Wall clock time and date at job start Tue Mar 31 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48504 * 109.46711 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47339 * 119.99937 * 3 2 1 7 7 C 1.37875 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47066 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47292 * 299.99818 * 11 10 9 13 13 N 1.46893 * 109.47548 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00631 * 155.00242 * 13 12 11 15 15 C 1.53000 * 109.47602 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47198 * 179.97438 * 15 14 13 17 17 N 1.29413 * 125.70005 * 89.95743 * 16 15 14 18 18 N 1.26395 * 116.47579 * 179.74885 * 17 16 15 19 19 C 1.29414 * 116.47820 * 0.53804 * 18 17 16 20 20 S 1.71222 * 125.69327 * 270.00025 * 16 15 14 21 21 C 1.52996 * 109.47211 * 59.99623 * 12 11 10 22 22 C 1.52997 * 109.46994 * 299.99910 * 9 7 2 23 23 H 0.97002 * 120.00589 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46950 * 59.99760 * 9 7 2 25 25 H 1.08999 * 109.47474 * 60.00004 * 10 9 7 26 26 H 1.09000 * 109.47079 * 299.99604 * 10 9 7 27 27 H 1.09009 * 109.47390 * 179.97438 * 11 10 9 28 28 H 1.09002 * 109.47475 * 60.00281 * 11 10 9 29 29 H 1.09005 * 109.46809 * 300.00348 * 12 11 10 30 30 H 1.00896 * 111.00182 * 31.04311 * 13 12 11 31 31 H 1.09005 * 109.47403 * 59.99170 * 14 13 12 32 32 H 1.09004 * 109.46814 * 299.99707 * 14 13 12 33 33 H 1.09000 * 109.46801 * 59.99448 * 15 14 13 34 34 H 1.08999 * 109.46538 * 299.99666 * 15 14 13 35 35 H 1.08002 * 125.70149 * 179.77314 * 19 18 17 36 36 H 1.09005 * 109.46643 * 60.00623 * 21 12 11 37 37 H 1.09000 * 109.47177 * 180.02562 * 21 12 11 38 38 H 1.08999 * 109.47150 * 299.99728 * 22 9 7 39 39 H 1.09003 * 109.47514 * 60.00173 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4802 -4.9870 0.0012 12 6 0.5992 -5.0679 1.2494 13 7 -0.1348 -6.3403 1.2492 14 6 -0.5030 -6.7361 2.6151 15 6 -1.2647 -8.0624 2.5741 16 6 -1.6419 -8.4686 3.9754 17 7 -2.7371 -8.1481 4.5857 18 7 -2.8768 -8.5895 5.7618 19 6 -1.9044 -9.3042 6.2291 20 16 -0.6923 -9.4307 5.0264 21 6 -0.3950 -3.9050 1.2483 22 6 0.3709 -2.5799 1.2494 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 2.8712 -3.6039 0.8922 26 1 2.8725 -3.6047 -0.8877 27 1 2.1885 -5.8156 0.0016 28 1 0.8545 -5.0450 -0.8895 29 1 1.2250 -5.0100 2.1401 30 1 0.3989 -7.0656 0.7940 31 1 -1.1363 -5.9673 3.0580 32 1 0.3994 -6.8534 3.2151 33 1 -0.6318 -8.8313 2.1311 34 1 -2.1672 -7.9446 1.9742 35 1 -1.8658 -9.7503 7.2119 36 1 -1.0207 -3.9629 0.3576 37 1 -1.0223 -3.9624 2.1378 38 1 0.9972 -2.5220 2.1396 39 1 -0.3375 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:32 Heat of formation + Delta-G solvation = 41.290905 kcal Electronic energy + Delta-G solvation = -19313.797777 eV Core-core repulsion = 16382.559514 eV Total energy + Delta-G solvation = -2931.238263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.54493 -38.31527 -35.78594 -33.44151 -32.03481 -30.06177 -29.71678 -28.07384 -26.06355 -24.19109 -22.77613 -21.54094 -20.80424 -20.37956 -19.41234 -18.67442 -16.44389 -16.28397 -16.00292 -15.63234 -14.72800 -14.70105 -14.31670 -13.90463 -13.48243 -13.32279 -12.98135 -12.75281 -12.50403 -12.01256 -11.70295 -11.38844 -11.22010 -10.96435 -10.78396 -10.67631 -10.54992 -10.46041 -10.42421 -10.18127 -10.14249 -9.95662 -9.81222 -9.30853 -8.89138 -8.64946 -8.25940 -8.22647 -5.93061 -3.99552 0.12417 0.60882 1.03834 2.28797 3.34066 3.39133 3.41248 3.66305 4.22227 4.46922 4.51046 4.67541 4.85663 4.99702 5.13398 5.34963 5.37277 5.40253 5.53365 5.76798 5.84651 5.88958 6.14169 6.32338 6.43154 6.43916 6.61233 6.72730 6.76593 6.95248 7.16040 7.24135 7.37970 7.53538 7.59398 7.80383 8.07746 8.22161 8.25319 8.52216 9.04536 9.64815 11.12322 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033424 B = 0.002942 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.513203 B = 9513.696043 C = 9870.152978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.093 3.907 13 N -0.685 5.685 14 C 0.067 3.933 15 C -0.041 4.041 16 C 0.002 3.998 17 N -0.260 5.260 18 N -0.257 5.257 19 C -0.052 4.052 20 S 0.163 5.837 21 C -0.102 4.102 22 C -0.110 4.110 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.335 0.665 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -20.807 8.578 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.016 4.016 13 N -0.316 5.316 14 C -0.064 4.064 15 C -0.082 4.082 16 C -0.277 4.277 17 N -0.097 5.097 18 N -0.093 5.093 19 C -0.351 4.351 20 S 0.405 5.595 21 C -0.141 4.141 22 C -0.148 4.148 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.973 -20.237 8.522 21.980 hybrid contribution 1.258 0.583 0.662 1.536 sum 0.284 -19.654 9.183 21.696 Atomic orbital electron populations 1.69865 1.05811 1.26383 1.50767 1.24965 0.94826 0.98934 0.95264 0.86725 0.79649 0.83484 0.78509 1.20370 1.21347 1.20405 1.21200 0.92778 0.90871 1.50437 0.92960 1.18644 0.92557 0.91323 0.94390 1.21597 0.98609 0.94164 1.00042 1.21720 0.97625 0.98429 0.97540 1.21626 0.93950 0.88640 0.97368 1.60532 1.49129 1.05766 1.16156 1.21923 0.98058 0.95226 0.91220 1.20253 1.03185 0.98145 0.86666 1.29387 0.94094 1.00147 1.04117 1.71478 1.17950 1.19101 1.01208 1.71453 1.23981 1.09087 1.04757 1.30462 0.93954 1.03838 1.06843 1.83799 1.22992 1.46335 1.06393 1.21621 0.97160 0.94729 1.00540 1.21638 0.99581 0.95088 0.98519 0.93027 0.95599 0.93621 0.93315 0.93953 0.91657 0.94487 0.84774 0.90018 0.95280 0.89272 0.87123 0.77026 0.92151 0.94289 0.95184 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 11.32 55.43 0.63 -24.94 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.13 8.56 -34.44 -0.29 -14.42 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.21 2.10 -91.78 -0.19 1.02 16 10 C -0.11 -2.15 5.14 -26.73 -0.14 -2.29 16 11 C -0.12 -1.92 5.19 -26.73 -0.14 -2.06 16 12 C 0.09 1.52 2.49 -67.72 -0.17 1.35 16 13 N -0.69 -9.03 6.31 -106.73 -0.67 -9.71 16 14 C 0.07 0.79 5.47 -3.82 -0.02 0.77 16 15 C -0.04 -0.38 6.08 -27.88 -0.17 -0.55 16 16 C 0.00 0.02 6.78 -13.30 -0.09 -0.07 16 17 N -0.26 -3.49 11.66 32.58 0.38 -3.11 16 18 N -0.26 -3.21 11.66 29.45 0.34 -2.87 16 19 C -0.05 -0.43 12.39 51.74 0.64 0.21 16 20 S 0.16 1.20 23.06 -107.50 -2.48 -1.28 16 21 C -0.10 -2.01 5.43 -26.71 -0.14 -2.15 16 22 C -0.11 -2.58 4.98 -26.71 -0.13 -2.72 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.60 8.12 -51.92 -0.42 0.17 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 30 H 0.33 3.68 8.35 -39.29 -0.33 3.36 16 31 H 0.08 1.14 7.44 -51.93 -0.39 0.76 16 32 H 0.03 0.32 8.06 -51.93 -0.42 -0.09 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -30.79 327.31 -8.84 -39.64 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.01 Total: 0.28 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.94 Total: -19.30 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.68 Total: -40.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.48 Total: -1.28 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.79 -8.84 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.926 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds