Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34514 * 125.79225 * 2 1 4 4 C 1.41376 * 106.84361 * 179.79263 * 3 2 1 5 5 C 1.34519 * 106.83904 * 0.37292 * 4 3 2 6 6 C 1.50701 * 125.78875 * 179.88824 * 5 4 3 7 7 H 1.08996 * 109.50658 * 339.80146 * 6 5 4 8 8 C 1.53099 * 109.54232 * 99.91158 * 6 5 4 9 9 O 1.43012 * 109.25896 * 176.80419 * 8 6 5 10 10 C 1.43009 * 113.73926 * 301.33256 * 9 8 6 11 11 C 1.53092 * 109.26413 * 58.66600 * 10 9 8 12 12 N 1.47007 * 109.50631 * 219.71731 * 6 5 4 13 13 C 1.46898 * 111.00434 * 57.62763 * 12 6 5 14 14 C 1.53002 * 109.47105 * 76.12299 * 13 12 6 15 15 H 1.09002 * 109.46803 * 53.92596 * 14 13 12 16 16 O 1.42901 * 109.47129 * 293.92990 * 14 13 12 17 17 C 1.50701 * 109.47256 * 173.92429 * 14 13 12 18 18 H 1.07999 * 119.99711 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99891 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00091 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00002 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47108 * 179.97438 * 21 19 17 23 23 H 1.48507 * 109.46828 * 300.00037 * 21 19 17 24 24 H 1.48503 * 109.47302 * 59.99979 * 21 19 17 25 25 O 1.34299 * 125.78862 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47181 * 300.00065 * 1 2 3 28 28 H 1.08999 * 109.47384 * 59.99941 * 1 2 3 29 29 H 1.07998 * 126.57714 * 0.04196 * 3 2 1 30 30 H 1.07994 * 126.58207 * 180.23557 * 4 3 2 31 31 H 1.09000 * 109.50511 * 296.73897 * 8 6 5 32 32 H 1.08999 * 109.50722 * 56.86979 * 8 6 5 33 33 H 1.09004 * 109.50615 * 178.60853 * 10 9 8 34 34 H 1.09005 * 109.50793 * 298.73399 * 10 9 8 35 35 H 1.08994 * 109.51531 * 183.21579 * 11 10 9 36 36 H 1.09005 * 109.50604 * 63.08869 * 11 10 9 37 37 H 1.09004 * 109.47132 * 316.12755 * 13 12 6 38 38 H 1.09004 * 109.47494 * 196.12597 * 13 12 6 39 39 H 0.96703 * 113.99240 * 299.99685 * 16 14 13 40 40 H 0.97006 * 119.99889 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0049 5 6 3.5813 -0.7122 -0.0008 6 6 4.7705 -1.6379 -0.0009 7 1 5.6511 -1.0992 -0.3507 8 6 5.0177 -2.1543 1.4190 9 8 6.0999 -3.0891 1.3993 10 6 5.8755 -4.2115 0.5420 11 6 5.6370 -3.7161 -0.8868 12 7 4.5059 -2.7769 -0.8919 13 6 4.2070 -2.3202 -2.2557 14 6 5.5046 -1.8989 -2.9483 15 1 6.2260 -2.7143 -2.8954 16 8 6.0403 -0.7460 -2.2957 17 6 5.2204 -1.5725 -4.3919 18 1 4.2148 -1.6567 -4.7766 19 6 6.2442 -1.1664 -5.2212 20 7 7.4686 -1.0634 -4.7525 21 14 5.8918 -0.7611 -7.0104 22 1 7.1513 -0.3524 -7.6826 23 1 5.3342 -1.9588 -7.6886 24 1 4.9098 0.3505 -7.0820 25 8 2.2924 -1.0894 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.9666 2.1204 0.0006 30 1 4.5212 1.2432 0.0098 31 1 5.2706 -1.3185 2.0714 32 1 4.1183 -2.6465 1.7890 33 1 6.7487 -4.8637 0.5602 34 1 5.0010 -4.7636 0.8865 35 1 5.4091 -4.5638 -1.5328 36 1 6.5314 -3.2105 -1.2508 37 1 3.5255 -1.4705 -2.2132 38 1 3.7423 -3.1310 -2.8168 39 1 5.4505 0.0203 -2.3043 40 1 8.1890 -0.7781 -5.3362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929668100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = -69.481816 kcal Electronic energy + Delta-G solvation = -23542.016693 eV Core-core repulsion = 20130.929342 eV Total energy + Delta-G solvation = -3411.087351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33791 -39.37401 -36.61464 -34.21851 -32.88125 -32.55983 -32.15076 -30.44449 -29.14007 -26.69102 -25.98717 -23.80484 -23.25495 -21.45389 -21.26938 -20.14311 -19.21239 -17.19946 -16.56541 -16.29671 -15.56380 -15.47553 -14.91286 -14.70209 -14.61260 -14.51199 -14.07478 -13.63155 -13.36112 -13.07528 -12.95519 -12.71698 -12.47846 -12.39731 -12.02936 -11.72274 -11.34059 -11.25214 -11.03091 -10.92965 -10.89138 -10.46038 -10.33199 -10.02118 -9.64189 -9.57730 -9.39011 -8.63116 -8.59826 -7.94907 -7.30870 -6.04264 -4.23236 1.99124 2.87712 3.18456 3.25956 3.31372 3.33353 4.07186 4.28001 4.38221 4.86343 5.10305 5.19145 5.22402 5.31804 5.37658 5.41762 5.45383 5.47645 5.61466 5.63150 5.71465 5.85737 5.97426 6.08317 6.11119 6.16954 6.21573 6.32705 6.34412 6.43995 6.59162 6.79268 6.85460 7.25533 7.34466 7.45181 7.55976 7.69640 7.81361 8.14633 8.78094 9.25066 9.52263 10.98850 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.006765 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.680133 B = 4137.951776 C = 5434.989340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.029 4.029 3 C -0.211 4.211 4 C -0.209 4.209 5 C 0.019 3.981 6 C 0.113 3.887 7 H 0.117 0.883 8 C 0.073 3.927 9 O -0.382 6.382 10 C 0.064 3.936 11 C 0.011 3.989 12 N -0.529 5.529 13 C 0.027 3.973 14 C 0.198 3.802 15 H 0.064 0.936 16 O -0.562 6.562 17 C -0.572 4.572 18 H 0.055 0.945 19 C 0.081 3.919 20 N -0.859 5.859 21 Si 0.889 3.111 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.276 1.276 25 O -0.160 6.160 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.344 0.656 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 -0.180 11.219 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.230 4.230 4 C -0.228 4.228 5 C -0.032 4.032 6 C 0.004 3.996 7 H 0.134 0.866 8 C -0.004 4.004 9 O -0.301 6.301 10 C -0.013 4.013 11 C -0.117 4.117 12 N -0.253 5.253 13 C -0.101 4.101 14 C 0.140 3.860 15 H 0.081 0.919 16 O -0.365 6.365 17 C -0.610 4.610 18 H 0.073 0.927 19 C -0.126 4.126 20 N -0.495 5.495 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.201 1.201 24 H -0.202 1.202 25 O -0.056 6.056 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.188 0.812 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.743 -1.101 11.574 14.547 hybrid contribution -0.180 1.234 -1.889 2.264 sum -8.923 0.133 9.685 13.170 Atomic orbital electron populations 1.20226 0.85690 1.03680 1.03039 1.22373 0.93923 0.84653 1.06969 1.21456 0.92769 0.99076 1.09680 1.21551 0.98151 0.93769 1.09368 1.22149 0.82506 0.93805 1.04730 1.21257 0.92296 0.91174 0.94869 0.86618 1.22661 0.90246 0.92588 0.94909 1.87966 1.41874 1.34368 1.65845 1.22714 1.01245 0.88129 0.89237 1.22840 0.94554 0.97129 0.97136 1.62665 1.37933 1.14082 1.10640 1.23057 1.00272 1.00049 0.86687 1.20046 0.89712 0.85972 0.90309 0.91865 1.86500 1.48220 1.22857 1.78965 1.21558 0.94770 1.49130 0.95586 0.92710 1.25024 0.94948 0.94327 0.98254 1.70057 0.99762 1.44264 1.35400 0.86743 0.77646 0.78937 0.85099 1.21168 1.20133 1.20169 1.84044 1.16276 1.34401 1.70849 0.90839 0.90195 0.90019 0.83962 0.83465 0.88676 0.92766 0.88689 0.92875 0.89818 0.91621 0.91738 0.90950 0.81156 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.42 36.01 0.38 -0.32 16 2 C -0.03 -0.41 7.32 -35.63 -0.26 -0.67 16 3 C -0.21 -3.02 10.81 -39.70 -0.43 -3.44 16 4 C -0.21 -3.29 10.80 -39.70 -0.43 -3.72 16 5 C 0.02 0.32 4.39 -35.62 -0.16 0.17 16 6 C 0.11 1.97 2.07 -68.75 -0.14 1.83 16 7 H 0.12 2.29 5.60 -51.93 -0.29 2.00 16 8 C 0.07 1.14 6.28 37.21 0.23 1.37 16 9 O -0.38 -6.33 10.83 -35.23 -0.38 -6.71 16 10 C 0.06 0.95 7.01 37.20 0.26 1.21 16 11 C 0.01 0.20 4.79 -3.71 -0.02 0.18 16 12 N -0.53 -9.80 4.73 -227.73 -1.08 -10.88 16 13 C 0.03 0.56 5.08 -3.82 -0.02 0.54 16 14 C 0.20 4.86 2.27 -27.88 -0.06 4.79 16 15 H 0.06 1.69 5.98 -51.93 -0.31 1.38 16 16 O -0.56 -13.87 9.91 -35.23 -0.35 -14.22 16 17 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.13 12.84 55.43 0.71 -24.42 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 O -0.16 -2.73 10.48 5.72 0.06 -2.67 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.35 6.23 -51.93 -0.32 1.02 16 37 H 0.06 1.40 6.40 -51.93 -0.33 1.07 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.34 7.97 9.04 45.56 0.41 8.38 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -30.88 323.74 -7.26 -38.15 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.04 Total: 11.50 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.05 Total: -11.80 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.37 Total: -35.30 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.67 Total: -23.59 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.88 -7.26 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929668100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.335 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds