Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 N 1.46905 * 109.46923 * 181.11487 * 3 2 1 5 5 C 1.46898 * 110.99856 * 299.44700 * 4 3 2 6 6 C 1.50705 * 109.47064 * 294.06800 * 5 4 3 7 7 H 1.07999 * 119.99744 * 355.08686 * 6 5 4 8 8 C 1.37881 * 120.00030 * 175.09660 * 6 5 4 9 9 N 1.31521 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47082 * 89.99473 * 10 8 6 12 12 H 1.48498 * 109.47003 * 210.00062 * 10 8 6 13 13 H 1.48503 * 109.47014 * 329.99750 * 10 8 6 14 14 C 1.46899 * 111.00376 * 63.40166 * 4 3 2 15 15 C 1.50708 * 109.46783 * 66.04606 * 14 4 3 16 16 C 1.38230 * 119.90761 * 90.00462 * 15 14 4 17 17 C 1.38670 * 120.08436 * 179.97438 * 16 15 14 18 18 O 1.35992 * 120.04238 * 180.02562 * 17 16 15 19 19 C 1.38984 * 119.90956 * 359.97438 * 17 16 15 20 20 O 1.36097 * 120.08495 * 180.02562 * 19 17 16 21 21 C 1.38975 * 119.82198 * 359.97438 * 19 17 16 22 22 O 1.35997 * 120.04238 * 180.02562 * 21 19 17 23 23 C 1.38226 * 119.90660 * 269.97682 * 15 14 4 24 24 H 1.09000 * 109.46464 * 60.00726 * 1 2 3 25 25 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46946 * 300.00450 * 1 2 3 27 27 H 1.08997 * 109.47414 * 239.99346 * 2 1 3 28 28 H 1.09009 * 109.46951 * 119.99615 * 2 1 3 29 29 H 1.08993 * 109.47628 * 61.11274 * 3 2 1 30 30 H 1.08998 * 109.46689 * 301.10563 * 3 2 1 31 31 H 1.09001 * 109.47211 * 54.06258 * 5 4 3 32 32 H 1.09001 * 109.47222 * 174.06423 * 5 4 3 33 33 H 0.96999 * 119.99709 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46967 * 306.05054 * 14 4 3 35 35 H 1.08997 * 109.47061 * 186.04308 * 14 4 3 36 36 H 1.07996 * 119.95873 * 359.71732 * 16 15 14 37 37 H 0.96697 * 114.00550 * 90.00055 * 18 17 16 38 38 H 0.96705 * 113.99278 * 269.99607 * 20 19 17 39 39 H 0.96695 * 114.00136 * 270.02431 * 22 21 19 40 40 H 1.08000 * 119.96149 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4425 -0.0269 5 6 4.0570 0.7606 1.1530 6 6 3.7187 1.5497 2.3916 7 1 3.2228 2.5052 2.3044 8 6 4.0424 1.0519 3.6360 9 7 4.6459 -0.1118 3.7421 10 14 3.6237 2.0303 5.1712 11 1 2.2687 1.6507 5.6459 12 1 4.6203 1.7370 6.2323 13 1 3.6491 3.4813 4.8558 14 6 4.0127 0.8365 -1.2666 15 6 3.6326 1.7027 -2.4398 16 6 4.4834 2.7087 -2.8581 17 6 4.1375 3.5076 -3.9375 18 8 4.9754 4.4967 -4.3486 19 6 2.9339 3.2953 -4.5992 20 8 2.5911 4.0769 -5.6593 21 6 2.0819 2.2822 -4.1761 22 8 0.9033 2.0702 -4.8207 23 6 2.4344 1.4887 -3.0949 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6931 1.9506 0.8997 30 1 1.6606 1.9619 -0.8799 31 1 3.6255 -0.2375 1.2291 32 1 5.1399 0.6819 1.0568 33 1 4.8733 -0.4621 4.6176 34 1 3.5760 -0.1546 -1.3901 35 1 5.0981 0.7514 -1.2144 36 1 5.4167 2.8754 -2.3410 37 1 5.6177 4.2165 -5.0148 38 1 2.0913 4.8691 -5.4185 39 1 0.1615 2.5749 -4.4601 40 1 1.7724 0.7017 -2.7651 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233012022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = -103.645437 kcal Electronic energy + Delta-G solvation = -22455.799228 eV Core-core repulsion = 19043.230432 eV Total energy + Delta-G solvation = -3412.568797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.50194 -38.05114 -37.82500 -36.60027 -35.57205 -32.84432 -32.11176 -29.94863 -29.37438 -27.00838 -26.07171 -23.91442 -22.74135 -22.15784 -21.60450 -19.51642 -18.73966 -17.94255 -17.51672 -16.66037 -16.23895 -15.74095 -15.07781 -15.01985 -14.72550 -14.51328 -14.25115 -13.79179 -13.67092 -13.30191 -12.73971 -12.47261 -12.16294 -11.97598 -11.73684 -11.47315 -11.27501 -11.23683 -11.01740 -10.85617 -10.83226 -10.67418 -10.44322 -10.12584 -9.97704 -9.76969 -9.24756 -8.60602 -8.49056 -8.41132 -7.22106 -6.05322 -4.06285 1.08328 1.13852 3.29641 3.35881 3.36905 3.41302 3.81327 4.07944 4.38230 4.41619 4.93765 5.10234 5.12131 5.30610 5.36215 5.45889 5.48720 5.57840 5.65692 5.80256 5.92507 6.01174 6.07989 6.13376 6.22617 6.27467 6.36761 6.45162 6.58438 6.63647 6.71657 6.91205 7.25075 7.26552 7.37753 7.49982 7.75805 7.77374 8.04104 8.14094 8.50106 9.01589 9.58012 11.05257 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.004474 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.886450 B = 6256.976808 C = 6981.426062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C 0.064 3.936 4 N -0.528 5.528 5 C 0.188 3.812 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.083 3.917 15 C -0.033 4.033 16 C -0.118 4.118 17 C 0.094 3.906 18 O -0.491 6.491 19 C 0.042 3.958 20 O -0.485 6.485 21 C 0.091 3.909 22 O -0.488 6.488 23 C -0.132 4.132 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.005 0.995 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.390 0.610 38 H 0.384 0.616 39 H 0.386 0.614 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 4.281 -15.098 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.045 4.045 15 C -0.034 4.034 16 C -0.137 4.137 17 C 0.048 3.952 18 O -0.301 6.301 19 C -0.004 4.004 20 O -0.294 6.294 21 C 0.046 3.954 22 O -0.298 6.298 23 C -0.151 4.151 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.156 0.844 37 H 0.246 0.754 38 H 0.239 0.761 39 H 0.241 0.759 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.558 4.185 -15.211 16.422 hybrid contribution -0.756 0.025 1.097 1.332 sum -5.313 4.210 -14.115 15.658 Atomic orbital electron populations 1.21653 0.96461 1.00768 1.01170 1.22193 0.95569 1.00372 1.02244 1.22094 0.88366 0.94474 1.01513 1.62409 1.06677 1.54702 1.01336 1.19821 0.94906 0.93017 0.85884 1.21120 1.38220 1.05049 0.89913 0.91942 1.24963 0.95367 0.95062 0.99090 1.69954 1.41497 1.18296 1.24093 0.86537 0.77996 0.80482 0.82657 1.20776 1.21287 1.19790 1.21116 1.00703 0.94066 0.88621 1.19769 0.92742 0.95539 0.95393 1.21342 1.01548 0.94173 0.96596 1.18636 0.91187 0.90521 0.94816 1.84791 1.48770 1.34409 1.62130 1.19076 0.95538 0.94605 0.91178 1.84865 1.76687 1.38345 1.29474 1.18550 0.87905 0.96076 0.92899 1.84892 1.16966 1.69669 1.58238 1.21365 0.97986 1.01156 0.94561 0.93613 0.93536 0.92692 0.93097 0.90346 0.90084 0.92877 0.97759 0.95646 0.92948 0.93981 0.90181 0.84375 0.75410 0.76112 0.75882 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.16 -2.79 5.18 -26.73 -0.14 -2.93 16 3 C 0.06 1.17 4.79 -3.82 -0.02 1.15 16 4 N -0.53 -10.69 4.69 -237.51 -1.11 -11.81 16 5 C 0.19 4.64 4.49 -4.97 -0.02 4.62 16 6 C -0.50 -13.65 8.41 -34.44 -0.29 -13.94 16 7 H 0.06 1.70 7.29 -52.49 -0.38 1.31 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.08 1.40 4.93 -4.97 -0.02 1.38 16 15 C -0.03 -0.50 4.89 -104.63 -0.51 -1.01 16 16 C -0.12 -1.68 9.63 -39.42 -0.38 -2.06 16 17 C 0.09 1.26 6.71 -39.15 -0.26 1.00 16 18 O -0.49 -5.93 13.29 -34.30 -0.46 -6.38 16 19 C 0.04 0.56 6.73 -39.03 -0.26 0.29 16 20 O -0.48 -5.79 13.07 -45.30 -0.59 -6.38 16 21 C 0.09 1.20 6.71 -39.15 -0.26 0.94 16 22 O -0.49 -5.73 13.29 -34.31 -0.46 -6.18 16 23 C -0.13 -1.82 7.84 -39.43 -0.31 -2.13 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.81 5.71 -51.93 -0.30 0.51 16 28 H 0.08 1.59 6.35 -51.92 -0.33 1.26 16 29 H 0.08 1.65 6.94 -51.93 -0.36 1.29 16 30 H 0.05 0.87 5.92 -51.93 -0.31 0.56 16 31 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 32 H 0.03 0.67 7.93 -51.93 -0.41 0.26 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.70 6.03 -51.93 -0.31 0.38 16 35 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 36 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.39 2.97 9.06 45.56 0.41 3.38 16 38 H 0.38 2.94 9.07 45.56 0.41 3.35 16 39 H 0.39 2.66 9.06 45.56 0.41 3.07 16 40 H 0.13 1.78 7.29 -52.49 -0.38 1.39 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -32.50 329.52 -7.24 -39.74 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.09 Total: 7.94 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.21 Total: -12.88 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.38 Total: -37.07 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.50 Total: -18.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.50 -7.24 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233012022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.903 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds