Wall clock time and date at job start Tue Mar 31 2020 05:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47048 * 232.51340 * 3 2 1 5 5 N 1.46901 * 109.47228 * 182.88353 * 4 3 2 6 6 C 1.46898 * 110.99840 * 199.37197 * 5 4 3 7 7 C 1.50698 * 109.47256 * 66.04867 * 6 5 4 8 8 H 1.08007 * 120.00122 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00314 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99487 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00038 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47145 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46940 * 119.99777 * 11 9 7 14 14 H 1.48496 * 109.47302 * 239.99968 * 11 9 7 15 15 C 1.46902 * 110.99939 * 75.41912 * 5 4 3 16 16 C 1.50700 * 109.47172 * 199.30142 * 15 5 4 17 17 N 1.30836 * 125.95777 * 270.06568 * 16 15 5 18 18 C 1.33240 * 109.82317 * 180.12335 * 17 16 15 19 19 N 1.30716 * 108.94887 * 359.58329 * 18 17 16 20 20 N 1.34429 * 125.96307 * 89.72995 * 16 15 5 21 21 C 1.46503 * 126.81965 * 0.02562 * 20 16 15 22 22 C 1.52997 * 109.47007 * 264.29889 * 21 20 16 23 23 F 1.39902 * 109.46986 * 184.68524 * 22 21 20 24 24 H 1.09001 * 109.47493 * 112.51368 * 3 2 1 25 25 H 1.09004 * 109.47528 * 352.51471 * 3 2 1 26 26 H 1.08994 * 109.47021 * 62.88244 * 4 3 2 27 27 H 1.08997 * 109.47205 * 302.88471 * 4 3 2 28 28 H 1.09001 * 109.47344 * 186.04598 * 6 5 4 29 29 H 1.08998 * 109.47455 * 306.04550 * 6 5 4 30 30 H 0.97010 * 119.99662 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.46778 * 79.30488 * 15 5 4 32 32 H 1.08994 * 109.47181 * 319.30143 * 15 5 4 33 33 H 1.08002 * 125.52793 * 179.85322 * 18 17 16 34 34 H 1.09004 * 109.47017 * 24.30188 * 21 20 16 35 35 H 1.08997 * 109.46814 * 144.30055 * 21 20 16 36 36 H 1.08997 * 109.47585 * 304.68797 * 22 21 20 37 37 H 1.09005 * 109.47197 * 64.68814 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8788 1.1446 5 7 4.5849 0.9351 1.1027 6 6 5.1326 1.3602 2.3978 7 6 4.8438 0.3064 3.4357 8 1 4.3067 -0.5895 3.1608 9 6 5.2652 0.4857 4.7362 10 7 5.9196 1.5762 5.0708 11 14 4.9066 -0.8203 6.0227 12 1 4.1617 -1.9415 5.3956 13 1 6.1849 -1.3269 6.5834 14 1 4.0875 -0.2305 7.1119 15 6 5.0473 1.8152 0.0212 16 6 6.4837 1.4974 -0.3056 17 7 7.5363 2.0461 0.2446 18 6 8.6442 1.5297 -0.2854 19 7 8.3106 0.6349 -1.1780 20 7 6.9071 0.5962 -1.2088 21 6 6.0705 -0.2569 -2.0565 22 6 5.9029 -1.6260 -1.3946 23 9 5.1945 -2.4749 -2.2518 24 1 2.9712 0.3943 -0.9493 25 1 2.9718 -1.0181 0.1339 26 1 2.7972 0.4563 2.0969 27 1 2.7122 1.8850 1.0388 28 1 6.2103 1.4971 2.3093 29 1 4.6702 2.3009 2.6968 30 1 6.2164 1.7023 5.9857 31 1 4.9685 2.8545 0.3399 32 1 4.4302 1.6586 -0.8635 33 1 9.6543 1.8027 -0.0177 34 1 5.0924 0.2065 -2.1856 35 1 6.5457 -0.3796 -3.0297 36 1 6.8846 -2.0533 -1.1898 37 1 5.3537 -1.5129 -0.4598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116919801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:22 Heat of formation + Delta-G solvation = 70.768147 kcal Electronic energy + Delta-G solvation = -22199.272155 eV Core-core repulsion = 18735.391696 eV Total energy + Delta-G solvation = -3463.880459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.135 amu Computer time = 7.39 seconds Orbital eigenvalues (eV) -47.76921 -41.88022 -37.71669 -36.22333 -34.68795 -32.78103 -32.03856 -30.53630 -29.45175 -27.68792 -25.54176 -23.88133 -23.23507 -21.59741 -21.06193 -19.73733 -17.56502 -17.21737 -16.53721 -16.26903 -16.06540 -15.58058 -15.17713 -14.87018 -14.66198 -14.41024 -14.10494 -14.04216 -13.65908 -13.22509 -13.11816 -12.54117 -12.33724 -12.13492 -12.01606 -11.79413 -11.62217 -11.54260 -11.12936 -10.91605 -10.76247 -10.70809 -10.47854 -10.03333 -9.69387 -9.54346 -9.33629 -9.25906 -8.51851 -7.70968 -6.08647 -4.11456 1.75490 2.35094 2.83831 2.88377 3.21700 3.26712 3.35312 3.37719 4.00792 4.27119 4.30976 4.37192 4.41932 4.83337 4.86279 4.92328 5.01432 5.08117 5.15138 5.26897 5.28142 5.36487 5.50789 5.65673 5.76568 5.79579 6.06593 6.36338 6.48425 6.65997 6.92248 7.05176 7.17590 7.62211 7.66487 7.87224 7.99705 8.32318 8.38406 8.94825 9.52880 11.01491 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.007032 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.748347 B = 3981.085490 C = 5375.756333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.217 3.783 3 C -0.029 4.029 4 C 0.064 3.936 5 N -0.531 5.531 6 C 0.190 3.810 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.060 3.940 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.118 3.882 16 C 0.312 3.688 17 N -0.526 5.526 18 C 0.204 3.796 19 N -0.331 5.331 20 N -0.377 5.377 21 C 0.107 3.893 22 C 0.044 3.956 23 F -0.210 7.210 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.038 0.962 28 H 0.053 0.947 29 H -0.003 1.003 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.214 0.786 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -1.617 -13.815 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.101 4.101 3 C -0.070 4.070 4 C -0.066 4.066 5 N -0.257 5.257 6 C 0.066 3.934 7 C -0.554 4.554 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.012 4.012 16 C 0.035 3.965 17 N -0.253 5.253 18 C -0.099 4.099 19 N -0.159 5.159 20 N -0.168 5.168 21 C -0.017 4.017 22 C -0.012 4.012 23 F -0.192 7.192 24 H 0.115 0.885 25 H 0.133 0.867 26 H 0.123 0.877 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.231 0.769 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.223 -2.222 -13.981 14.158 hybrid contribution 0.034 0.019 0.962 0.963 sum -0.188 -2.203 -13.019 13.206 Atomic orbital electron populations 1.81191 1.13183 1.09246 1.09032 1.29221 0.95298 0.92778 0.92831 1.19451 0.80933 1.04796 1.01802 1.21958 0.88420 0.97503 0.98692 1.62077 1.06962 1.49625 1.06995 1.19929 0.96738 0.94885 0.81879 1.21112 1.36734 1.04768 0.92789 0.91812 1.24949 0.95179 0.95596 0.98542 1.69973 1.37983 1.25981 1.18840 0.86525 0.78024 0.81766 0.81594 1.19685 1.21049 1.21098 1.20613 0.85564 0.98074 0.96989 1.24270 0.97400 0.87698 0.87137 1.70606 0.96912 1.30465 1.27309 1.25923 0.99452 0.92371 0.92130 1.77976 0.88767 1.23886 1.25239 1.50032 1.04564 1.30592 1.31605 1.22138 0.94953 0.90485 0.94088 1.22385 0.98191 0.87602 0.92992 1.92776 1.80946 1.72264 1.73178 0.88462 0.86715 0.87726 0.94372 0.92935 0.98498 0.92885 0.90882 0.89804 0.76943 0.87648 0.88110 0.89990 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.95 18.54 42.15 0.78 -6.17 16 2 C 0.22 2.74 15.43 -20.76 -0.32 2.42 16 3 C -0.03 -0.30 5.84 -29.52 -0.17 -0.47 16 4 C 0.06 0.90 4.75 -3.82 -0.02 0.88 16 5 N -0.53 -8.69 4.35 -237.52 -1.03 -9.72 16 6 C 0.19 4.31 4.55 -4.98 -0.02 4.29 16 7 C -0.52 -13.00 8.24 -34.44 -0.28 -13.29 16 8 H 0.06 1.56 7.31 -52.48 -0.38 1.18 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 11 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.12 1.62 5.12 -4.97 -0.03 1.59 16 16 C 0.31 4.82 6.94 -155.69 -1.08 3.74 16 17 N -0.53 -9.32 10.46 -11.97 -0.13 -9.45 16 18 C 0.20 3.13 13.03 -91.81 -1.20 1.93 16 19 N -0.33 -5.02 12.70 29.29 0.37 -4.64 16 20 N -0.38 -5.14 3.64 -58.34 -0.21 -5.35 16 21 C 0.11 1.04 6.82 -4.04 -0.03 1.01 16 22 C 0.04 0.46 7.88 37.16 0.29 0.76 16 23 F -0.21 -2.31 17.36 2.25 0.04 -2.27 16 24 H 0.10 0.71 6.67 -51.93 -0.35 0.36 16 25 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.10 1.75 6.58 -51.93 -0.34 1.41 16 27 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 28 H 0.05 1.35 6.84 -51.93 -0.36 0.99 16 29 H 0.00 -0.07 8.12 -51.93 -0.42 -0.49 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 32 H 0.08 0.79 5.35 -51.93 -0.28 0.51 16 33 H 0.21 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.11 0.75 6.95 -51.93 -0.36 0.39 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -32.08 327.99 -7.04 -39.12 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.57 Total: -1.99 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.95 Total: 4.37 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.52 Total: -59.83 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.08 -7.04 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116919801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.889 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.39 seconds