Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47473 * 2 1 4 4 C 1.53006 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46738 * 184.28459 * 4 3 2 6 6 C 1.36928 * 120.00139 * 276.17900 * 5 4 3 7 7 H 1.07997 * 120.00213 * 355.15530 * 6 5 4 8 8 C 1.38812 * 120.00051 * 175.15477 * 6 5 4 9 9 N 1.31621 * 120.00195 * 52.09662 * 8 6 5 10 10 Si 1.86808 * 120.00252 * 232.09690 * 8 6 5 11 11 H 1.48497 * 109.46885 * 60.00128 * 10 8 6 12 12 H 1.48497 * 109.46786 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46597 * 299.99961 * 10 8 6 14 14 C 1.46504 * 119.99779 * 96.17978 * 5 4 3 15 15 C 1.50706 * 109.47006 * 52.19473 * 14 5 4 16 16 C 1.38671 * 120.00054 * 83.54378 * 15 14 5 17 17 O 1.35897 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38681 * 119.99848 * 179.97438 * 16 15 14 19 19 C 1.38667 * 120.00145 * 359.95528 * 18 16 15 20 20 O 1.35889 * 120.00266 * 180.02562 * 19 18 16 21 21 C 1.38684 * 119.99781 * 0.27564 * 19 18 16 22 22 C 1.38673 * 120.00013 * 359.51351 * 21 19 18 23 23 O 1.35896 * 119.99973 * 180.25542 * 22 21 19 24 24 H 1.08998 * 109.46813 * 59.99537 * 1 2 3 25 25 H 1.08999 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46575 * 299.99850 * 1 2 3 27 27 H 1.09005 * 109.47196 * 239.99682 * 2 1 3 28 28 H 1.09005 * 109.47080 * 120.00252 * 2 1 3 29 29 H 1.08993 * 109.46996 * 59.99954 * 3 2 1 30 30 H 1.09000 * 109.46748 * 300.00041 * 3 2 1 31 31 H 1.08994 * 109.47032 * 64.28681 * 4 3 2 32 32 H 1.08998 * 109.46630 * 304.28246 * 4 3 2 33 33 H 0.96996 * 120.00527 * 185.22135 * 9 8 6 34 34 H 1.08999 * 109.47290 * 292.19748 * 14 5 4 35 35 H 1.09001 * 109.47433 * 172.19209 * 14 5 4 36 36 H 0.96701 * 113.99842 * 266.64702 * 17 16 15 37 37 H 1.08000 * 119.99422 * 179.97438 * 18 16 15 38 38 H 0.96703 * 114.00332 * 89.99952 * 20 19 18 39 39 H 1.07999 * 119.99338 * 179.72812 * 21 19 18 40 40 H 0.96704 * 113.99522 * 263.85088 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8197 0.1026 6 6 4.1659 3.5941 -1.0216 7 1 3.9658 3.1666 -1.9930 8 6 4.5321 4.9286 -0.9127 9 7 5.6146 5.2615 -0.2422 10 14 3.4883 6.2523 -1.7179 11 1 2.1148 6.2101 -1.1552 12 1 4.0896 7.5845 -1.4555 13 1 3.4308 6.0143 -3.1826 14 6 4.4320 3.3685 1.4086 15 6 5.4052 2.4376 2.0849 16 6 6.7570 2.5099 1.7844 17 8 7.2042 3.4199 0.8796 18 6 7.6526 1.6536 2.4073 19 6 7.1964 0.7257 3.3312 20 8 8.0740 -0.1130 3.9419 21 6 5.8438 0.6501 3.6282 22 6 4.9489 1.5093 3.0087 23 8 3.6242 1.4388 3.3036 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 3.9330 0.9966 -0.9267 32 1 3.9337 0.8633 0.8483 33 1 5.8296 6.1968 -0.1014 34 1 3.5405 3.4739 2.0268 35 1 4.8975 4.3447 1.2729 36 1 7.2695 3.0781 -0.0226 37 1 8.7053 1.7097 2.1728 38 1 8.4408 0.2339 4.7667 39 1 5.4881 -0.0755 4.3446 40 1 3.1107 0.9052 2.6816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144514722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = -79.109711 kcal Electronic energy + Delta-G solvation = -23241.781824 eV Core-core repulsion = 19830.276977 eV Total energy + Delta-G solvation = -3411.504848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.91871 -37.73912 -37.00343 -36.13759 -34.23332 -33.98524 -31.53211 -29.97116 -28.85607 -27.83445 -25.23028 -23.89268 -22.08874 -21.76083 -20.80129 -19.86830 -18.85918 -17.21846 -16.67188 -16.42603 -16.18893 -15.29921 -14.99682 -14.72222 -14.41425 -14.17979 -13.66353 -13.52820 -13.38777 -13.34728 -12.67783 -12.27798 -12.17167 -12.03651 -11.49000 -11.13602 -11.05333 -10.83537 -10.70079 -10.62988 -10.50889 -10.37525 -10.32276 -9.98672 -9.87191 -9.72986 -9.62524 -8.24780 -8.13245 -7.85410 -7.08411 -6.01145 -2.99747 1.55912 1.64422 3.43890 3.56185 3.63390 3.82024 4.17531 4.53853 4.84536 4.98517 5.15845 5.25944 5.30125 5.44223 5.49878 5.54377 5.64301 5.72896 5.85684 6.06664 6.14171 6.20111 6.21470 6.24731 6.28052 6.43291 6.49866 6.60867 6.73972 6.77052 6.85335 6.91890 7.08509 7.28074 7.60762 7.79694 7.82165 8.01826 8.21146 8.67522 9.05015 9.80614 10.28380 10.94953 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.007956 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.947570 B = 3518.653456 C = 5325.745656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.153 3.847 5 N -0.582 5.582 6 C -0.288 4.288 7 H 0.079 0.921 8 C 0.033 3.967 9 N -0.810 5.810 10 Si 0.824 3.176 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.285 1.285 14 C 0.160 3.840 15 C -0.135 4.135 16 C 0.167 3.833 17 O -0.452 6.452 18 C -0.198 4.198 19 C 0.114 3.886 20 O -0.501 6.501 21 C -0.192 4.192 22 C 0.127 3.873 23 O -0.493 6.493 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.257 0.743 34 H 0.021 0.979 35 H 0.135 0.865 36 H 0.393 0.607 37 H 0.127 0.873 38 H 0.385 0.615 39 H 0.125 0.875 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -9.464 5.560 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.179 4.179 4 C 0.026 3.974 5 N -0.303 5.303 6 C -0.413 4.413 7 H 0.097 0.903 8 C -0.169 4.169 9 N -0.448 5.448 10 Si 0.650 3.350 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.211 1.211 14 C 0.035 3.965 15 C -0.138 4.138 16 C 0.121 3.879 17 O -0.262 6.262 18 C -0.217 4.217 19 C 0.070 3.930 20 O -0.310 6.310 21 C -0.212 4.212 22 C 0.081 3.919 23 O -0.304 6.304 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.145 0.855 38 H 0.240 0.760 39 H 0.143 0.857 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.004 -8.947 5.972 10.756 hybrid contribution -0.694 0.355 -0.718 1.060 sum -0.691 -8.591 5.254 10.094 Atomic orbital electron populations 1.21762 0.96555 1.00661 1.01740 1.21529 0.95294 0.98223 1.01113 1.22218 0.98965 0.94401 1.02357 1.20726 0.91869 0.86465 0.98353 1.44164 1.73068 1.09654 1.03392 1.18880 1.44467 0.91001 0.86974 0.90332 1.24502 0.96612 0.97397 0.98424 1.70564 1.16448 1.17722 1.40089 0.87440 0.84722 0.83084 0.79764 1.21499 1.22091 1.21057 1.20586 0.92964 0.98781 0.84176 1.21758 0.96069 0.99188 0.96777 1.18083 0.89634 0.87895 0.92336 1.84883 1.86296 1.35139 1.19875 1.21751 1.00771 0.96966 1.02244 1.17836 0.87905 0.91485 0.95791 1.84802 1.60839 1.43940 1.41421 1.21398 0.93123 1.01769 1.04868 1.17989 0.83639 0.94798 0.95428 1.84771 1.16544 1.74371 1.54692 0.92934 0.93536 0.92946 0.92539 0.92878 0.92502 0.91858 0.94282 0.95101 0.93259 0.96077 0.84783 0.74899 0.85541 0.76035 0.85737 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.14 -2.31 5.50 -26.73 -0.15 -2.46 16 4 C 0.15 2.86 5.40 -4.04 -0.02 2.84 16 5 N -0.58 -13.05 2.74 -174.60 -0.48 -13.53 16 6 C -0.29 -7.22 9.55 -15.06 -0.14 -7.36 16 7 H 0.08 2.01 8.06 -52.49 -0.42 1.58 16 8 C 0.03 0.85 4.59 -17.43 -0.08 0.77 16 9 N -0.81 -20.83 9.49 55.49 0.53 -20.31 16 10 Si 0.82 19.99 29.70 -169.99 -5.05 14.94 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.16 3.62 5.39 -5.19 -0.03 3.60 16 15 C -0.13 -2.71 4.59 -104.30 -0.48 -3.19 16 16 C 0.17 3.29 6.67 -39.26 -0.26 3.03 16 17 O -0.45 -9.46 10.84 -19.42 -0.21 -9.67 16 18 C -0.20 -3.39 9.92 -39.26 -0.39 -3.78 16 19 C 0.11 1.83 6.70 -39.26 -0.26 1.56 16 20 O -0.50 -6.76 13.50 -19.39 -0.26 -7.02 16 21 C -0.19 -3.13 9.92 -39.26 -0.39 -3.52 16 22 C 0.13 2.28 5.61 -39.26 -0.22 2.06 16 23 O -0.49 -8.32 12.42 -19.41 -0.24 -8.56 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.03 0.54 4.84 -51.93 -0.25 0.29 16 33 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 34 H 0.02 0.49 7.34 -51.93 -0.38 0.11 16 35 H 0.14 3.45 4.29 -51.93 -0.22 3.23 16 36 H 0.39 7.82 9.06 45.56 0.41 8.23 16 37 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.38 3.27 9.06 45.56 0.41 3.68 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.38 5.39 7.77 45.56 0.35 5.74 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -28.00 329.62 -6.42 -34.42 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -3.46 Total: 14.40 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.21 Total: -9.64 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.05 Total: -33.83 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.71 Total: -25.25 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.05 Total: 14.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.00 -6.42 -34.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144514722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.694 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds