Wall clock time and date at job start Tue Mar 31 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.50701 * 109.47034 * 313.80264 * 15 14 13 17 17 C 1.33644 * 126.03685 * 89.72081 * 16 15 14 18 18 N 1.31784 * 114.49957 * 179.78985 * 17 16 15 19 19 C 1.29035 * 117.12472 * 0.50983 * 18 17 16 20 20 S 1.70979 * 110.16546 * 359.72306 * 19 18 17 21 21 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 22 22 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 29 29 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 30 30 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 31 31 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 32 32 H 1.09004 * 109.47281 * 73.80215 * 15 14 13 33 33 H 1.09003 * 109.47290 * 193.80321 * 15 14 13 34 34 H 1.08000 * 122.75072 * 359.96737 * 17 16 15 35 35 H 1.07993 * 124.92078 * 179.75461 * 19 18 17 36 36 H 1.08999 * 109.48998 * 299.35229 * 21 14 13 37 37 H 1.09002 * 109.48626 * 179.28754 * 21 14 13 38 38 H 1.09001 * 109.48531 * 303.15255 * 22 11 10 39 39 H 1.09000 * 109.48854 * 63.21719 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.8091 -8.8621 2.0899 17 6 -2.0733 -8.4291 2.1078 18 7 -2.6875 -8.5833 3.2635 19 6 -2.0086 -9.1130 4.2245 20 16 -0.4278 -9.4885 3.6921 21 6 1.6048 -7.3594 -0.3380 22 6 2.4174 -6.0649 -0.2600 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.8718 -3.6005 -0.9002 27 1 2.8717 -3.6084 0.8798 28 1 1.4682 -5.1797 2.0700 29 1 0.0938 -4.2759 1.3889 30 1 -0.7649 -6.3431 0.3437 31 1 -0.5748 -6.5684 2.0995 32 1 -0.4473 -8.9002 -0.0129 33 1 0.8333 -9.6445 0.9742 34 1 -2.5532 -7.9914 1.2449 35 1 -2.3845 -9.2936 5.2206 36 1 0.9039 -7.2992 -1.1706 37 1 2.2783 -8.2030 -0.4895 38 1 2.9469 -5.9105 -1.2002 39 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931359233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:24 Heat of formation + Delta-G solvation = 57.923901 kcal Electronic energy + Delta-G solvation = -19652.521246 eV Core-core repulsion = 16722.004244 eV Total energy + Delta-G solvation = -2930.517002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.07089 -38.88135 -35.86376 -33.13191 -31.66579 -30.58184 -29.61342 -27.40413 -25.52984 -24.06530 -23.51011 -22.63527 -20.38480 -20.21660 -19.44023 -18.12963 -16.63726 -15.98564 -15.87445 -15.06407 -14.70033 -14.54825 -14.44685 -14.29155 -14.08817 -13.78018 -13.68353 -12.89146 -12.72112 -12.30809 -12.17565 -11.77459 -11.39338 -11.21079 -11.06695 -10.95990 -10.80332 -10.56055 -10.43976 -9.83997 -9.81515 -9.49774 -9.33674 -9.14868 -9.09046 -8.37297 -8.32240 -7.71889 -5.98853 -4.01132 0.48701 1.17001 1.57414 2.63741 3.31793 3.39183 3.43154 3.90601 4.15368 4.37623 4.55146 4.57074 4.89158 5.03267 5.06644 5.27179 5.28794 5.37061 5.44099 5.54060 5.57558 5.64793 5.77146 5.91335 5.94356 6.10143 6.18005 6.30353 6.41126 6.50847 6.90645 6.96392 7.01083 7.50692 7.50870 7.57620 7.80519 7.90291 8.08773 8.44431 9.06279 9.62545 11.12563 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.003403 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.571239 B = 8226.555712 C = 8870.989573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.059 3.941 13 C 0.057 3.943 14 N -0.536 5.536 15 C 0.131 3.869 16 C -0.210 4.210 17 C 0.036 3.964 18 N -0.469 5.469 19 C 0.009 3.991 20 S 0.140 5.860 21 C 0.060 3.940 22 C 0.056 3.944 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.174 0.826 35 H 0.197 0.803 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -22.091 4.965 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.070 4.070 13 C -0.071 4.071 14 N -0.261 5.261 15 C 0.001 3.999 16 C -0.332 4.332 17 C -0.116 4.116 18 N -0.182 5.182 19 C -0.289 4.289 20 S 0.392 5.608 21 C -0.068 4.068 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.191 0.809 35 H 0.214 0.786 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.289 -22.265 5.572 22.954 hybrid contribution -0.045 1.384 -0.608 1.512 sum -0.334 -20.882 4.964 21.466 Atomic orbital electron populations 1.69984 1.06023 1.26451 1.50757 1.24996 0.94826 0.99184 0.95320 0.86545 0.80091 0.83835 0.77575 1.19772 1.20992 1.21035 1.21233 0.93013 0.91053 1.50718 0.92753 1.19094 0.93981 0.90155 0.97713 1.22316 0.96721 0.88262 0.98972 1.62278 1.27629 1.02565 1.34047 1.22148 0.97468 0.96607 0.90761 1.22294 0.94212 0.89785 1.00804 1.62361 1.27184 1.01361 1.35204 1.20445 0.93661 0.93698 0.92092 1.25880 0.99156 1.08532 0.99619 1.21827 0.91392 1.01956 0.96438 1.66335 1.36867 1.15058 0.99955 1.28403 0.94440 1.02755 1.03259 1.84042 1.15446 1.56831 1.04475 1.22171 0.97005 0.97848 0.89735 1.22104 0.94189 0.90169 1.00791 0.93063 0.96544 0.95788 0.92104 0.96152 0.94780 0.89175 0.93888 0.90687 0.92500 0.89524 0.80931 0.78589 0.93767 0.90672 0.90533 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.73 4.91 -27.88 -0.14 0.60 16 10 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 11 N -0.54 -9.92 4.71 -234.47 -1.10 -11.03 16 12 C 0.06 1.03 5.41 -3.77 -0.02 1.01 16 13 C 0.06 0.82 4.82 -3.76 -0.02 0.80 16 14 N -0.54 -6.72 4.85 -235.91 -1.14 -7.86 16 15 C 0.13 1.30 5.82 -4.98 -0.03 1.27 16 16 C -0.21 -2.19 4.79 -35.92 -0.17 -2.36 16 17 C 0.04 0.41 9.61 -19.18 -0.18 0.22 16 18 N -0.47 -5.62 10.54 -15.75 -0.17 -5.79 16 19 C 0.01 0.08 12.23 51.59 0.63 0.71 16 20 S 0.14 1.25 23.22 -107.50 -2.50 -1.24 16 21 C 0.06 0.74 5.58 -3.77 -0.02 0.72 16 22 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.45 6.49 -51.93 -0.34 0.12 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.27 8.03 -51.93 -0.42 0.86 16 27 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.07 5.85 -51.93 -0.30 0.77 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.20 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -31.59 325.86 -10.68 -42.27 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.99 Total: -3.22 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.40 Total: -8.49 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -1.68 Total: -50.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.59 -10.68 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931359233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.194 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds