Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 H 1.09000 * 109.46843 * 304.28901 * 3 2 1 5 5 C 1.50702 * 109.47050 * 184.29871 * 3 2 1 6 6 H 1.07998 * 119.99635 * 270.52575 * 5 3 2 7 7 C 1.37871 * 120.00230 * 90.52378 * 5 3 2 8 8 N 1.31521 * 119.99787 * 182.53276 * 7 5 3 9 9 Si 1.86797 * 120.00229 * 2.81235 * 7 5 3 10 10 H 1.48492 * 109.47357 * 88.63776 * 9 7 5 11 11 H 1.48497 * 109.47169 * 208.64213 * 9 7 5 12 12 H 1.48502 * 109.46794 * 328.63718 * 9 7 5 13 13 N 1.46891 * 109.47582 * 64.29332 * 3 2 1 14 14 C 1.46900 * 111.00202 * 256.89427 * 13 3 2 15 15 C 1.54332 * 110.82524 * 271.13707 * 14 13 3 16 16 C 1.51692 * 105.02132 * 215.55092 * 15 14 13 17 17 C 1.38512 * 130.25050 * 197.10866 * 16 15 14 18 18 C 1.38256 * 120.22561 * 179.83355 * 17 16 15 19 19 F 1.35093 * 120.06826 * 179.97438 * 18 17 16 20 20 C 1.38688 * 119.85851 * 359.97438 * 18 17 16 21 21 F 1.35103 * 120.06574 * 179.97438 * 20 18 17 22 22 C 1.38256 * 119.86331 * 359.97438 * 20 18 17 23 23 C 1.38223 * 109.83467 * 16.93399 * 16 15 14 24 24 C 1.51385 * 109.75482 * 0.15028 * 23 16 15 25 25 H 1.09007 * 109.46679 * 56.95036 * 1 2 3 26 26 H 1.09000 * 109.47519 * 176.94963 * 1 2 3 27 27 H 1.08998 * 109.47365 * 296.95901 * 1 2 3 28 28 H 1.08990 * 109.47610 * 239.99282 * 2 1 3 29 29 H 1.09005 * 109.46741 * 119.99335 * 2 1 3 30 30 H 0.97000 * 119.99538 * 180.02562 * 8 7 5 31 31 H 1.00908 * 111.00090 * 20.84994 * 13 3 2 32 32 H 1.09007 * 110.72645 * 34.54288 * 14 13 3 33 33 H 1.09004 * 110.30549 * 334.33342 * 15 14 13 34 34 H 1.09005 * 110.30460 * 96.48475 * 15 14 13 35 35 H 1.07990 * 119.88768 * 359.81555 * 17 16 15 36 36 H 1.07998 * 119.88467 * 180.02562 * 22 20 18 37 37 H 1.09000 * 110.30291 * 223.89251 * 24 23 16 38 38 H 1.08997 * 110.30696 * 101.73679 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6152 1.9780 -0.8491 5 6 3.5433 1.4438 -0.1065 6 1 4.1479 1.4123 0.7878 7 6 4.1466 1.4852 -1.3455 8 7 5.4574 1.4360 -1.4406 9 14 3.1026 1.6189 -2.8888 10 1 2.8623 3.0505 -3.2014 11 1 3.8127 0.9767 -4.0239 12 1 1.8028 0.9355 -2.6678 13 7 1.6369 2.1045 1.2478 14 6 0.4979 3.0043 1.0222 15 6 0.9831 4.4160 0.6301 16 6 -0.0108 5.3656 1.2715 17 6 -0.2664 6.7022 1.0131 18 6 -1.2362 7.3768 1.7314 19 9 -1.4825 8.6806 1.4771 20 6 -1.9555 6.7123 2.7134 21 9 -2.9038 7.3677 3.4182 22 6 -1.7002 5.3779 2.9697 23 6 -0.7277 4.7034 2.2503 24 6 -0.2647 3.2648 2.3387 25 1 -0.3633 0.5605 -0.8615 26 1 -0.3634 -1.0262 -0.0547 27 1 -0.3634 0.4659 0.9160 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 5.8819 1.4655 -2.3123 31 1 1.4258 1.4267 1.9649 32 1 -0.1694 2.5988 0.2617 33 1 1.9838 4.5948 1.0236 34 1 0.9759 4.5309 -0.4538 35 1 0.2939 7.2191 0.2483 36 1 -2.2605 4.8600 3.7341 37 1 -1.1216 2.5958 2.4181 38 1 0.3994 3.1330 3.1929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173476867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -71.703572 kcal Electronic energy + Delta-G solvation = -21766.128237 eV Core-core repulsion = 18243.857028 eV Total energy + Delta-G solvation = -3522.271209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.53198 -48.61370 -40.15435 -37.12873 -34.53940 -32.14507 -31.59043 -30.64717 -28.12518 -27.23196 -26.26285 -23.07903 -22.46459 -21.46515 -20.30985 -19.83412 -17.71917 -17.29818 -16.82348 -16.69587 -16.40433 -15.66884 -15.03841 -14.73541 -14.59307 -14.39840 -14.13557 -13.87835 -13.75642 -12.87521 -12.77732 -12.66601 -12.51480 -12.31363 -12.04590 -11.79080 -11.72979 -11.11366 -11.05144 -10.95917 -10.81025 -10.56856 -10.41299 -9.97197 -9.74928 -9.23617 -9.08995 -8.56092 -8.45533 -7.48327 -6.07820 -4.04737 0.83240 0.90523 3.22958 3.24612 3.31624 3.33400 3.63898 4.10837 4.22540 4.38028 4.49409 4.86222 4.95486 4.96639 5.04866 5.21006 5.40187 5.53203 5.63284 5.67626 5.72733 5.77155 5.83083 5.85533 5.91989 5.95016 6.04401 6.18338 6.36029 6.39213 6.44588 6.48858 6.67792 6.69328 6.81679 7.08334 7.69899 7.86039 8.25311 8.64888 9.03880 9.55188 11.05853 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.004332 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.654501 B = 6461.923802 C = 7095.538116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.146 4.146 3 C 0.187 3.813 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.078 0.922 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.867 3.133 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.663 5.663 14 C 0.087 3.913 15 C -0.076 4.076 16 C -0.062 4.062 17 C -0.118 4.118 18 C 0.065 3.935 19 F -0.132 7.132 20 C 0.058 3.942 21 F -0.133 7.133 22 C -0.116 4.116 23 C -0.073 4.073 24 C -0.084 4.084 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.263 0.737 31 H 0.329 0.671 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 5.992 6.311 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C 0.079 3.921 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.096 0.904 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.695 3.305 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.293 5.293 14 C -0.024 4.024 15 C -0.113 4.113 16 C -0.062 4.062 17 C -0.137 4.137 18 C 0.045 3.955 19 F -0.110 7.110 20 C 0.038 3.962 21 F -0.111 7.111 22 C -0.134 4.134 23 C -0.074 4.074 24 C -0.121 4.121 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.094 0.906 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.075 6.559 6.132 16.695 hybrid contribution -1.459 -0.064 -1.018 1.780 sum -15.534 6.495 5.113 17.597 Atomic orbital electron populations 1.21964 0.98591 1.00333 1.00489 1.22456 0.92541 1.01626 1.01976 1.19729 0.96700 0.88416 0.87281 0.95098 1.20921 0.88734 1.49062 0.94068 0.90374 1.24961 0.94655 0.95000 0.98527 1.69890 1.08575 1.51031 1.24383 0.87036 0.81103 0.78647 0.83758 1.20331 1.21489 1.18944 1.60902 1.33536 1.23838 1.11056 1.22233 0.91614 0.93919 0.94634 1.21311 0.98176 0.91507 1.00338 1.20806 0.96607 0.92766 0.96053 1.20523 0.97777 0.94404 1.00996 1.17439 0.99781 0.79373 0.98940 1.91510 1.93549 1.32602 1.93374 1.17394 0.92116 0.91493 0.95187 1.91507 1.61763 1.80869 1.77000 1.20421 0.99634 0.91656 1.01728 1.20477 0.94488 0.97242 0.95145 1.21326 0.99936 0.90761 1.00091 0.93693 0.93869 0.93639 0.92166 0.92368 0.92719 0.85226 0.92902 0.87440 0.90594 0.83794 0.84036 0.90585 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.75 37.16 0.32 -2.07 16 2 C -0.15 -2.77 4.96 -26.73 -0.13 -2.90 16 3 C 0.19 3.93 1.66 -68.87 -0.11 3.82 16 4 H 0.03 0.68 4.96 -51.93 -0.26 0.42 16 5 C -0.49 -12.86 9.19 -34.44 -0.32 -13.18 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.87 20.46 26.48 -169.99 -4.50 15.96 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.26 -5.89 6.34 56.52 0.36 -5.53 16 13 N -0.66 -11.67 5.85 -99.48 -0.58 -12.25 16 14 C 0.09 1.28 2.35 -66.31 -0.16 1.12 16 15 C -0.08 -1.13 6.50 -26.70 -0.17 -1.30 16 16 C -0.06 -0.81 6.14 -104.04 -0.64 -1.45 16 17 C -0.12 -1.47 10.02 -39.47 -0.40 -1.87 16 18 C 0.06 0.84 7.31 -39.41 -0.29 0.55 16 19 F -0.13 -1.78 17.19 2.25 0.04 -1.74 16 20 C 0.06 0.73 7.31 -39.41 -0.29 0.44 16 21 F -0.13 -1.73 17.19 2.25 0.04 -1.69 16 22 C -0.12 -1.30 10.02 -39.48 -0.40 -1.69 16 23 C -0.07 -0.88 6.14 -104.19 -0.64 -1.52 16 24 C -0.08 -0.98 6.23 -26.84 -0.17 -1.15 16 25 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.61 6.81 -51.93 -0.35 0.26 16 28 H 0.06 1.24 7.32 -51.93 -0.38 0.86 16 29 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.33 5.23 7.57 -39.29 -0.30 4.93 16 32 H 0.05 0.80 6.60 -51.92 -0.34 0.45 16 33 H 0.11 1.77 8.08 -51.93 -0.42 1.35 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -28.37 315.69 -7.98 -36.34 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.02 Total: 3.88 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.48 Total: -19.37 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.19 Total: -38.14 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.50 Total: 15.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.37 -7.98 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173476867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.360 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds