Wall clock time and date at job start Tue Mar 31 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46882 * 2 1 4 4 N 1.46902 * 109.46925 * 181.42384 * 3 2 1 5 5 C 1.46902 * 110.99880 * 61.26241 * 4 3 2 6 6 C 1.50699 * 109.47149 * 66.03826 * 5 4 3 7 7 H 1.07992 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99601 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00336 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47046 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47336 * 120.00022 * 10 8 6 13 13 H 1.48504 * 109.47295 * 240.00334 * 10 8 6 14 14 C 1.46896 * 111.00611 * 297.30290 * 4 3 2 15 15 C 1.50695 * 109.47497 * 288.30364 * 14 4 3 16 16 C 1.35166 * 125.61092 * 95.52109 * 15 14 4 17 17 C 1.40305 * 107.13255 * 180.02562 * 16 15 14 18 18 C 1.36651 * 106.69969 * 0.02562 * 17 16 15 19 19 C 1.46468 * 125.99861 * 179.97438 * 18 17 16 20 20 O 1.21628 * 120.00042 * 0.02562 * 19 18 17 21 21 O 1.34892 * 120.00140 * 179.97438 * 19 18 17 22 22 C 1.45195 * 117.00052 * 180.02562 * 21 19 18 23 23 O 1.33913 * 125.60993 * 275.22627 * 15 14 4 24 24 H 1.09005 * 109.47374 * 60.00023 * 1 2 3 25 25 H 1.09005 * 109.46701 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47294 * 299.99669 * 1 2 3 27 27 H 1.09005 * 109.47176 * 240.00260 * 2 1 3 28 28 H 1.09002 * 109.47495 * 120.00488 * 2 1 3 29 29 H 1.09003 * 109.46876 * 61.43260 * 3 2 1 30 30 H 1.08992 * 109.47465 * 301.42694 * 3 2 1 31 31 H 1.08998 * 109.47206 * 186.04380 * 5 4 3 32 32 H 1.09005 * 109.46349 * 306.04267 * 5 4 3 33 33 H 0.96998 * 119.99996 * 180.02562 * 9 8 6 34 34 H 1.09008 * 109.46981 * 48.30007 * 14 4 3 35 35 H 1.09000 * 109.47555 * 168.29712 * 14 4 3 36 36 H 1.08008 * 126.43661 * 359.97438 * 16 15 14 37 37 H 1.07997 * 126.66072 * 180.02562 * 17 16 15 38 38 H 1.09004 * 109.47429 * 60.00390 * 22 21 19 39 39 H 1.09001 * 109.47349 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.47420 * 299.99934 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5085 1.4427 -0.0344 5 6 4.0066 0.7933 -1.2544 6 6 3.6196 1.6169 -2.4556 7 1 3.0600 2.5313 -2.3258 8 6 3.9799 1.2027 -3.7204 9 7 4.6609 0.0888 -3.8785 10 14 3.5008 2.2239 -5.2094 11 1 2.7446 3.4222 -4.7653 12 1 4.7259 2.6518 -5.9312 13 1 2.6514 1.4098 -6.1155 14 6 4.0635 0.8036 1.1662 15 6 3.8548 1.7039 2.3565 16 6 2.8282 1.6255 3.2323 17 6 3.0149 2.6428 4.1802 18 6 4.1608 3.3000 3.8304 19 6 4.7490 4.4405 4.5366 20 8 4.2089 4.8834 5.5323 21 8 5.8901 4.9989 4.0833 22 6 6.4161 6.1253 4.8334 23 8 4.6589 2.7097 2.7239 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6977 1.9488 0.9026 30 1 1.6559 1.9637 -0.8768 31 1 5.0923 0.7109 -1.2048 32 1 3.5702 -0.2019 -1.3402 33 1 4.9147 -0.2023 -4.7683 34 1 3.5594 -0.1476 1.3374 35 1 5.1301 0.6293 1.0251 36 1 2.0161 0.9138 3.2066 37 1 2.3768 2.8639 5.0230 38 1 6.6288 5.8135 5.8560 39 1 7.3335 6.4788 4.3627 40 1 5.6807 6.9297 4.8444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142624648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:02 Heat of formation + Delta-G solvation = -66.822664 kcal Electronic energy + Delta-G solvation = -22016.113458 eV Core-core repulsion = 18605.141417 eV Total energy + Delta-G solvation = -3410.972041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64038 -40.23685 -37.64352 -36.62589 -33.12438 -32.83219 -32.40254 -30.66270 -28.39373 -27.05810 -26.31636 -24.31591 -22.61748 -22.21977 -21.55853 -20.45712 -19.41978 -18.38452 -17.12194 -16.80786 -16.35717 -15.87941 -15.42926 -14.98637 -14.69001 -14.42575 -14.03719 -13.60396 -13.44977 -13.32451 -13.11977 -12.91918 -12.66014 -12.34604 -12.19762 -11.62902 -11.41557 -11.15545 -11.05496 -10.98579 -10.98154 -10.91785 -10.71844 -10.59559 -10.04312 -9.95864 -9.82179 -9.28795 -8.56174 -8.46009 -7.35225 -6.07519 -4.08333 0.86191 2.26944 2.33653 2.87964 3.04263 3.28853 3.36893 3.41733 4.39058 4.61398 4.82701 4.90470 4.92645 5.00793 5.05348 5.29166 5.32973 5.40448 5.43162 5.55315 5.60566 5.72192 5.76685 5.85235 5.95441 6.01239 6.10344 6.23161 6.30719 6.38178 6.44250 6.62620 6.84460 6.97494 7.19138 7.28995 7.57101 7.71624 7.97138 8.07207 8.42907 8.98683 9.55942 11.03287 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.004213 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.555079 B = 6644.196418 C = 7690.085648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.061 3.939 4 N -0.530 5.530 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.111 3.889 15 C 0.082 3.918 16 C -0.236 4.236 17 C -0.096 4.096 18 C -0.088 4.088 19 C 0.558 3.442 20 O -0.498 6.498 21 O -0.346 6.346 22 C 0.037 3.963 23 O -0.138 6.138 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.004 0.996 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 3.624 15.284 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.067 4.067 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.017 4.017 15 C 0.027 3.973 16 C -0.255 4.255 17 C -0.115 4.115 18 C -0.138 4.138 19 C 0.404 3.596 20 O -0.388 6.388 21 O -0.262 6.262 22 C -0.057 4.057 23 O -0.032 6.032 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.437 4.285 15.278 15.932 hybrid contribution -0.575 -0.242 -0.669 0.915 sum -2.012 4.042 14.609 15.291 Atomic orbital electron populations 1.21643 0.96227 1.00807 1.01385 1.22184 0.95889 1.00098 1.02156 1.22147 0.87898 0.94784 1.01895 1.62331 1.06930 1.54615 1.01469 1.19863 0.95667 0.93247 0.84666 1.21136 1.35035 1.08181 0.90006 0.91797 1.24951 0.95260 0.95199 0.99034 1.69951 1.38903 1.22147 1.22770 0.86462 0.78254 0.80279 0.82576 1.19652 1.21007 1.21117 1.20792 1.02543 0.91714 0.86689 1.23290 0.89420 0.88208 0.96402 1.21584 1.02297 1.03962 0.97697 1.21890 0.95114 0.94450 1.00091 1.20523 0.99226 1.00517 0.93553 1.19218 0.78677 0.80386 0.81363 1.90916 1.61871 1.61398 1.24631 1.86709 1.38690 1.46105 1.54697 1.23334 0.99466 0.86352 0.96540 1.84162 1.45477 1.37556 1.36036 0.92611 0.93498 0.93439 0.90293 0.93091 0.92652 0.89675 0.95070 0.97826 0.92938 0.90968 0.88969 0.82512 0.82225 0.91717 0.87716 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.16 -2.65 5.30 -26.73 -0.14 -2.79 16 3 C 0.06 1.10 5.01 -3.82 -0.02 1.08 16 4 N -0.53 -10.71 4.65 -237.52 -1.10 -11.82 16 5 C 0.19 4.60 4.50 -4.98 -0.02 4.58 16 6 C -0.50 -13.59 8.50 -34.44 -0.29 -13.89 16 7 H 0.06 1.73 7.11 -52.49 -0.37 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 10 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.11 1.84 5.37 -4.98 -0.03 1.82 16 15 C 0.08 1.29 6.24 -35.40 -0.22 1.07 16 16 C -0.24 -3.18 9.81 -39.90 -0.39 -3.57 16 17 C -0.10 -1.29 10.62 -39.38 -0.42 -1.71 16 18 C -0.09 -1.36 7.18 -36.84 -0.26 -1.62 16 19 C 0.56 8.31 7.93 34.05 0.27 8.58 16 20 O -0.50 -7.77 16.66 -19.36 -0.32 -8.10 16 21 O -0.35 -4.78 10.58 -42.46 -0.45 -5.22 16 22 C 0.04 0.34 10.57 101.05 1.07 1.41 16 23 O -0.14 -2.36 10.67 4.74 0.05 -2.31 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.51 6.23 -51.93 -0.32 1.18 16 28 H 0.05 0.74 6.30 -51.93 -0.33 0.41 16 29 H 0.06 0.91 6.66 -51.93 -0.35 0.57 16 30 H 0.08 1.71 6.82 -51.93 -0.35 1.36 16 31 H 0.03 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.00 0.10 6.01 -51.93 -0.31 -0.21 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.07 1.07 5.90 -51.92 -0.31 0.77 16 35 H 0.09 1.54 7.82 -51.93 -0.41 1.13 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -30.36 337.08 -6.89 -37.26 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.67 Total: -0.90 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.19 Total: -5.15 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.37 Total: -36.84 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.72 Total: -15.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.36 -6.89 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142624648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.567 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds