Wall clock time and date at job start Tue Mar 31 2020 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47389 * 2 1 4 4 S 1.81401 * 109.47369 * 119.99792 * 2 1 3 5 5 C 1.76198 * 102.99784 * 65.00184 * 4 2 1 6 6 C 1.39641 * 120.08035 * 180.02562 * 5 4 2 7 7 C 1.38335 * 117.96380 * 179.97438 * 6 5 4 8 8 C 1.39603 * 117.96990 * 359.97438 * 7 6 5 9 9 N 1.39369 * 120.07271 * 179.97438 * 8 7 6 10 10 C 1.46500 * 119.99318 * 359.97438 * 9 8 7 11 11 C 1.53002 * 109.46615 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47045 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47340 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99979 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00084 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00166 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99823 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47148 * 59.99953 * 17 15 13 19 19 H 1.48498 * 109.47168 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46996 * 300.00210 * 17 15 13 21 21 N 1.32283 * 119.86359 * 359.97438 * 8 7 6 22 22 N 1.28344 * 122.18697 * 0.02562 * 21 8 7 23 23 H 1.08996 * 109.47127 * 300.00050 * 1 2 3 24 24 H 1.08996 * 109.47010 * 59.99965 * 1 2 3 25 25 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47458 * 239.99984 * 2 1 3 27 27 H 1.08994 * 109.47284 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46466 * 299.99942 * 3 2 1 29 29 H 1.09004 * 109.46833 * 59.99602 * 3 2 1 30 30 H 1.08002 * 121.01904 * 0.02562 * 6 5 4 31 31 H 1.07994 * 121.01570 * 179.72520 * 7 6 5 32 32 H 0.96993 * 120.00269 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47544 * 300.00318 * 10 9 8 34 34 H 1.08998 * 109.47262 * 60.01159 * 10 9 8 35 35 H 1.09003 * 109.47565 * 300.00071 * 11 10 9 36 36 H 1.09000 * 109.47224 * 60.00484 * 11 10 9 37 37 H 1.08993 * 109.47447 * 300.00260 * 12 11 10 38 38 H 1.09000 * 109.46753 * 60.00148 * 12 11 10 39 39 H 0.96997 * 120.00097 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5828 -2.5104 1.2362 6 6 1.8639 -3.4903 2.1905 7 6 1.4093 -4.7752 1.9542 8 6 0.6975 -5.0117 0.7767 9 7 0.2196 -6.2901 0.4943 10 6 0.4647 -7.3875 1.4334 11 6 -0.1598 -8.6737 0.8887 12 6 0.0954 -9.8198 1.8697 13 6 -0.5202 -11.0865 1.3335 14 1 -1.0411 -11.0754 0.3875 15 6 -0.4176 -12.2599 2.0502 16 7 0.2171 -12.2736 3.2019 17 14 -1.1801 -13.8302 1.3852 18 1 -0.5714 -14.1581 0.0710 19 1 -0.9324 -14.9425 2.3373 20 1 -2.6432 -13.6381 1.2189 21 7 0.4775 -4.0199 -0.0704 22 7 0.8991 -2.8276 0.1485 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 2.4185 -3.2521 3.0861 31 1 1.6026 -5.5720 2.6571 32 1 -0.2744 -6.4533 -0.3242 33 1 1.5386 -7.5287 1.5551 34 1 0.0181 -7.1468 2.3981 35 1 -1.2338 -8.5329 0.7666 36 1 0.2870 -8.9144 -0.0760 37 1 1.1692 -9.9609 1.9921 38 1 -0.3517 -9.5789 2.8341 39 1 0.2890 -13.0990 3.7063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:27 Heat of formation + Delta-G solvation = 33.784413 kcal Electronic energy + Delta-G solvation = -18516.641807 eV Core-core repulsion = 15585.078038 eV Total energy + Delta-G solvation = -2931.563769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84020 -36.84731 -35.01449 -33.89896 -33.09291 -32.05966 -30.09327 -27.49412 -26.69523 -24.88253 -23.90088 -22.50862 -21.91495 -20.56874 -18.17567 -17.67150 -17.12717 -16.36469 -16.09012 -15.46509 -14.83320 -14.62872 -14.61185 -14.36853 -14.04693 -13.63364 -13.44044 -12.57902 -12.50216 -12.42566 -12.34938 -11.91062 -11.67256 -11.61205 -11.13088 -11.00591 -10.85347 -10.85017 -10.66299 -10.44008 -10.36808 -9.91871 -9.63221 -9.54560 -9.23888 -8.66939 -8.44513 -7.39339 -6.09670 -4.12784 0.81088 1.04196 1.28779 2.04089 3.13737 3.27990 3.32787 3.35270 3.56842 4.38356 4.43972 4.54757 4.60468 4.61689 4.65273 4.91366 5.01767 5.26542 5.30408 5.39040 5.39331 5.51751 5.52624 5.56414 5.62928 5.70772 5.82805 5.87233 5.92683 6.11466 6.42465 6.47009 6.84626 7.03657 7.51969 7.59330 7.63365 7.88056 8.29310 8.75400 8.93199 9.52012 11.01546 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.061340 B = 0.002363 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.362141 B =11847.108199 C =12192.614474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 C -0.135 4.135 4 S -0.074 6.074 5 C -0.004 4.004 6 C -0.057 4.057 7 C -0.163 4.163 8 C 0.346 3.654 9 N -0.706 5.706 10 C 0.119 3.881 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.307 5.307 22 N -0.205 5.205 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.409 0.591 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 24.164 -2.856 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C -0.194 4.194 4 S 0.160 5.840 5 C -0.264 4.264 6 C -0.090 4.090 7 C -0.198 4.198 8 C 0.101 3.899 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.159 4.159 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.160 5.160 22 N -0.050 5.050 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.041 24.835 -3.120 25.354 hybrid contribution -0.624 -2.175 -0.219 2.274 sum 3.416 22.660 -3.339 23.158 Atomic orbital electron populations 1.22091 0.92553 1.04050 1.02073 1.23190 0.99906 0.98605 0.98086 1.21660 1.01683 0.93060 1.03019 1.85268 1.70372 0.97284 1.31112 1.24140 1.04986 0.99974 0.97343 1.21733 0.97024 0.91420 0.98791 1.21849 1.01211 0.98281 0.98436 1.20127 0.90535 0.88320 0.90897 1.44921 1.58933 1.04217 1.25741 1.21829 1.00702 0.85862 0.92055 1.21882 0.99781 0.93197 1.01018 1.19025 0.97383 0.91060 0.93753 1.21149 1.35444 0.93647 1.06026 0.92632 1.25019 0.95315 0.99155 0.94918 1.69937 1.42199 1.27672 1.13511 0.86623 0.79775 0.82668 0.78750 1.20192 1.21230 1.20196 1.72730 1.21891 0.95043 1.26309 1.73118 1.06211 1.10140 1.15496 0.92157 0.91892 0.90541 0.88420 0.91688 0.90734 0.91696 0.83226 0.82846 0.75528 0.91850 0.91837 0.92400 0.92402 0.96267 0.96266 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.03 37.16 0.34 -1.05 16 2 C -0.07 -0.62 2.90 -26.73 -0.08 -0.70 16 3 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 4 S -0.07 -0.77 21.35 -107.50 -2.30 -3.06 16 5 C 0.00 -0.05 6.92 -16.81 -0.12 -0.17 16 6 C -0.06 -0.66 9.96 -39.02 -0.39 -1.05 16 7 C -0.16 -2.05 9.41 -39.04 -0.37 -2.41 16 8 C 0.35 5.04 7.75 -154.58 -1.20 3.84 16 9 N -0.71 -10.01 5.74 -60.21 -0.35 -10.36 16 10 C 0.12 1.79 4.92 -4.04 -0.02 1.77 16 11 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 12 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 17 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 N -0.31 -4.83 11.52 31.29 0.36 -4.47 16 22 N -0.20 -3.01 8.63 31.47 0.27 -2.74 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.91 5.97 -51.93 -0.31 0.60 16 26 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.15 1.67 6.84 -52.49 -0.36 1.31 16 32 H 0.41 5.55 8.60 -40.82 -0.35 5.20 16 33 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 34 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -29.92 339.16 -9.40 -39.32 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.04 Total: 0.62 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.18 Total: -15.25 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 1.02 Total: -42.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.92 -9.40 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.107 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds