Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.39371 * 119.99783 * 275.27782 * 13 3 2 15 15 C 1.39602 * 120.06616 * 359.44529 * 14 13 3 16 16 C 1.38335 * 117.96631 * 179.78637 * 15 14 13 17 17 C 1.39641 * 117.96319 * 0.48493 * 16 15 14 18 18 S 1.76196 * 120.08419 * 179.72748 * 17 16 15 19 19 C 1.81400 * 103.00383 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47316 * 175.00010 * 19 18 17 21 21 C 1.53004 * 109.46984 * 295.00230 * 19 18 17 22 22 N 1.32341 * 119.83926 * 359.74720 * 17 16 15 23 23 N 1.28350 * 122.16962 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 25 25 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 26 26 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 28 28 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 29 29 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 31 31 H 1.07994 * 121.02243 * 0.02562 * 15 14 13 32 32 H 1.08002 * 121.02194 * 180.25017 * 16 15 14 33 33 H 1.09007 * 109.46666 * 54.99664 * 19 18 17 34 34 H 1.09005 * 109.47050 * 60.00012 * 20 19 18 35 35 H 1.08999 * 109.46764 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46923 * 299.99870 * 20 19 18 37 37 H 1.09000 * 109.47034 * 59.99666 * 21 19 18 38 38 H 1.09005 * 109.46646 * 179.97438 * 21 19 18 39 39 H 1.08991 * 109.47113 * 299.99597 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5975 0.1472 -0.2351 11 1 6.3976 0.2178 -2.6512 12 1 6.4994 2.2815 -1.3823 13 7 1.6526 2.0975 1.2519 14 6 0.3916 2.6786 1.3730 15 6 -0.4989 2.6476 0.2984 16 6 -1.7406 3.2336 0.4676 17 6 -2.0214 3.8285 1.6994 18 16 -3.5828 4.5975 1.9733 19 6 -3.4476 5.1997 3.6791 20 6 -4.6950 6.0115 4.0337 21 6 -3.3260 4.0090 4.6321 22 7 -1.1117 3.8137 2.6604 23 7 0.0382 3.2651 2.5046 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8291 -0.0611 -2.9500 30 1 2.2721 2.1230 1.9978 31 1 -0.2284 2.1771 -0.6353 32 1 -2.4690 3.2344 -0.3297 33 1 -2.5642 5.8315 3.7723 34 1 -5.5784 5.3797 3.9404 35 1 -4.6139 6.3730 5.0589 36 1 -4.7816 6.8598 3.3547 37 1 -2.4373 3.4306 4.3794 38 1 -3.2443 4.3709 5.6571 39 1 -4.2093 3.3773 4.5388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = 47.429905 kcal Electronic energy + Delta-G solvation = -19751.446657 eV Core-core repulsion = 16820.474601 eV Total energy + Delta-G solvation = -2930.972056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.42285 -36.82676 -34.78164 -33.23419 -32.71067 -31.33207 -30.07138 -27.33462 -26.73738 -24.35671 -23.62231 -22.76532 -21.69061 -19.96931 -18.11673 -17.30730 -16.67432 -16.16367 -15.77563 -15.06799 -14.83907 -14.57953 -14.08763 -13.61492 -13.37169 -13.13167 -12.96802 -12.78929 -12.34436 -12.04947 -12.01165 -11.47887 -11.46099 -11.42012 -11.11933 -11.03269 -10.77994 -10.62219 -10.35775 -10.27173 -10.10991 -9.94442 -9.71765 -9.28393 -9.06934 -8.63687 -8.07511 -6.83672 -6.30796 -4.39708 1.31640 1.56294 1.63797 2.37577 3.17782 3.22986 3.25033 3.86939 4.07580 4.25776 4.77142 4.82879 4.96824 5.01209 5.09207 5.19022 5.23790 5.43635 5.50433 5.59134 5.76310 5.81916 5.98759 5.99881 6.04318 6.08113 6.19336 6.27825 6.35285 6.46527 6.69930 6.73206 6.98487 7.21501 7.51212 7.59061 7.84138 8.00446 8.41218 8.67340 9.24394 9.31163 10.74865 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.003623 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.524117 B = 7725.913193 C = 7950.163225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.273 3.727 4 H 0.043 0.957 5 C -0.535 4.535 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.905 3.095 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.355 3.645 15 C -0.160 4.160 16 C -0.070 4.070 17 C -0.014 4.014 18 S -0.087 6.087 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.148 4.148 22 N -0.208 5.208 23 N -0.325 5.325 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.040 0.960 29 H 0.267 0.733 30 H 0.401 0.599 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 5.530 6.270 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.061 0.939 5 C -0.573 4.573 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.732 3.268 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.310 5.310 14 C 0.108 3.892 15 C -0.195 4.195 16 C -0.101 4.101 17 C -0.276 4.276 18 S 0.146 5.854 19 C -0.196 4.196 20 C -0.193 4.193 21 C -0.207 4.207 22 N -0.052 5.052 23 N -0.179 5.179 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.124 0.876 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.235 0.765 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.086 5.851 6.705 15.825 hybrid contribution 1.956 -0.655 -0.588 2.145 sum -11.130 5.196 6.117 13.722 Atomic orbital electron populations 1.22203 0.99182 0.99802 0.99901 1.22074 0.91979 1.00050 1.03282 1.18941 0.95252 0.88829 0.79890 0.93933 1.21120 0.90210 1.39385 1.06589 0.91766 1.24859 0.98994 0.94430 0.95177 1.69831 1.35523 1.37436 1.09412 0.86442 0.84312 0.78501 0.77564 1.20010 1.21018 1.20052 1.45539 1.10447 1.56411 1.18634 1.20238 0.88468 0.89642 0.90816 1.22225 0.93670 1.02417 1.01173 1.21617 0.96938 0.95227 0.96354 1.23885 1.00662 1.07130 0.95936 1.85085 1.13472 1.68992 1.17837 1.23121 1.02513 1.00376 0.93593 1.21649 0.95977 0.99648 1.02037 1.22085 1.03501 0.96961 0.98125 1.72992 0.96246 1.11057 1.24952 1.72702 1.10360 1.14603 1.20203 0.94156 0.93235 0.94441 0.87624 0.94142 0.92272 0.76462 0.82162 0.83942 0.88586 0.91830 0.90973 0.91803 0.90387 0.92190 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.22 37.16 0.31 -2.55 16 2 C -0.13 -2.92 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.17 2.20 -69.08 -0.15 6.02 16 4 H 0.04 1.03 6.49 -51.93 -0.34 0.70 16 5 C -0.53 -13.33 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -22.84 11.29 55.43 0.63 -22.22 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 13 N -0.68 -13.99 5.19 -54.86 -0.28 -14.27 16 14 C 0.36 6.97 6.56 -154.59 -1.01 5.96 16 15 C -0.16 -2.85 6.79 -39.04 -0.27 -3.11 16 16 C -0.07 -1.11 9.96 -39.02 -0.39 -1.50 16 17 C -0.01 -0.24 6.92 -16.81 -0.12 -0.35 16 18 S -0.09 -1.15 21.35 -107.50 -2.30 -3.44 16 19 C -0.07 -0.78 2.90 -26.73 -0.08 -0.85 16 20 C -0.13 -1.15 9.20 37.16 0.34 -0.81 16 21 C -0.15 -1.74 9.03 37.16 0.34 -1.41 16 22 N -0.21 -3.82 8.63 31.47 0.27 -3.55 16 23 N -0.32 -6.47 11.52 31.29 0.36 -6.11 16 24 H 0.04 0.75 5.38 -51.93 -0.28 0.47 16 25 H 0.05 0.87 6.34 -51.93 -0.33 0.54 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.11 2.53 5.95 -51.93 -0.31 2.23 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.40 7.98 8.67 -40.82 -0.35 7.63 16 31 H 0.16 2.84 4.14 -52.49 -0.22 2.62 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.14 5.98 -51.93 -0.31 0.83 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -26.04 322.27 -8.54 -34.58 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.48 Total: 9.02 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.57 Total: -13.66 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.97 Total: -46.15 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.30 Total: -3.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.04 -8.54 -34.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.007 kcal (2) G-P(sol) polarization free energy of solvation -26.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds