Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99865 * 2 1 4 4 H 1.48491 * 109.47295 * 269.99612 * 3 2 1 5 5 H 1.48495 * 109.47456 * 30.00122 * 3 2 1 6 6 H 1.48509 * 109.46682 * 149.99909 * 3 2 1 7 7 C 1.37875 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00133 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47096 * 185.08953 * 9 7 2 11 11 C 1.46899 * 111.00256 * 199.70887 * 10 9 7 12 12 C 1.50703 * 109.47341 * 166.89371 * 11 10 9 13 13 C 1.33325 * 125.94902 * 98.76287 * 12 11 10 14 14 N 1.32125 * 114.57513 * 180.02562 * 13 12 11 15 15 C 1.29680 * 116.86874 * 359.97438 * 14 13 12 16 16 N 1.38613 * 124.95368 * 180.02562 * 15 14 13 17 17 S 1.70969 * 110.09998 * 359.72893 * 15 14 13 18 18 C 1.46911 * 110.99921 * 75.75714 * 10 9 7 19 19 C 1.54957 * 110.92051 * 95.61320 * 18 10 9 20 20 C 1.54268 * 104.16178 * 156.29748 * 19 18 10 21 21 C 1.53881 * 106.63539 * 336.44276 * 20 19 18 22 22 C 1.54267 * 106.59979 * 359.97438 * 21 20 19 23 23 H 0.96997 * 120.00052 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.47303 * 65.08673 * 9 7 2 25 25 H 1.09004 * 109.46977 * 305.08663 * 9 7 2 26 26 H 1.08995 * 109.47102 * 286.89570 * 11 10 9 27 27 H 1.08999 * 109.46661 * 46.89501 * 11 10 9 28 28 H 1.07996 * 122.71320 * 0.02562 * 13 12 11 29 29 H 0.97005 * 119.99473 * 359.97438 * 16 15 14 30 30 H 0.96997 * 120.00759 * 179.97438 * 16 15 14 31 31 H 1.08992 * 110.67047 * 332.30367 * 18 10 9 32 32 H 1.08999 * 110.48354 * 37.64123 * 19 18 10 33 33 H 1.09007 * 110.52780 * 274.97032 * 19 18 10 34 34 H 1.08997 * 110.03754 * 217.13528 * 20 19 18 35 35 H 1.09003 * 110.03343 * 95.74613 * 20 19 18 36 36 H 1.09001 * 110.03186 * 119.26033 * 21 20 19 37 37 H 1.09001 * 110.02961 * 240.63998 * 21 20 19 38 38 H 1.09000 * 110.48644 * 142.28864 * 22 21 20 39 39 H 1.09003 * 110.48568 * 264.80247 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2007 -3.6131 0.1208 11 6 1.5970 -4.8723 -0.3351 12 6 2.6731 -5.9141 -0.5014 13 6 2.9831 -6.8666 0.3786 14 7 3.9685 -7.6624 0.0026 15 6 4.5041 -7.4257 -1.1545 16 7 5.5439 -8.1532 -1.7121 17 16 3.7353 -6.0905 -1.8956 18 6 2.6946 -3.7347 1.4990 19 6 1.8734 -4.7837 2.2905 20 6 2.8253 -5.2368 3.4167 21 6 4.2555 -4.9494 2.9269 22 6 4.1235 -4.3321 1.5193 23 1 -0.4850 0.8400 -0.0004 24 1 0.6948 -2.5968 -0.9339 25 1 0.5574 -2.5190 0.8390 26 1 0.8706 -5.2147 0.4018 27 1 1.0971 -4.7107 -1.2901 28 1 2.4702 -6.9785 1.3224 29 1 5.9251 -8.9029 -1.2286 30 1 5.8903 -7.9128 -2.5856 31 1 2.6727 -2.7682 2.0023 32 1 1.6122 -5.6260 1.6499 33 1 0.9756 -4.3292 2.7097 34 1 2.7019 -6.3035 3.6035 35 1 2.6220 -4.6726 4.3270 36 1 4.7459 -4.2452 3.5990 37 1 4.8263 -5.8766 2.8768 38 1 4.8669 -3.5479 1.3755 39 1 4.2286 -5.1012 0.7541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139229222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = 61.772674 kcal Electronic energy + Delta-G solvation = -20661.308229 eV Core-core repulsion = 17730.958122 eV Total energy + Delta-G solvation = -2930.350107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.94393 -38.22980 -34.87954 -34.42844 -32.52876 -30.11492 -28.27890 -27.47804 -26.41424 -24.53163 -23.16769 -21.58324 -20.37611 -19.72709 -18.66737 -18.50594 -16.33494 -16.07557 -15.72192 -15.55453 -15.09185 -14.65358 -14.47488 -14.04104 -13.72264 -13.00639 -12.82460 -12.66516 -12.14034 -11.92861 -11.65158 -11.21599 -10.98349 -10.84853 -10.80688 -10.67917 -10.61480 -10.45443 -10.17162 -9.91665 -9.82118 -9.62106 -9.35264 -9.22853 -8.81700 -8.40418 -7.58548 -7.17441 -6.00147 -4.01232 1.27515 1.39712 2.11009 3.22726 3.33685 3.39737 3.44039 3.52945 4.44756 4.87116 5.04539 5.16289 5.19385 5.34396 5.35938 5.51869 5.70479 5.83275 5.95538 6.00877 6.07742 6.15927 6.18178 6.26405 6.31117 6.39038 6.44694 6.49512 6.71093 6.83789 6.94147 6.96693 7.24584 7.26829 7.38065 7.86973 8.12352 8.18082 8.24338 8.56152 9.07987 9.63176 11.09946 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.005502 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.236743 B = 5087.581263 C = 5680.647640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.522 5.522 11 C 0.121 3.879 12 C -0.215 4.215 13 C 0.065 3.935 14 N -0.548 5.548 15 C 0.290 3.710 16 N -0.827 5.827 17 S 0.117 5.883 18 C 0.096 3.904 19 C -0.171 4.171 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.121 4.121 23 H 0.260 0.740 24 H 0.025 0.975 25 H -0.001 1.001 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.172 0.828 29 H 0.406 0.594 30 H 0.411 0.589 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -14.950 -0.579 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.245 5.245 11 C -0.009 4.009 12 C -0.339 4.339 13 C -0.085 4.085 14 N -0.273 5.273 15 C -0.082 4.082 16 N -0.380 5.380 17 S 0.364 5.636 18 C -0.014 4.014 19 C -0.210 4.210 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.159 4.159 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.188 0.812 29 H 0.237 0.763 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.175 -14.610 -1.509 16.809 hybrid contribution -0.335 0.526 1.246 1.394 sum 7.840 -14.084 -0.263 16.121 Atomic orbital electron populations 1.69956 1.06014 1.26690 1.51336 1.24973 0.94824 0.99202 0.95584 0.86529 0.79763 0.83229 0.78086 1.20703 1.21403 1.19874 1.21160 0.93618 0.89711 1.49497 0.91851 1.19785 0.89870 0.87334 0.96244 1.62207 1.39443 1.02367 1.20495 1.20543 0.91100 0.88576 1.00694 1.25387 1.06546 1.04820 0.97112 1.21362 0.94829 0.91904 1.00361 1.66400 1.14656 1.32142 1.14086 1.23556 0.95024 0.95946 0.93686 1.41399 1.37196 1.36360 1.23030 1.84069 1.31359 1.26602 1.21545 1.22566 0.92873 0.97721 0.88227 1.23349 0.98906 1.00796 0.97937 1.22001 0.95219 1.00019 0.98216 1.22071 0.96486 0.99940 0.97447 1.22622 0.97420 0.99948 0.95944 0.93005 0.95744 0.98265 0.92360 0.90474 0.81158 0.76271 0.75913 0.89181 0.90232 0.92071 0.92680 0.92369 0.92597 0.92644 0.92509 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -13.87 8.60 -34.44 -0.30 -14.17 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 4.85 4.67 -4.97 -0.02 4.82 16 10 N -0.52 -10.86 4.39 -227.09 -1.00 -11.86 16 11 C 0.12 2.13 5.10 -4.97 -0.03 2.11 16 12 C -0.22 -3.40 4.04 -36.02 -0.15 -3.54 16 13 C 0.07 0.98 8.17 -19.14 -0.16 0.83 16 14 N -0.55 -8.24 10.60 -15.21 -0.16 -8.40 16 15 C 0.29 3.84 8.58 -87.68 -0.75 3.09 16 16 N -0.83 -7.50 9.08 29.77 0.27 -7.23 16 17 S 0.12 1.65 23.13 -107.50 -2.49 -0.84 16 18 C 0.10 1.82 2.71 -65.68 -0.18 1.65 16 19 C -0.17 -2.76 4.95 -25.03 -0.12 -2.89 16 20 C -0.12 -1.64 6.45 -25.61 -0.17 -1.81 16 21 C -0.12 -1.79 6.80 -25.61 -0.17 -1.97 16 22 C -0.12 -2.10 5.86 -25.07 -0.15 -2.24 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.65 7.69 -51.93 -0.40 0.25 16 25 H 0.00 -0.01 8.00 -51.93 -0.42 -0.43 16 26 H 0.06 0.98 5.54 -51.93 -0.29 0.69 16 27 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 28 H 0.17 2.45 5.63 -52.49 -0.30 2.16 16 29 H 0.41 3.13 8.95 -40.82 -0.37 2.76 16 30 H 0.41 2.66 8.95 -40.82 -0.37 2.30 16 31 H 0.09 1.98 7.32 -51.93 -0.38 1.60 16 32 H 0.08 1.21 2.52 -51.93 -0.13 1.08 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.29 4.16 -51.93 -0.22 1.07 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -30.40 314.20 -10.55 -40.95 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.34 Total: 4.38 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.28 Total: -12.68 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.15 Total: -53.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.49 Total: -0.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.40 -10.55 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139229222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.719 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds