Wall clock time and date at job start Tue Mar 31 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47236 * 2 1 4 4 C 1.52998 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47197 * 180.02562 * 4 3 2 6 6 C 1.36905 * 119.99559 * 269.99949 * 5 4 3 7 7 H 1.07998 * 119.99905 * 145.42397 * 6 5 4 8 8 C 1.38813 * 119.99769 * 325.42267 * 6 5 4 9 9 N 1.31570 * 120.00131 * 337.62257 * 8 6 5 10 10 Si 1.86802 * 119.99775 * 157.62904 * 8 6 5 11 11 H 1.48492 * 109.47055 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47023 * 119.99870 * 10 8 6 13 13 H 1.48500 * 109.47046 * 239.99447 * 10 8 6 14 14 C 1.38794 * 120.00559 * 89.99608 * 5 4 3 15 15 C 1.39262 * 120.04788 * 171.16934 * 14 5 4 16 16 N 1.32055 * 120.08482 * 179.97438 * 15 14 5 17 17 C 1.32054 * 120.18653 * 0.02572 * 16 15 14 18 18 C 1.39289 * 120.08753 * 359.97438 * 17 16 15 19 19 S 1.76201 * 120.04532 * 179.97438 * 18 17 16 20 20 C 1.81399 * 103.00185 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47324 * 180.02562 * 20 19 18 22 22 N 1.32768 * 119.91184 * 359.97438 * 18 17 16 23 23 H 1.09001 * 109.47465 * 300.00644 * 1 2 3 24 24 H 1.09006 * 109.47080 * 59.99990 * 1 2 3 25 25 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47070 * 239.99971 * 2 1 3 27 27 H 1.08995 * 109.46802 * 119.99610 * 2 1 3 28 28 H 1.09003 * 109.46988 * 59.99620 * 3 2 1 29 29 H 1.08997 * 109.46869 * 300.00090 * 3 2 1 30 30 H 1.08994 * 109.47092 * 59.99428 * 4 3 2 31 31 H 1.09004 * 109.46617 * 299.99773 * 4 3 2 32 32 H 0.96998 * 119.99697 * 175.80746 * 9 8 6 33 33 H 1.07994 * 119.95284 * 0.02614 * 15 14 5 34 34 H 1.08000 * 119.95634 * 179.97438 * 17 16 15 35 35 H 1.09009 * 109.46935 * 299.99892 * 20 19 18 36 36 H 1.09000 * 109.47318 * 59.99238 * 20 19 18 37 37 H 1.09004 * 109.46543 * 299.99963 * 21 20 19 38 38 H 1.09000 * 109.47087 * 59.99365 * 21 20 19 39 39 H 1.09003 * 109.47434 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2870 3.4694 -1.1841 7 1 4.0989 4.5296 -1.2666 8 6 4.7606 2.7611 -2.2801 9 7 5.3972 1.6234 -2.1030 10 14 4.4943 3.4237 -4.0062 11 1 3.7565 4.7103 -3.9342 12 1 5.8093 3.6425 -4.6608 13 1 3.7052 2.4445 -4.7960 14 6 4.2891 3.4778 1.2035 15 6 4.9237 4.7174 1.2123 16 7 5.1432 5.3406 2.3557 17 6 4.7628 4.7915 3.4948 18 6 4.1275 3.5519 3.4947 19 16 3.6211 2.8200 5.0154 20 6 2.8670 1.2577 4.4852 21 6 2.3674 0.4906 5.7111 22 7 3.9041 2.9226 2.3472 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8890 31 1 3.9329 0.9288 0.8909 32 1 5.6745 1.0984 -2.8700 33 1 5.2359 5.1699 0.2828 34 1 4.9446 5.3042 4.4278 35 1 2.0283 1.4661 3.8208 36 1 3.6080 0.6572 3.9575 37 1 3.2058 0.2823 6.3758 38 1 1.6263 1.0913 6.2383 39 1 1.9138 -0.4480 5.3924 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:09 Heat of formation + Delta-G solvation = 31.848937 kcal Electronic energy + Delta-G solvation = -20192.379036 eV Core-core repulsion = 17260.731338 eV Total energy + Delta-G solvation = -2931.647698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.76371 -36.88066 -34.26170 -33.19465 -32.59473 -32.04666 -29.69183 -28.09454 -25.29880 -23.85423 -23.72407 -22.67121 -21.22172 -20.40277 -18.12430 -16.73807 -16.22836 -15.87615 -15.41092 -14.90559 -14.79296 -14.70082 -14.19565 -14.01530 -13.65500 -13.37183 -12.43782 -12.32468 -12.26835 -12.15738 -11.77923 -11.68015 -11.48286 -11.39775 -11.28177 -10.81267 -10.62465 -10.51020 -10.47306 -10.37702 -10.30757 -10.10861 -9.95118 -9.65760 -8.93497 -8.10198 -7.54414 -6.88891 -6.48595 -4.17820 1.86090 1.91979 2.34892 2.64541 3.02657 3.09508 3.14149 3.85280 4.47210 4.56716 4.90621 5.10170 5.10691 5.35782 5.38394 5.45652 5.51133 5.54091 5.71911 5.77941 5.88317 5.91343 5.94974 6.13193 6.15935 6.24497 6.26518 6.32950 6.41654 6.45697 6.55973 6.68896 6.88426 7.12719 7.24020 7.31365 7.81261 8.10609 8.40926 8.83864 9.00412 9.44642 10.33808 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.006504 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.547238 B = 4304.219042 C = 5796.406927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.125 4.125 4 C 0.116 3.884 5 N -0.396 5.396 6 C -0.316 4.316 7 H 0.097 0.903 8 C 0.042 3.958 9 N -0.847 5.847 10 Si 0.922 3.078 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.336 3.664 15 C -0.023 4.023 16 N -0.398 5.398 17 C -0.072 4.072 18 C 0.136 3.864 19 S -0.103 6.103 20 C -0.093 4.093 21 C -0.137 4.137 22 N -0.536 5.536 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.273 0.727 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -3.649 6.274 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.164 4.164 4 C -0.008 4.008 5 N -0.085 5.085 6 C -0.445 4.445 7 H 0.114 0.886 8 C -0.166 4.166 9 N -0.480 5.480 10 Si 0.747 3.253 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.202 1.202 14 C 0.090 3.910 15 C -0.200 4.200 16 N -0.110 5.110 17 C -0.238 4.238 18 C -0.120 4.120 19 S 0.133 5.867 20 C -0.241 4.241 21 C -0.196 4.196 22 N -0.266 5.266 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.080 -3.600 7.014 9.956 hybrid contribution -0.204 -0.286 -2.192 2.220 sum -6.284 -3.886 4.822 8.823 Atomic orbital electron populations 1.21750 0.96517 1.00742 1.01517 1.21417 0.95082 0.97588 1.01546 1.21890 0.97499 0.95534 1.01499 1.21592 0.91609 0.83836 1.03721 1.42485 1.53891 1.11539 1.00553 1.19584 1.43117 0.95900 0.85908 0.88557 1.25436 0.93551 0.96766 1.00840 1.70030 1.31167 1.14623 1.32221 0.85944 0.78543 0.79506 0.81308 1.18800 1.20341 1.20216 1.19614 0.92465 0.92474 0.86487 1.22792 1.05277 0.95305 0.96621 1.67998 1.12918 1.32044 0.98067 1.22239 1.09473 0.95291 0.96815 1.23384 0.97765 0.94895 0.95964 1.85106 1.72793 1.21293 1.07520 1.23256 1.03727 0.95883 1.01282 1.21556 1.01518 0.99839 0.96650 1.68171 1.26819 1.34905 0.96670 0.93116 0.93007 0.93348 0.92268 0.92477 0.92831 0.92292 0.87385 0.92756 0.91632 0.82280 0.83762 0.89391 0.89346 0.91940 0.91983 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.13 -2.37 5.54 -26.73 -0.15 -2.52 16 4 C 0.12 2.56 4.96 -4.04 -0.02 2.54 16 5 N -0.40 -9.47 2.64 -114.96 -0.30 -9.78 16 6 C -0.32 -7.68 8.38 -15.07 -0.13 -7.81 16 7 H 0.10 2.29 7.08 -52.49 -0.37 1.92 16 8 C 0.04 1.00 4.96 -17.45 -0.09 0.91 16 9 N -0.85 -21.07 11.31 55.49 0.63 -20.44 16 10 Si 0.92 18.50 29.61 -169.99 -5.03 13.47 16 11 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 14 C 0.34 7.97 7.30 -154.80 -1.13 6.84 16 15 C -0.02 -0.54 10.41 -17.08 -0.18 -0.72 16 16 N -0.40 -8.86 10.48 -12.64 -0.13 -8.99 16 17 C -0.07 -1.48 10.98 -17.07 -0.19 -1.67 16 18 C 0.14 2.77 7.00 -16.76 -0.12 2.65 16 19 S -0.10 -1.67 21.92 -107.50 -2.36 -4.02 16 20 C -0.09 -1.32 5.94 37.16 0.22 -1.10 16 21 C -0.14 -1.46 9.92 37.16 0.37 -1.09 16 22 N -0.54 -11.85 8.49 -11.09 -0.09 -11.94 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.11 2.56 5.33 -51.93 -0.28 2.28 16 31 H 0.05 1.22 7.54 -51.93 -0.39 0.83 16 32 H 0.27 6.37 8.32 -40.82 -0.34 6.03 16 33 H 0.16 3.60 6.61 -52.49 -0.35 3.25 16 34 H 0.15 2.58 8.06 -52.49 -0.42 2.15 16 35 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 36 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -26.05 337.65 -9.42 -35.46 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.02 Total: 6.71 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.19 Total: -5.56 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.10 Total: -51.15 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.36 Total: -4.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.05 -9.42 -35.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.312 kcal (2) G-P(sol) polarization free energy of solvation -26.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds