Wall clock time and date at job start Tue Mar 31 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.53003 * 109.46931 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46864 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00234 * 90.00335 * 5 4 3 7 7 H 1.08003 * 119.99828 * 319.81634 * 6 5 4 8 8 C 1.38803 * 120.00073 * 139.81504 * 6 5 4 9 9 N 1.31621 * 119.99926 * 158.00984 * 8 6 5 10 10 Si 1.86802 * 120.00220 * 338.00923 * 8 6 5 11 11 H 1.48500 * 109.46988 * 95.31679 * 10 8 6 12 12 H 1.48496 * 109.47212 * 215.31688 * 10 8 6 13 13 H 1.48494 * 109.46969 * 335.31620 * 10 8 6 14 14 C 1.46503 * 119.99941 * 270.00251 * 5 4 3 15 15 C 1.50702 * 109.47102 * 84.42700 * 14 5 4 16 16 C 1.38639 * 120.39779 * 95.03138 * 15 14 5 17 17 C 1.38598 * 118.57123 * 179.97438 * 16 15 14 18 18 N 1.32278 * 119.20321 * 0.02562 * 17 16 15 19 19 C 1.32548 * 120.73367 * 359.97438 * 18 17 16 20 20 S 1.76197 * 119.22074 * 180.02562 * 19 18 17 21 21 C 1.81003 * 100.00173 * 359.97438 * 20 19 18 22 22 N 1.32238 * 120.39696 * 274.75138 * 15 14 5 23 23 H 1.09001 * 109.47503 * 299.99467 * 1 2 3 24 24 H 1.09005 * 109.47476 * 59.99835 * 1 2 3 25 25 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47503 * 240.00533 * 2 1 3 27 27 H 1.08999 * 109.47703 * 120.00530 * 2 1 3 28 28 H 1.09000 * 109.46830 * 60.00474 * 3 2 1 29 29 H 1.08994 * 109.47658 * 300.00351 * 3 2 1 30 30 H 1.09000 * 109.46913 * 60.00603 * 4 3 2 31 31 H 1.09000 * 109.47073 * 300.00283 * 4 3 2 32 32 H 0.97006 * 119.99909 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47205 * 204.43482 * 14 5 4 34 34 H 1.09008 * 109.46981 * 324.42845 * 14 5 4 35 35 H 1.08007 * 120.71535 * 0.02682 * 16 15 14 36 36 H 1.08000 * 120.39956 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47295 * 300.00446 * 21 20 19 38 38 H 1.09003 * 109.46634 * 60.00495 * 21 20 19 39 39 H 1.09000 * 109.46898 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2860 3.4690 1.1874 7 1 3.6004 3.3410 2.0121 8 6 5.3979 4.2875 1.3299 9 7 5.4114 5.2243 2.2543 10 14 6.8754 4.0594 0.2098 11 1 6.7786 5.0004 -0.9349 12 1 8.1207 4.3325 0.9712 13 1 6.9012 2.6640 -0.2974 14 6 4.3028 3.5148 -1.2672 15 6 3.0136 4.1105 -1.7715 16 6 2.6967 5.4319 -1.4970 17 6 1.5014 5.9410 -1.9799 18 7 0.7029 5.1557 -2.6837 19 6 1.0354 3.8962 -2.9286 20 16 -0.0579 2.8856 -3.8711 21 6 -1.3843 4.0741 -4.1944 22 7 2.1737 3.3805 -2.4859 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9287 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 6.1886 5.7961 2.3542 33 1 5.0341 4.3083 -1.1135 34 1 4.6860 2.8045 -1.9999 35 1 3.3672 6.0516 -0.9200 36 1 1.2250 6.9663 -1.7832 37 1 -1.8031 4.4174 -3.2485 38 1 -0.9831 4.9253 -4.7445 39 1 -2.1654 3.5950 -4.7847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140035651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:17 Heat of formation + Delta-G solvation = 56.929823 kcal Electronic energy + Delta-G solvation = -20437.994633 eV Core-core repulsion = 17507.434524 eV Total energy + Delta-G solvation = -2930.560109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42370 -36.71054 -34.29267 -33.27825 -31.92341 -31.45654 -29.06874 -28.44235 -26.61405 -24.24540 -23.96246 -22.64931 -20.92880 -20.21723 -17.97486 -17.30952 -16.52498 -15.51508 -15.27457 -14.88852 -14.62870 -14.46730 -14.10494 -13.85095 -13.52464 -13.32296 -13.00442 -12.91374 -12.65184 -12.34561 -12.05788 -11.90274 -11.32937 -10.91535 -10.83468 -10.67009 -10.61989 -10.47282 -10.34644 -10.26424 -10.12676 -9.87371 -9.73556 -9.38037 -8.89578 -8.64220 -7.58729 -6.94150 -6.16084 -3.59602 1.24463 1.44614 1.49776 2.26230 3.19243 3.38032 3.44369 4.04721 4.38366 4.51919 4.90024 5.00419 5.09127 5.14644 5.19873 5.22369 5.46615 5.54672 5.59673 5.65404 5.79059 5.79294 5.96712 6.03740 6.21361 6.28031 6.34820 6.36000 6.39250 6.43504 6.60716 6.66548 6.75680 6.97294 7.18301 7.38857 7.90123 8.26873 8.32574 8.82575 9.53766 9.96439 10.98321 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.006767 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.491946 B = 4136.536133 C = 5230.377791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.153 3.847 5 N -0.587 5.587 6 C -0.271 4.271 7 H 0.078 0.922 8 C 0.042 3.958 9 N -0.889 5.889 10 Si 0.869 3.131 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.264 1.264 14 C 0.176 3.824 15 C 0.188 3.812 16 C -0.209 4.209 17 C 0.149 3.851 18 N -0.541 5.541 19 C 0.285 3.715 20 S -0.019 6.019 21 C -0.140 4.140 22 N -0.491 5.491 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.266 0.734 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -2.800 -10.540 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.184 4.184 4 C 0.027 3.973 5 N -0.307 5.307 6 C -0.400 4.400 7 H 0.096 0.904 8 C -0.160 4.160 9 N -0.528 5.528 10 Si 0.698 3.302 11 H -0.211 1.211 12 H -0.224 1.224 13 H -0.188 1.188 14 C 0.049 3.951 15 C 0.036 3.964 16 C -0.235 4.235 17 C -0.018 4.018 18 N -0.260 5.260 19 C -0.092 4.092 20 S 0.213 5.787 21 C -0.309 4.309 22 N -0.209 5.209 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.744 -4.423 -11.312 15.572 hybrid contribution 1.219 2.108 0.584 2.504 sum -8.525 -2.316 -10.728 13.897 Atomic orbital electron populations 1.21744 0.96681 1.00525 1.01594 1.21435 0.95187 0.97988 1.01036 1.22241 0.98722 0.95222 1.02246 1.20966 0.91896 0.84989 0.99417 1.44109 1.76578 1.09074 1.00960 1.18769 1.05689 1.24952 0.90602 0.90408 1.25543 0.97412 0.96655 0.96352 1.69885 1.30009 1.17648 1.35295 0.87020 0.83781 0.79318 0.80107 1.21111 1.22356 1.18790 1.20470 0.89245 0.96594 0.88830 1.23236 0.97309 0.89655 0.86150 1.22788 0.99823 0.98139 1.02740 1.23022 0.89592 0.99075 0.90125 1.68608 1.34354 1.04844 1.18198 1.24678 0.94799 0.91779 0.97939 1.85624 1.15599 1.15292 1.62168 1.23463 0.99251 1.02176 1.06012 1.68368 1.02685 1.37818 1.12055 0.93325 0.92796 0.93565 0.92574 0.92748 0.93004 0.91169 0.94222 0.92600 0.92422 0.90349 0.92020 0.83390 0.81925 0.89409 0.89473 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.15 0.37 -1.71 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.75 5.41 -26.73 -0.14 -2.89 16 4 C 0.15 3.11 5.70 -4.04 -0.02 3.08 16 5 N -0.59 -13.55 2.02 -174.60 -0.35 -13.90 16 6 C -0.27 -7.21 9.89 -15.06 -0.15 -7.35 16 7 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 8 C 0.04 1.15 5.25 -17.43 -0.09 1.05 16 9 N -0.89 -25.46 13.97 55.49 0.78 -24.68 16 10 Si 0.87 20.69 25.17 -169.99 -4.28 16.41 16 11 H -0.28 -6.46 6.70 56.52 0.38 -6.08 16 12 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.26 -6.21 7.11 56.52 0.40 -5.80 16 14 C 0.18 3.76 4.70 -5.19 -0.02 3.74 16 15 C 0.19 3.79 5.99 -82.27 -0.49 3.30 16 16 C -0.21 -3.90 9.83 -39.30 -0.39 -4.29 16 17 C 0.15 2.43 11.30 -17.23 -0.19 2.23 16 18 N -0.54 -9.17 9.14 -13.44 -0.12 -9.29 16 19 C 0.28 5.06 7.85 -90.83 -0.71 4.34 16 20 S -0.02 -0.27 22.89 -107.50 -2.46 -2.73 16 21 C -0.14 -1.48 9.62 101.05 0.97 -0.51 16 22 N -0.49 -9.57 8.22 -9.67 -0.08 -9.65 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.41 5.52 -51.93 -0.29 1.13 16 30 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 31 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.08 1.75 3.82 -51.93 -0.20 1.55 16 34 H 0.06 1.24 7.97 -51.92 -0.41 0.83 16 35 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 36 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.09 0.98 8.11 -51.92 -0.42 0.56 16 38 H 0.09 0.93 8.11 -51.91 -0.42 0.51 16 39 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -29.11 332.71 -8.50 -37.61 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.96 Total: 2.23 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.04 Total: -1.01 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.22 Total: -57.53 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.28 Total: 16.41 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.46 Total: -2.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.11 -8.50 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140035651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.542 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds