Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46768 * 2 1 4 4 C 1.53000 * 109.46882 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46925 * 181.42384 * 4 3 2 6 6 C 1.46902 * 110.99880 * 61.26241 * 5 4 3 7 7 C 1.50699 * 109.47149 * 66.03826 * 6 5 4 8 8 H 1.07992 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99601 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00336 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99805 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47046 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47336 * 120.00022 * 11 9 7 14 14 H 1.48504 * 109.47295 * 240.00334 * 11 9 7 15 15 C 1.46896 * 111.00611 * 297.30290 * 5 4 3 16 16 C 1.50695 * 109.47497 * 288.30364 * 15 5 4 17 17 C 1.35166 * 125.61092 * 95.52109 * 16 15 5 18 18 C 1.40305 * 107.13255 * 180.02562 * 17 16 15 19 19 C 1.36651 * 106.69969 * 0.02562 * 18 17 16 20 20 C 1.46464 * 125.99705 * 180.02562 * 19 18 17 21 21 O 1.21628 * 120.00136 * 359.97438 * 20 19 18 22 22 O 1.34896 * 120.00010 * 179.97438 * 20 19 18 23 23 O 1.33913 * 125.60993 * 275.22627 * 16 15 5 24 24 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46784 * 299.99705 * 1 2 3 26 26 H 1.08990 * 109.47335 * 60.00094 * 1 2 3 27 27 H 1.08995 * 109.47200 * 239.99958 * 2 1 3 28 28 H 1.09005 * 109.46898 * 119.99954 * 2 1 3 29 29 H 1.09005 * 109.47176 * 59.99946 * 3 2 1 30 30 H 1.09002 * 109.47495 * 300.00174 * 3 2 1 31 31 H 1.09003 * 109.46876 * 61.43260 * 4 3 2 32 32 H 1.08992 * 109.47465 * 301.42694 * 4 3 2 33 33 H 1.08998 * 109.47206 * 186.04380 * 6 5 4 34 34 H 1.09011 * 109.46778 * 306.04320 * 6 5 4 35 35 H 0.96998 * 119.99996 * 180.02562 * 10 9 7 36 36 H 1.09008 * 109.46981 * 48.30007 * 15 5 4 37 37 H 1.08998 * 109.47092 * 168.29965 * 15 5 4 38 38 H 1.08008 * 126.43661 * 359.97438 * 17 16 15 39 39 H 1.07999 * 126.65822 * 180.02562 * 18 17 16 40 40 H 0.96699 * 117.00000 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0595 2.8272 0.0351 6 6 3.6128 3.5133 1.2547 7 6 4.2598 2.8741 2.4563 8 1 4.9355 2.0418 2.3269 9 6 3.9888 3.3521 3.7209 10 7 3.1655 4.3654 3.8786 11 14 4.7913 2.5603 5.2104 12 1 5.6693 1.4478 4.7668 13 1 5.6028 3.5729 5.9324 14 1 3.7403 2.0309 6.1162 15 6 3.6425 3.5631 -1.1659 16 6 4.4222 3.0662 -2.3558 17 6 4.0065 2.1243 -3.2315 18 6 5.0284 1.9611 -4.1790 19 6 6.0297 2.8225 -3.8289 20 6 7.3008 2.9976 -4.5352 21 8 7.5388 2.3407 -5.5308 22 8 8.2075 3.8874 -4.0816 23 8 5.6387 3.4890 -2.7227 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9510 -0.9017 32 1 3.9330 0.9069 0.8777 33 1 3.8970 4.5644 1.2051 34 1 2.5290 3.4336 1.3402 35 1 2.9752 4.7018 4.7682 36 1 2.5777 3.4049 -1.3375 37 1 3.8337 4.6269 -1.0247 38 1 3.0649 1.5958 -3.2062 39 1 5.0244 1.2857 -5.0218 40 1 9.0315 3.9681 -4.5812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140947130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = -81.547957 kcal Electronic energy + Delta-G solvation = -22056.335150 eV Core-core repulsion = 18644.724572 eV Total energy + Delta-G solvation = -3411.610578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66407 -39.98414 -37.75514 -36.28678 -34.05864 -33.14199 -32.63990 -30.80103 -28.45042 -27.57713 -25.33603 -23.76673 -22.89274 -21.59134 -21.26869 -20.56160 -19.47385 -18.47570 -17.60566 -16.56559 -16.35475 -15.52001 -15.31305 -15.12422 -14.67261 -14.58726 -13.86880 -13.78639 -13.45983 -13.18036 -13.05508 -12.91378 -12.55463 -12.22768 -11.96796 -11.77089 -11.33367 -11.19514 -11.12057 -11.04572 -10.79736 -10.74607 -10.64137 -10.54223 -10.04474 -9.97059 -9.82012 -9.29267 -8.58785 -8.47109 -7.36511 -6.08174 -4.09004 0.83912 2.28170 2.44985 2.86459 3.23218 3.28328 3.36452 3.41185 4.38528 4.68164 4.87997 4.94084 5.13455 5.23909 5.25887 5.29065 5.46602 5.48334 5.57414 5.68595 5.74445 5.88154 5.93506 6.03903 6.05903 6.12315 6.19790 6.20268 6.35617 6.37053 6.48725 6.65089 6.84123 6.98906 7.18323 7.28304 7.70337 7.71162 7.96074 8.06196 8.41901 8.97931 9.55310 11.02607 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.004688 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.524271 B = 5971.702065 C = 7357.137672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.159 4.159 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.110 3.890 16 C 0.082 3.918 17 C -0.236 4.236 18 C -0.095 4.095 19 C -0.090 4.090 20 C 0.576 3.424 21 O -0.506 6.506 22 O -0.502 6.502 23 O -0.138 6.138 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -4.082 -14.003 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.253 5.253 6 C 0.066 3.934 7 C -0.544 4.544 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.018 4.018 16 C 0.028 3.972 17 C -0.256 4.256 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.422 3.578 21 O -0.397 6.397 22 O -0.313 6.313 23 O -0.032 6.032 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.415 -3.935 -13.736 14.295 hybrid contribution -0.028 -0.385 0.471 0.609 sum 0.386 -4.320 -13.265 13.956 Atomic orbital electron populations 1.21771 0.96505 1.00870 1.01652 1.21412 0.95256 0.97307 1.01572 1.22268 0.98591 0.96674 1.02234 1.22136 0.91781 0.90950 1.01886 1.62339 1.59439 1.02073 1.01459 1.19862 0.94615 0.94285 0.84657 1.21128 1.26694 1.16535 0.89994 0.91811 1.24947 0.95316 0.95124 0.99023 1.69950 1.35682 1.25329 1.22783 0.86467 0.79188 0.79351 0.82596 1.19658 1.21007 1.21115 1.20796 0.94546 0.99719 0.86708 1.23300 0.82803 0.94752 0.96386 1.21591 1.02601 1.03669 0.97698 1.21901 0.91564 0.97942 1.00057 1.20473 0.96159 1.03744 0.93634 1.18886 0.81733 0.76412 0.80817 1.90975 1.77520 1.46203 1.24986 1.84722 1.30778 1.57796 1.58050 1.84166 1.30581 1.52421 1.36065 0.93353 0.92657 0.93242 0.92729 0.91906 0.90238 0.93057 0.92672 0.89670 0.95098 0.97808 0.92938 0.90950 0.88982 0.82497 0.82197 0.72558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.58 5.93 -26.73 -0.16 -1.74 16 3 C -0.16 -2.51 4.58 -26.73 -0.12 -2.64 16 4 C 0.06 1.08 5.01 -3.82 -0.02 1.06 16 5 N -0.53 -10.60 4.65 -237.52 -1.10 -11.71 16 6 C 0.19 4.58 4.49 -4.98 -0.02 4.56 16 7 C -0.50 -13.52 8.50 -34.44 -0.29 -13.81 16 8 H 0.06 1.72 7.11 -52.49 -0.37 1.35 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 11 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.11 1.82 5.37 -4.98 -0.03 1.79 16 16 C 0.08 1.28 6.24 -35.40 -0.22 1.06 16 17 C -0.24 -3.12 9.81 -39.90 -0.39 -3.52 16 18 C -0.09 -1.24 10.62 -39.38 -0.42 -1.66 16 19 C -0.09 -1.34 7.18 -36.84 -0.26 -1.60 16 20 C 0.58 7.86 8.30 34.04 0.28 8.15 16 21 O -0.51 -7.51 17.65 -19.36 -0.34 -7.85 16 22 O -0.50 -5.67 13.44 -42.47 -0.57 -6.24 16 23 O -0.14 -2.32 10.67 4.74 0.05 -2.27 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.50 6.23 -51.93 -0.32 1.18 16 30 H 0.05 0.74 6.30 -51.93 -0.33 0.41 16 31 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 32 H 0.08 1.69 6.82 -51.93 -0.35 1.34 16 33 H 0.03 0.81 7.86 -51.93 -0.41 0.40 16 34 H 0.00 0.11 6.01 -51.92 -0.31 -0.21 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 1.06 5.90 -51.92 -0.31 0.76 16 37 H 0.09 1.52 7.81 -51.93 -0.41 1.12 16 38 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 39 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.42 2.30 9.11 45.56 0.42 2.72 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -31.01 336.94 -7.39 -38.40 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.84 Total: 1.71 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.38 Total: -8.33 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.37 Total: -36.63 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.86 Total: -16.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.01 -7.39 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140947130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.148 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds