994 * 109.50673 * 61.27065 * 10 9 8 35 35 H 1.09002 * 109.50897 * 296.91450 * 11 10 9 36 36 H 1.09004 * 109.54177 * 176.80612 * 11 10 9 37 37 H 1.08997 * 109.47215 * 290.54724 * 13 12 6 38 38 H 1.09004 * 109.46859 * 50.54556 * 13 12 6 39 39 H 0.96696 * 114.00054 * 300.00313 * 16 14 13 40 40 H 0.96999 * 120.00358 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0058 5 6 3.5814 -0.7122 0.0006 6 6 4.7706 -1.6379 0.0016 7 1 5.6514 -1.0995 0.3515 8 6 5.0177 -2.1541 -1.4184 9 8 6.0995 -3.0895 -1.3987 10 6 5.8744 -4.2120 -0.5415 11 6 5.6360 -3.7165 0.8873 12 7 4.5053 -2.7769 0.8924 13 6 4.2065 -2.3202 2.2563 14 6 3.7085 -3.5011 3.0919 15 1 4.4742 -4.2764 3.1178 16 8 2.5158 -4.0288 2.5076 17 6 3.4170 -3.0359 4.4953 18 1 3.5718 -2.0015 4.7644 19 6 2.9525 -3.9308 5.4358 20 7 2.7645 -5.1905 5.1082 21 14 2.5918 -3.3543 7.1756 22 1 2.8841 -1.9026 7.2866 23 1 1.1609 -3.5962 7.4905 24 1 3.4432 -4.1057 8.1325 25 8 2.2924 -1.0894 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9666 2.1204 0.0004 30 1 4.5212 1.2433 0.0110 31 1 5.2710 -1.3184 -2.0705 32 1 4.1181 -2.6459 -1.7885 33 1 6.7474 -4.8645 -0.5596 34 1 4.9998 -4.7635 -0.8862 35 1 6.5306 -3.2115 1.2515 36 1 5.4079 -4.5640 1.5338 37 1 5.1097 -1.9105 2.7083 38 1 3.4362 -1.5497 2.2208 39 1 1.7901 -3.3922 2.4522 40 1 2.4381 -5.8202 5.7699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929668098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = -71.502361 kcal Electronic energy + Delta-G solvation = -23237.194884 eV Core-core repulsion = 19826.019916 eV Total energy + Delta-G solvation = -3411.174968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.41761 -39.35735 -36.38678 -34.55711 -32.95101 -32.55763 -32.06607 -30.52076 -29.12627 -26.75764 -26.05281 -23.93337 -23.33096 -21.52958 -20.88215 -20.21298 -19.54057 -17.29086 -16.45475 -16.38318 -15.66620 -15.54359 -14.98448 -14.77210 -14.68997 -14.48803 -14.01399 -13.47067 -13.31972 -13.21734 -12.96874 -12.90888 -12.58160 -12.47615 -12.06984 -11.81783 -11.55599 -11.20732 -11.17284 -10.94302 -10.82102 -10.53585 -10.42154 -10.03286 -9.75835 -9.57224 -8.96965 -8.57492 -8.14318 -8.04543 -7.79395 -6.01206 -4.19198 1.90546 2.74878 3.09459 3.25580 3.33830 3.37339 3.94373 4.10486 4.40916 4.75197 4.97504 5.06879 5.16936 5.23224 5.26536 5.30161 5.38754 5.46569 5.50149 5.52730 5.75131 5.77443 5.82338 5.94114 6.02555 6.10437 6.14415 6.20478 6.29951 6.30642 6.50944 6.68981 6.79882 7.18315 7.31506 7.38839 7.54271 7.75434 7.85699 8.19527 8.84398 9.46034 9.62188 11.02960 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.006443 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.548337 B = 4344.506599 C = 5699.725270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.218 4.218 4 C -0.213 4.213 5 C 0.012 3.988 6 C 0.124 3.876 7 H 0.070 0.930 8 C 0.075 3.925 9 O -0.386 6.386 10 C 0.062 3.938 11 C 0.019 3.981 12 N -0.516 5.516 13 C 0.032 3.968 14 C 0.240 3.760 15 H 0.054 0.946 16 O -0.552 6.552 17 C -0.573 4.573 18 H 0.054 0.946 19 C 0.081 3.919 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 O -0.148 6.148 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.101 0.899 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.342 0.658 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 8.866 -12.219 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.237 4.237 4 C -0.233 4.233 5 C -0.039 4.039 6 C 0.015 3.985 7 H 0.088 0.912 8 C -0.003 4.003 9 O -0.305 6.305 10 C -0.015 4.015 11 C -0.109 4.109 12 N -0.241 5.241 13 C -0.095 4.095 14 C 0.182 3.818 15 H 0.072 0.928 16 O -0.354 6.354 17 C -0.611 4.611 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.209 1.209 25 O -0.043 6.043 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.186 0.814 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.013 7.591 -12.487 14.648 hybrid contribution 0.085 1.580 1.770 2.375 sum 1.098 9.171 -10.717 14.148 Atomic orbital electron populations 1.20281 0.85393 1.04235 1.03083 1.22476 0.94136 0.84453 1.05439 1.21427 0.92563 0.99176 1.10523 1.21484 0.98189 0.93604 1.09980 1.21946 0.83093 0.93358 1.05530 1.20859 0.90557 0.90817 0.96239 0.91201 1.22637 0.90875 0.92671 0.94091 1.87946 1.41793 1.34506 1.66231 1.22749 1.01877 0.87972 0.88859 1.22829 0.91935 0.98220 0.97928 1.62348 1.37920 1.13003 1.10857 1.23155 0.99167 1.01059 0.86099 1.19289 0.85102 0.89226 0.88231 0.92827 1.86540 1.23238 1.41543 1.84037 1.21668 1.47721 0.95756 0.95992 0.92801 1.25006 0.94446 0.94712 0.98390 1.70085 1.43008 1.02501 1.33780 0.86637 0.78085 0.78954 0.84840 1.19773 1.20821 1.20860 1.84113 1.15792 1.34171 1.70192 0.90320 0.89798 0.90111 0.83889 0.83909 0.88606 0.91878 0.88524 0.91931 0.94484 0.88096 0.95472 0.91583 0.81445 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 16 2 C -0.01 -0.20 7.32 -35.63 -0.26 -0.46 16 3 C -0.22 -2.97 10.81 -39.70 -0.43 -3.40 16 4 C -0.21 -3.08 10.80 -39.70 -0.43 -3.51 16 5 C 0.01 0.20 4.50 -35.62 -0.16 0.03 16 6 C 0.12 1.99 2.44 -68.75 -0.17 1.82 16 7 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 8 C 0.07 1.06 6.27 37.21 0.23 1.29 16 9 O -0.39 -5.81 10.83 -35.23 -0.38 -6.19 16 10 C 0.06 0.90 7.01 37.21 0.26 1.16 16 11 C 0.02 0.32 5.43 -3.71 -0.02 0.30 16 12 N -0.52 -9.63 4.41 -227.72 -1.00 -10.63 16 13 C 0.03 0.69 4.37 -3.82 -0.02 0.67 16 14 C 0.24 6.11 2.71 -27.89 -0.08 6.04 16 15 H 0.05 1.48 6.47 -51.93 -0.34 1.14 16 16 O -0.55 -14.60 12.61 -35.23 -0.44 -15.05 16 17 C -0.57 -15.89 8.76 -34.44 -0.30 -16.19 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 20 N -0.86 -25.39 12.84 55.43 0.71 -24.68 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 O -0.15 -2.56 10.39 5.72 0.06 -2.50 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.90 6.35 -51.93 -0.33 1.57 16 37 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.07 1.46 6.50 -51.93 -0.34 1.13 16 39 H 0.34 8.43 9.04 45.56 0.41 8.85 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -31.86 330.08 -7.40 -39.26 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.20 Total: 9.01 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.09 Total: -10.46 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.29 Total: -35.31 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.77 Total: -23.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.86 -7.40 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929668098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.245 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds