Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 C 1.52999 * 109.46877 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99912 * 271.26732 * 5 4 3 7 7 H 1.08005 * 120.00278 * 145.74405 * 6 5 4 8 8 C 1.38846 * 120.00023 * 325.74300 * 6 5 4 9 9 N 1.31539 * 120.00118 * 153.57609 * 8 6 5 10 10 Si 1.86800 * 119.99984 * 333.57563 * 8 6 5 11 11 H 1.48496 * 109.47092 * 95.05834 * 10 8 6 12 12 H 1.48502 * 109.47290 * 215.06085 * 10 8 6 13 13 H 1.48501 * 109.46981 * 335.05624 * 10 8 6 14 14 C 1.38511 * 120.00081 * 91.26213 * 5 4 3 15 15 C 1.39741 * 120.48817 * 4.72338 * 14 5 4 16 16 C 1.38169 * 118.48398 * 179.76002 * 15 14 5 17 17 C 1.50704 * 120.34471 * 180.26375 * 16 15 14 18 18 N 1.32475 * 119.30002 * 0.51351 * 16 15 14 19 19 C 1.32558 * 120.93839 * 359.74827 * 18 16 15 20 20 S 1.76202 * 119.17257 * 179.97438 * 19 18 16 21 21 C 1.80997 * 100.00278 * 359.97438 * 20 19 18 22 22 N 1.32486 * 121.64822 * 359.97438 * 19 18 16 23 23 H 1.08997 * 109.47316 * 300.00753 * 1 2 3 24 24 H 1.09004 * 109.46405 * 60.00262 * 1 2 3 25 25 H 1.08996 * 109.47446 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47316 * 239.99247 * 2 1 3 27 27 H 1.09004 * 109.46405 * 119.99738 * 2 1 3 28 28 H 1.08997 * 109.47641 * 59.99446 * 3 2 1 29 29 H 1.09001 * 109.46869 * 299.99513 * 3 2 1 30 30 H 1.08997 * 109.47326 * 59.99389 * 4 3 2 31 31 H 1.09001 * 109.47084 * 299.99516 * 4 3 2 32 32 H 0.97004 * 119.99689 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.75556 * 0.02562 * 15 14 5 34 34 H 1.09001 * 109.46969 * 270.25545 * 17 16 15 35 35 H 1.08996 * 109.47137 * 30.25836 * 17 16 15 36 36 H 1.09000 * 109.46502 * 150.25460 * 17 16 15 37 37 H 1.09000 * 109.46832 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.47011 * 299.99920 * 21 20 19 39 39 H 1.09000 * 109.46757 * 59.99748 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2625 3.4771 -1.1859 7 1 4.0778 4.5390 -1.2561 8 6 4.7068 2.7748 -2.2981 9 7 4.4241 3.2098 -3.5069 10 14 5.7061 1.2120 -2.0780 11 1 4.8032 0.0346 -2.1375 12 1 6.7182 1.1149 -3.1603 13 1 6.3915 1.2441 -0.7609 14 6 4.3138 3.4685 1.1990 15 6 4.2036 2.7816 2.4109 16 6 4.4727 3.4639 3.5819 17 6 4.3727 2.7625 4.9120 18 7 4.8147 4.7424 3.5233 19 6 4.9062 5.3708 2.3597 20 16 5.3642 7.0721 2.3360 21 6 5.5628 7.3689 4.1103 22 7 4.6619 4.7516 1.2142 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9338 0.9284 -0.8890 31 1 3.9330 0.9288 0.8909 32 1 4.7349 2.7192 -4.2839 33 1 3.9189 1.7401 2.4315 34 1 3.3586 2.8612 5.2994 35 1 4.6120 1.7068 4.7849 36 1 5.0751 3.2124 5.6136 37 1 5.8545 8.4063 4.2747 38 1 4.6196 7.1712 4.6196 39 1 6.3344 6.7079 4.5051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167133236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = 48.353344 kcal Electronic energy + Delta-G solvation = -20146.445779 eV Core-core repulsion = 17215.513766 eV Total energy + Delta-G solvation = -2930.932013 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93303 -37.29478 -34.50243 -33.19197 -32.46606 -30.78047 -28.70505 -28.43171 -27.83041 -24.67801 -24.14789 -22.71050 -20.91736 -20.62742 -17.81028 -17.10705 -16.41543 -15.73737 -15.24533 -14.90822 -14.53697 -14.35965 -13.98679 -13.80400 -13.20669 -13.12387 -13.03470 -12.78541 -12.64826 -12.39572 -12.22456 -12.17717 -11.88255 -11.68631 -11.40346 -10.87937 -10.73908 -10.63227 -10.37385 -10.32131 -10.11998 -9.74776 -9.61118 -9.31938 -8.95207 -8.21666 -7.47812 -7.13804 -6.59517 -3.96289 1.81374 1.88006 2.23231 2.67130 2.94622 3.14349 3.19156 3.93506 4.07031 4.53183 4.86863 4.93957 5.17995 5.24085 5.34139 5.39434 5.45237 5.49148 5.50152 5.78164 5.78812 5.82917 5.91476 5.96830 6.00581 6.03342 6.06350 6.08544 6.15494 6.19579 6.33326 6.49982 6.55446 6.72488 6.98956 7.35662 7.90431 8.14100 8.46298 8.89464 9.15947 9.35629 10.50765 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.006385 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.704044 B = 4384.563703 C = 5491.141534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.102 3.898 5 N -0.422 5.422 6 C -0.305 4.305 7 H 0.117 0.883 8 C 0.063 3.937 9 N -0.844 5.844 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.406 3.594 15 C -0.326 4.326 16 C 0.197 3.803 17 C -0.094 4.094 18 N -0.606 5.606 19 C 0.340 3.660 20 S -0.028 6.028 21 C -0.136 4.136 22 N -0.546 5.546 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.277 0.723 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -3.159 11.755 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.021 4.021 5 N -0.114 5.114 6 C -0.433 4.433 7 H 0.134 0.866 8 C -0.145 4.145 9 N -0.478 5.478 10 Si 0.694 3.306 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.187 1.187 14 C 0.159 3.841 15 C -0.359 4.359 16 C 0.054 3.946 17 C -0.152 4.152 18 N -0.335 5.335 19 C -0.040 4.040 20 S 0.203 5.797 21 C -0.305 4.305 22 N -0.274 5.274 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.943 -1.604 10.324 10.627 hybrid contribution 0.153 -2.687 0.795 2.807 sum -1.790 -4.291 11.119 12.052 Atomic orbital electron populations 1.21738 0.95898 1.01048 1.01924 1.21481 0.95877 0.97016 1.01726 1.21925 0.95217 0.96363 1.03285 1.21896 0.94624 0.83701 1.01914 1.42654 1.55111 1.10802 1.02826 1.19219 1.43883 0.96635 0.83589 0.86590 1.25332 0.96346 0.98112 0.94736 1.69854 1.39755 1.40186 0.97987 0.87127 0.81257 0.82992 0.79225 1.19906 1.20987 1.18732 1.18474 0.90445 0.88708 0.86504 1.21612 1.19610 1.01768 0.92950 1.20908 0.89705 0.89420 0.94531 1.20591 1.02530 0.99124 0.92932 1.68386 1.27388 1.10467 1.27260 1.24083 0.94536 0.98950 0.86462 1.85594 1.84967 1.00804 1.08295 1.23380 1.06363 1.04430 0.96346 1.67953 1.22685 1.09058 1.27750 0.92884 0.92605 0.93121 0.92040 0.92283 0.91997 0.90462 0.90715 0.91335 0.91271 0.85700 0.90838 0.91170 0.91006 0.88738 0.89698 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.87 16 3 C -0.13 -2.26 5.54 -26.73 -0.15 -2.41 16 4 C 0.10 2.05 4.20 -4.04 -0.02 2.03 16 5 N -0.42 -10.14 2.31 -114.85 -0.27 -10.41 16 6 C -0.30 -8.32 9.45 -15.05 -0.14 -8.46 16 7 H 0.12 3.55 7.79 -52.48 -0.41 3.14 16 8 C 0.06 1.68 5.26 -17.45 -0.09 1.59 16 9 N -0.84 -23.47 13.96 55.49 0.77 -22.69 16 10 Si 0.87 20.07 25.21 -169.99 -4.28 15.78 16 11 H -0.27 -5.81 6.60 56.52 0.37 -5.44 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 14 C 0.41 9.61 7.34 -154.79 -1.14 8.48 16 15 C -0.33 -6.53 9.00 -39.05 -0.35 -6.88 16 16 C 0.20 3.64 6.81 -82.34 -0.56 3.08 16 17 C -0.09 -1.24 10.21 36.01 0.37 -0.87 16 18 N -0.61 -12.06 9.06 -9.75 -0.09 -12.15 16 19 C 0.34 7.41 7.85 -90.90 -0.71 6.70 16 20 S -0.03 -0.51 22.89 -107.50 -2.46 -2.97 16 21 C -0.14 -1.79 9.62 101.05 0.97 -0.81 16 22 N -0.55 -13.53 9.46 -12.65 -0.12 -13.65 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.58 3.09 -51.93 -0.16 1.42 16 31 H 0.07 1.22 5.99 -51.93 -0.31 0.91 16 32 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.13 2.17 6.13 -52.49 -0.32 1.85 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.08 1.13 8.11 -51.91 -0.42 0.71 16 39 H 0.08 1.13 8.11 -51.92 -0.42 0.71 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -30.08 331.87 -8.91 -38.99 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.85 Total: 2.98 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.61 Total: -0.88 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.28 Total: 15.78 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.46 Total: -2.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.08 -8.91 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167133236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.343 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds