Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.53003 * 109.46899 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46844 * 179.97438 * 4 3 2 6 6 C 1.36851 * 119.99768 * 96.01452 * 5 4 3 7 7 H 1.08004 * 119.99725 * 222.34942 * 6 5 4 8 8 C 1.39022 * 120.00267 * 42.62755 * 6 5 4 9 9 N 1.31383 * 120.00297 * 210.37972 * 8 6 5 10 10 Si 1.86808 * 119.99941 * 30.38267 * 8 6 5 11 11 H 1.48498 * 109.47039 * 85.98719 * 10 8 6 12 12 H 1.48496 * 109.47216 * 205.98642 * 10 8 6 13 13 H 1.48498 * 109.47003 * 325.98894 * 10 8 6 14 14 C 1.34772 * 120.00000 * 276.00743 * 5 4 3 15 15 O 1.21741 * 120.00360 * 355.22103 * 14 5 4 16 16 C 1.46520 * 119.99939 * 175.21762 * 14 5 4 17 17 C 1.36667 * 125.99448 * 183.90222 * 16 14 5 18 18 C 1.40323 * 106.70261 * 180.02562 * 17 16 14 19 19 C 1.35169 * 107.12941 * 359.97438 * 18 17 16 20 20 C 1.50693 * 125.61189 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47163 * 90.00438 * 20 19 18 22 22 C 1.42894 * 114.00252 * 179.97438 * 21 20 19 23 23 O 1.33961 * 108.77330 * 359.73785 * 19 18 17 24 24 H 1.09004 * 109.46729 * 59.99908 * 1 2 3 25 25 H 1.08995 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47196 * 300.00369 * 1 2 3 27 27 H 1.08997 * 109.46676 * 239.99587 * 2 1 3 28 28 H 1.09004 * 109.46729 * 120.00092 * 2 1 3 29 29 H 1.09000 * 109.46944 * 60.00054 * 3 2 1 30 30 H 1.08995 * 109.47156 * 299.99757 * 3 2 1 31 31 H 1.08998 * 109.47114 * 59.99850 * 4 3 2 32 32 H 1.08995 * 109.47238 * 299.99976 * 4 3 2 33 33 H 0.96999 * 120.00410 * 179.97438 * 9 8 6 34 34 H 1.07998 * 126.65160 * 0.02562 * 17 16 14 35 35 H 1.08007 * 126.43752 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47375 * 210.00322 * 20 19 18 37 37 H 1.09005 * 109.47524 * 330.00367 * 20 19 18 38 38 H 1.09004 * 109.47167 * 60.00056 * 22 21 20 39 39 H 1.09004 * 109.47601 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47531 * 300.00428 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.4031 3.4280 1.1785 7 1 4.1138 4.4517 1.3651 8 6 5.1305 2.7262 2.1329 9 7 4.9728 2.9967 3.4089 10 14 6.3322 1.3985 1.6012 11 1 7.6465 2.0161 1.2906 12 1 6.4962 0.4111 2.6982 13 1 5.8093 0.7129 0.3922 14 6 4.1683 3.4990 -1.1611 15 8 3.9455 2.9351 -2.2168 16 6 4.5561 4.9119 -1.1529 17 6 4.6315 5.7304 -2.2447 18 6 5.0400 6.9890 -1.7777 19 6 5.1937 6.8862 -0.4387 20 6 5.6243 7.9979 0.4831 21 8 4.4722 8.7030 0.9495 22 6 4.7713 9.7831 1.8360 23 8 4.8953 5.6348 -0.0654 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.4801 2.5068 4.0749 34 1 4.4182 5.4609 -3.2685 35 1 5.2006 7.8740 -2.3757 36 1 6.1618 7.5775 1.3330 37 1 6.2770 8.6846 -0.0559 38 1 5.4065 10.5070 1.3254 39 1 3.8447 10.2673 2.1444 40 1 5.2909 9.3994 2.7140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189262595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -63.178892 kcal Electronic energy + Delta-G solvation = -22553.283114 eV Core-core repulsion = 19142.469078 eV Total energy + Delta-G solvation = -3410.814036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93488 -38.69864 -37.66096 -35.58136 -34.10182 -32.44482 -31.97391 -30.74075 -28.80470 -26.97260 -25.48122 -24.78499 -23.41024 -21.17652 -20.77301 -20.61205 -19.18667 -18.01623 -16.55806 -16.07140 -15.95435 -15.59498 -15.35694 -15.05763 -14.80675 -14.36820 -13.91012 -13.59239 -13.09776 -13.05091 -12.65801 -12.55019 -12.41220 -12.26623 -12.19156 -11.88495 -11.61751 -11.38483 -11.30260 -11.05375 -10.72568 -10.64217 -10.34495 -10.01159 -9.83759 -9.67613 -9.37286 -9.34292 -8.83322 -8.02732 -7.72439 -6.62203 -4.12163 1.78173 2.79454 3.09084 3.19313 3.27038 3.36659 4.07357 4.11693 4.15160 4.35376 4.86441 5.04605 5.31378 5.32385 5.36722 5.38632 5.40715 5.48544 5.52998 5.54739 5.66764 5.79150 5.88596 6.13376 6.18749 6.22627 6.25475 6.28946 6.39770 6.43075 6.52107 6.54803 6.81529 6.92399 6.97722 7.14936 7.28164 7.69984 7.96370 8.31459 8.86656 9.23253 9.54639 10.47359 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.005782 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.653204 B = 4841.366247 C = 5467.516438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.115 3.885 5 N -0.439 5.439 6 C -0.353 4.353 7 H 0.116 0.884 8 C 0.083 3.917 9 N -0.833 5.833 10 Si 0.852 3.148 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.539 3.461 15 O -0.582 6.582 16 C -0.005 4.005 17 C -0.173 4.173 18 C -0.196 4.196 19 C -0.028 4.028 20 C 0.145 3.855 21 O -0.384 6.384 22 C 0.032 3.968 23 O -0.112 6.112 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.277 0.723 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 5.490 -2.776 6.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.156 5.156 6 C -0.480 4.480 7 H 0.133 0.867 8 C -0.128 4.128 9 N -0.466 5.466 10 Si 0.676 3.324 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.177 1.177 14 C 0.329 3.671 15 O -0.469 6.469 16 C -0.059 4.059 17 C -0.194 4.194 18 C -0.216 4.216 19 C -0.081 4.081 20 C 0.069 3.931 21 O -0.303 6.303 22 C -0.064 4.064 23 O -0.005 6.005 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.546 4.971 -2.757 5.711 hybrid contribution 1.050 -0.327 -0.008 1.100 sum 0.504 4.644 -2.765 5.429 Atomic orbital electron populations 1.21743 0.96195 1.00868 1.01772 1.21457 0.95550 0.97286 1.01642 1.21898 0.96031 0.96201 1.02627 1.21719 0.93564 0.84059 1.01453 1.43664 1.54151 1.11959 1.05874 1.19226 1.36320 1.00885 0.91534 0.86678 1.25360 0.96107 0.96952 0.94345 1.69890 1.36170 1.40312 1.00237 0.87356 0.83203 0.82003 0.79876 1.19886 1.20603 1.17673 1.17003 0.82272 0.83539 0.84268 1.90720 1.57348 1.67754 1.31068 1.22337 1.05491 0.93554 0.84531 1.21722 1.05715 0.92468 0.99475 1.21385 1.07446 0.98837 0.93917 1.22177 1.06297 0.85735 0.93941 1.20615 0.87547 0.89122 0.95783 1.88005 1.31032 1.46458 1.64783 1.22750 1.01936 0.88954 0.92804 1.84640 1.63298 1.18713 1.33891 0.92924 0.93272 0.92773 0.92270 0.92163 0.91202 0.91986 0.91510 0.91009 0.91292 0.83118 0.83745 0.91173 0.90535 0.94152 0.89517 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.51 5.49 -26.73 -0.15 -2.65 16 4 C 0.11 2.55 3.53 -4.04 -0.01 2.53 16 5 N -0.44 -10.93 2.05 -116.36 -0.24 -11.16 16 6 C -0.35 -9.38 8.31 -15.02 -0.12 -9.50 16 7 H 0.12 3.30 6.05 -52.48 -0.32 2.99 16 8 C 0.08 2.17 5.02 -17.45 -0.09 2.08 16 9 N -0.83 -22.50 13.96 55.50 0.77 -21.72 16 10 Si 0.85 19.84 26.62 -169.99 -4.53 15.32 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.25 -5.77 5.66 56.52 0.32 -5.45 16 14 C 0.54 13.46 7.55 -12.93 -0.10 13.36 16 15 O -0.58 -15.04 16.52 5.15 0.09 -14.95 16 16 C 0.00 -0.12 6.83 -36.81 -0.25 -0.37 16 17 C -0.17 -3.43 10.63 -39.37 -0.42 -3.85 16 18 C -0.20 -3.42 10.77 -39.89 -0.43 -3.85 16 19 C -0.03 -0.54 6.94 -35.40 -0.25 -0.78 16 20 C 0.15 2.19 6.46 36.00 0.23 2.42 16 21 O -0.38 -6.09 10.69 -35.23 -0.38 -6.46 16 22 C 0.03 0.35 11.01 101.05 1.11 1.46 16 23 O -0.11 -2.59 7.50 4.91 0.04 -2.55 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 32 H 0.07 1.59 5.01 -51.93 -0.26 1.33 16 33 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 35 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -30.40 336.29 -5.54 -35.94 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.10 Total: 3.36 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.26 Total: -2.84 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.54 Total: -32.89 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.25 Total: -23.97 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.53 Total: 15.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.40 -5.54 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189262595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.236 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds