Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47491 * 2 1 4 4 N 1.46896 * 109.47283 * 179.70085 * 3 2 1 5 5 C 1.46906 * 110.99842 * 297.89274 * 4 3 2 6 6 C 1.50703 * 109.46990 * 293.08119 * 5 4 3 7 7 H 1.07999 * 120.00002 * 354.98072 * 6 5 4 8 8 C 1.37883 * 119.99718 * 174.98424 * 6 5 4 9 9 N 1.31510 * 119.99847 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99873 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47297 * 59.99348 * 10 8 6 12 12 H 1.48504 * 109.47166 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47195 * 299.99516 * 10 8 6 14 14 C 1.46895 * 111.00396 * 61.84915 * 4 3 2 15 15 C 1.50695 * 109.47169 * 66.04137 * 14 4 3 16 16 C 1.38643 * 120.39424 * 95.00647 * 15 14 4 17 17 C 1.38602 * 118.57034 * 179.72560 * 16 15 14 18 18 N 1.32274 * 119.20416 * 0.27089 * 17 16 15 19 19 C 1.32547 * 120.73196 * 0.02562 * 18 17 16 20 20 S 1.76208 * 119.22152 * 180.02562 * 19 18 17 21 21 C 1.80999 * 99.99793 * 359.97438 * 20 19 18 22 22 N 1.32248 * 120.40490 * 275.28878 * 15 14 4 23 23 H 1.09002 * 109.47263 * 59.99878 * 1 2 3 24 24 H 1.08995 * 109.47822 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46904 * 300.00173 * 1 2 3 26 26 H 1.09000 * 109.47391 * 240.00221 * 2 1 3 27 27 H 1.09002 * 109.47263 * 120.00122 * 2 1 3 28 28 H 1.09006 * 109.46882 * 59.69991 * 3 2 1 29 29 H 1.09003 * 109.47114 * 299.70285 * 3 2 1 30 30 H 1.08997 * 109.47038 * 53.08085 * 5 4 3 31 31 H 1.09007 * 109.46846 * 173.08184 * 5 4 3 32 32 H 0.97004 * 119.99737 * 180.02562 * 9 8 6 33 33 H 1.09010 * 109.46803 * 306.04592 * 14 4 3 34 34 H 1.09004 * 109.47399 * 186.05233 * 14 4 3 35 35 H 1.07998 * 120.71584 * 359.97438 * 16 15 14 36 36 H 1.07995 * 120.40037 * 180.25595 * 17 16 15 37 37 H 1.09000 * 109.47306 * 299.99787 * 21 20 19 38 38 H 1.08997 * 109.47396 * 60.00427 * 21 20 19 39 39 H 1.09002 * 109.46966 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0072 5 6 4.0294 0.8029 1.2231 6 6 3.6835 1.6475 2.4223 7 1 3.2042 2.6059 2.2877 8 6 3.9790 1.1966 3.6914 9 7 4.5623 0.0294 3.8553 10 14 3.5497 2.2432 5.1779 11 1 2.0835 2.4763 5.2123 12 1 3.9676 1.5387 6.4166 13 1 4.2561 3.5462 5.0866 14 6 4.0414 0.7933 -1.1982 15 6 3.6888 1.6172 -2.4097 16 6 4.5893 2.5424 -2.9151 17 6 4.2282 3.2757 -4.0344 18 7 3.0403 3.0762 -4.5810 19 6 2.1999 2.1879 -4.0696 20 16 0.6277 1.9539 -4.8301 21 6 0.7523 3.1492 -6.1836 22 7 2.5147 1.4704 -3.0004 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6723 1.9579 0.8873 29 1 1.6811 1.9548 -0.8927 30 1 3.5827 -0.1852 1.3335 31 1 5.1125 0.7057 1.1473 32 1 4.7699 -0.2879 4.7481 33 1 3.6075 -0.2018 -1.2967 34 1 5.1253 0.7106 -1.1177 35 1 5.5529 2.6858 -2.4490 36 1 4.9084 4.0013 -4.4552 37 1 0.9018 4.1480 -5.7737 38 1 1.5963 2.8884 -6.8221 39 1 -0.1664 3.1312 -6.7700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140038207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = 46.232406 kcal Electronic energy + Delta-G solvation = -19940.795980 eV Core-core repulsion = 17009.771996 eV Total energy + Delta-G solvation = -2931.023984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81950 -37.49409 -33.88358 -32.76681 -32.50461 -31.43508 -29.16214 -27.80208 -26.40943 -24.59394 -24.32275 -22.42792 -22.04044 -19.44055 -18.03087 -17.24977 -16.21838 -15.72305 -15.46695 -14.94783 -14.80130 -14.52731 -14.31088 -13.94745 -13.64896 -13.38531 -13.29223 -12.96147 -12.56680 -12.10237 -11.64192 -11.30404 -11.11996 -11.08266 -10.97190 -10.82360 -10.68565 -10.65584 -10.51113 -10.38257 -10.04515 -9.89469 -9.62602 -9.32011 -9.09616 -8.43250 -7.81260 -7.22985 -6.03451 -4.04295 0.88331 1.15341 1.21577 2.06736 3.33497 3.37462 3.40560 3.71536 4.17058 4.42405 4.55349 4.74388 4.98105 5.04157 5.12128 5.21483 5.30284 5.32778 5.60422 5.64177 5.67125 5.74424 5.99128 6.01095 6.03988 6.24346 6.35861 6.49994 6.54645 6.64820 6.80877 7.02518 7.05627 7.26902 7.42138 7.78146 7.95942 8.04541 8.15450 8.50382 9.02910 9.59640 11.07157 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.004304 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.834305 B = 6503.511384 C = 7027.978608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C 0.068 3.932 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.091 3.909 15 C 0.215 3.785 16 C -0.215 4.215 17 C 0.154 3.846 18 N -0.536 5.536 19 C 0.291 3.709 20 S -0.007 6.007 21 C -0.142 4.142 22 N -0.490 5.490 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.007 0.993 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 3.867 -17.793 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.061 4.061 4 N -0.252 5.252 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.038 4.038 15 C 0.065 3.935 16 C -0.241 4.241 17 C -0.013 4.013 18 N -0.254 5.254 19 C -0.085 4.085 20 S 0.226 5.774 21 C -0.312 4.312 22 N -0.207 5.207 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.168 0.832 36 H 0.185 0.815 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.620 3.380 -17.840 19.007 hybrid contribution 1.557 0.678 1.037 1.990 sum -4.064 4.059 -16.803 17.758 Atomic orbital electron populations 1.21604 0.96487 1.00526 1.01120 1.22061 0.95715 0.99919 1.01815 1.22054 0.87613 0.95085 1.01331 1.62443 1.07356 1.54055 1.01350 1.19820 0.95043 0.93696 0.84898 1.21063 1.39113 1.04221 0.89924 0.92028 1.24951 0.95382 0.95130 0.98968 1.69940 1.42285 1.18947 1.22650 0.86584 0.78837 0.80351 0.81784 1.20281 1.21374 1.20215 1.21110 1.00579 0.94717 0.87373 1.21902 0.87300 0.91175 0.93113 1.22723 1.03353 0.99028 0.98986 1.23098 0.91886 0.95140 0.91206 1.68669 1.04745 1.18963 1.33070 1.24810 0.99172 0.91668 0.92899 1.85837 1.10287 1.50528 1.30742 1.23510 1.06173 1.02039 0.99460 1.68417 1.19058 1.25236 1.08029 0.93272 0.93751 0.93087 0.92621 0.91076 0.90411 0.92520 0.97531 0.95621 0.92878 0.92701 0.89256 0.83212 0.81498 0.89271 0.89351 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.15 0.37 -1.93 16 2 C -0.16 -2.98 5.28 -26.73 -0.14 -3.12 16 3 C 0.07 1.38 4.90 -3.83 -0.02 1.36 16 4 N -0.53 -11.19 4.69 -237.51 -1.11 -12.30 16 5 C 0.19 4.76 4.53 -4.97 -0.02 4.74 16 6 C -0.50 -13.88 8.39 -34.44 -0.29 -14.17 16 7 H 0.06 1.70 7.37 -52.49 -0.39 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.09 1.62 5.11 -4.98 -0.03 1.59 16 15 C 0.21 3.51 5.72 -82.27 -0.47 3.04 16 16 C -0.22 -2.92 9.83 -39.30 -0.39 -3.31 16 17 C 0.15 1.89 11.30 -17.23 -0.19 1.69 16 18 N -0.54 -7.43 9.14 -13.44 -0.12 -7.55 16 19 C 0.29 4.43 7.85 -90.84 -0.71 3.71 16 20 S -0.01 -0.09 22.90 -107.50 -2.46 -2.55 16 21 C -0.14 -1.25 9.62 101.05 0.97 -0.28 16 22 N -0.49 -8.27 8.90 -9.67 -0.09 -8.36 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 27 H 0.07 1.54 6.29 -51.93 -0.33 1.21 16 28 H 0.08 1.73 6.97 -51.93 -0.36 1.37 16 29 H 0.06 1.13 6.25 -51.93 -0.32 0.81 16 30 H 0.01 0.18 6.02 -51.93 -0.31 -0.13 16 31 H 0.03 0.68 7.91 -51.92 -0.41 0.27 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.00 6.06 -51.92 -0.31 0.68 16 34 H 0.09 1.46 7.84 -51.93 -0.41 1.06 16 35 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.09 0.81 8.11 -51.92 -0.42 0.39 16 38 H 0.09 0.77 8.11 -51.92 -0.42 0.35 16 39 H 0.10 0.64 8.14 -51.91 -0.42 0.22 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -30.46 331.91 -9.77 -40.24 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.69 Total: -0.34 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.02 Total: -5.18 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.59 Total: -53.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.46 Total: -2.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.46 -9.77 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140038207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.469 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds