Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.53001 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99706 * 84.37927 * 5 4 3 7 7 H 1.07999 * 120.00433 * 325.98134 * 6 5 4 8 8 C 1.38817 * 119.99588 * 145.98437 * 6 5 4 9 9 N 1.31614 * 120.00275 * 336.78922 * 8 6 5 10 10 Si 1.86803 * 119.99691 * 156.79271 * 8 6 5 11 11 H 1.48499 * 109.47042 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47133 * 119.99875 * 10 8 6 13 13 H 1.48510 * 109.46619 * 240.00024 * 10 8 6 14 14 C 1.46496 * 119.99906 * 264.38231 * 5 4 3 15 15 C 1.50699 * 109.47426 * 90.00402 * 14 5 4 16 16 C 1.38239 * 119.90585 * 269.72457 * 15 14 5 17 17 C 1.38669 * 120.08371 * 179.72358 * 16 15 14 18 18 O 1.36002 * 120.03839 * 180.29467 * 17 16 15 19 19 C 1.38976 * 119.91218 * 0.52566 * 17 16 15 20 20 O 1.36092 * 120.08629 * 179.77096 * 19 17 16 21 21 C 1.38976 * 119.82369 * 359.74814 * 19 17 16 22 22 O 1.35995 * 120.04698 * 179.97438 * 21 19 17 23 23 C 1.38228 * 119.91405 * 89.99362 * 15 14 5 24 24 H 1.09005 * 109.47279 * 299.99664 * 1 2 3 25 25 H 1.08990 * 109.47368 * 60.00217 * 1 2 3 26 26 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46778 * 239.99797 * 2 1 3 28 28 H 1.09002 * 109.46988 * 119.99717 * 2 1 3 29 29 H 1.08996 * 109.47348 * 59.99743 * 3 2 1 30 30 H 1.09007 * 109.46795 * 300.00112 * 3 2 1 31 31 H 1.09004 * 109.46670 * 59.99889 * 4 3 2 32 32 H 1.08996 * 109.47162 * 300.00143 * 4 3 2 33 33 H 0.97001 * 120.00186 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47121 * 209.99811 * 14 5 4 35 35 H 1.09003 * 109.47390 * 329.99734 * 14 5 4 36 36 H 1.08000 * 119.95506 * 359.97438 * 16 15 14 37 37 H 0.96698 * 113.99555 * 270.22770 * 18 17 16 38 38 H 0.96698 * 114.00008 * 269.97132 * 20 19 17 39 39 H 0.96698 * 113.99568 * 270.01728 * 22 21 19 40 40 H 1.07997 * 119.95430 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1765 3.5086 1.1799 7 1 3.4724 3.3322 1.9796 8 6 5.2013 4.4298 1.3480 9 7 6.2943 4.3384 0.6205 10 14 5.0290 5.7992 2.6068 11 1 3.7150 5.6822 3.2888 12 1 6.1190 5.6901 3.6092 13 1 5.1155 7.1144 1.9224 14 6 4.4201 3.4722 -1.2628 15 6 3.2111 4.1659 -1.8358 16 6 2.3709 3.4866 -2.6981 17 6 1.2543 4.1195 -3.2230 18 8 0.4250 3.4484 -4.0666 19 6 0.9864 5.4418 -2.8897 20 8 -0.1059 6.0678 -3.4064 21 6 1.8367 6.1229 -2.0268 22 8 1.5792 7.4172 -1.6980 23 6 2.9484 5.4813 -1.5021 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9336 0.9285 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 7.0105 4.9818 0.7382 34 1 5.2075 4.2041 -1.0829 35 1 4.7763 2.7212 -1.9680 36 1 2.5822 2.4604 -2.9601 37 1 0.6667 3.5257 -4.9997 38 1 0.0600 6.5204 -4.2447 39 1 1.9866 8.0624 -2.2920 40 1 3.6099 6.0100 -0.8318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233016765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -95.968705 kcal Electronic energy + Delta-G solvation = -22964.825951 eV Core-core repulsion = 19552.590043 eV Total energy + Delta-G solvation = -3412.235909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07036 -37.52221 -37.12069 -36.20957 -35.19681 -33.89953 -31.36740 -29.72493 -28.94268 -27.72268 -25.47786 -23.82601 -22.34690 -21.67045 -20.66019 -20.16060 -18.72971 -17.59227 -17.09956 -16.72429 -16.08799 -15.61244 -14.87211 -14.82219 -14.46414 -13.96689 -13.70392 -13.62685 -13.51318 -13.28941 -12.55343 -12.16399 -12.04057 -11.92443 -11.53386 -11.33769 -11.15789 -11.09406 -10.88033 -10.68989 -10.51736 -10.35417 -10.25830 -10.05734 -10.01029 -9.76535 -9.68837 -8.56676 -8.18421 -7.97707 -6.71238 -5.89223 -3.40652 1.54137 1.56688 3.31440 3.41394 3.47129 3.84100 4.19088 4.33610 4.44240 4.65250 5.19869 5.33392 5.44243 5.51787 5.61356 5.66576 5.75087 5.90336 6.00607 6.04833 6.16646 6.20076 6.36095 6.38471 6.41530 6.52669 6.59252 6.63498 6.66357 6.75280 6.99888 7.08118 7.15605 7.22969 7.51568 7.55139 7.76407 7.79614 8.12144 8.40494 9.08136 9.71554 10.26958 11.10666 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.008184 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.662433 B = 3420.307596 C = 5075.334410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.142 4.142 4 C 0.148 3.852 5 N -0.573 5.573 6 C -0.249 4.249 7 H 0.063 0.937 8 C 0.010 3.990 9 N -0.884 5.884 10 Si 0.890 3.110 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.286 1.286 14 C 0.168 3.832 15 C -0.045 4.045 16 C -0.137 4.137 17 C 0.086 3.914 18 O -0.489 6.489 19 C 0.027 3.973 20 O -0.480 6.480 21 C 0.089 3.911 22 O -0.488 6.488 23 C -0.117 4.117 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.256 0.744 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.126 0.874 37 H 0.379 0.621 38 H 0.371 0.629 39 H 0.380 0.620 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.060 -0.236 -10.425 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.022 3.978 5 N -0.291 5.291 6 C -0.379 4.379 7 H 0.081 0.919 8 C -0.190 4.190 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.042 3.958 15 C -0.048 4.048 16 C -0.157 4.157 17 C 0.041 3.959 18 O -0.298 6.298 19 C -0.019 4.019 20 O -0.288 6.288 21 C 0.044 3.956 22 O -0.297 6.297 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.144 0.856 37 H 0.233 0.767 38 H 0.224 0.776 39 H 0.234 0.766 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.761 -0.807 -8.872 11.184 hybrid contribution 0.380 1.408 -0.592 1.574 sum -6.380 0.601 -9.464 11.429 Atomic orbital electron populations 1.21760 0.96720 1.00504 1.01700 1.21479 0.95111 0.98243 1.01058 1.22271 0.99244 0.94641 1.02044 1.20933 0.91355 0.86545 0.98951 1.43760 1.75222 1.08218 1.01918 1.19101 1.07411 1.18523 0.92870 0.91940 1.25038 0.94152 1.01385 0.98403 1.69984 1.04432 1.35768 1.42474 0.86414 0.77918 0.82487 0.81247 1.19940 1.21572 1.21214 1.20177 0.92420 0.97165 0.86025 1.21178 0.99353 0.92601 0.91708 1.21275 0.93712 1.00311 1.00392 1.18588 0.91075 0.89969 0.96317 1.84931 1.52642 1.72708 1.19482 1.18927 0.90942 0.91330 1.00743 1.85030 1.31401 1.71162 1.41205 1.18711 0.93772 0.85323 0.97837 1.84931 1.76114 1.13196 1.55459 1.21390 0.96382 0.95840 1.00038 0.93090 0.92972 0.93600 0.92778 0.92602 0.92545 0.92318 0.94639 0.93543 0.93438 0.87109 0.94376 0.85601 0.76718 0.77556 0.76562 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.14 -2.66 5.51 -26.73 -0.15 -2.81 16 4 C 0.15 3.04 5.72 -4.04 -0.02 3.02 16 5 N -0.57 -13.57 2.44 -174.61 -0.43 -13.99 16 6 C -0.25 -6.58 9.48 -15.06 -0.14 -6.72 16 7 H 0.06 1.70 7.93 -52.49 -0.42 1.28 16 8 C 0.01 0.27 4.94 -17.43 -0.09 0.18 16 9 N -0.88 -23.96 11.33 55.49 0.63 -23.33 16 10 Si 0.89 21.18 29.61 -169.99 -5.03 16.14 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.17 3.69 5.46 -5.20 -0.03 3.66 16 15 C -0.04 -0.87 5.44 -104.63 -0.57 -1.44 16 16 C -0.14 -2.39 7.81 -39.42 -0.31 -2.70 16 17 C 0.09 1.42 6.71 -39.15 -0.26 1.16 16 18 O -0.49 -7.08 13.29 -34.33 -0.46 -7.54 16 19 C 0.03 0.45 6.73 -39.03 -0.26 0.19 16 20 O -0.48 -7.33 13.07 -45.29 -0.59 -7.92 16 21 C 0.09 1.60 6.71 -39.15 -0.26 1.33 16 22 O -0.49 -8.03 13.29 -34.31 -0.46 -8.48 16 23 C -0.12 -2.32 9.63 -39.42 -0.38 -2.70 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.15 6.15 -51.92 -0.32 0.83 16 31 H 0.04 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.11 2.73 5.27 -51.93 -0.27 2.45 16 35 H 0.04 0.78 7.80 -51.93 -0.40 0.37 16 36 H 0.13 2.05 8.03 -52.49 -0.42 1.63 16 37 H 0.38 3.32 9.06 45.56 0.41 3.73 16 38 H 0.37 3.47 9.07 45.56 0.41 3.89 16 39 H 0.38 4.00 9.06 45.56 0.41 4.41 16 40 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -32.19 337.85 -7.02 -39.22 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -3.52 Total: 11.41 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.26 Total: -10.59 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.20 Total: -37.33 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.50 Total: -23.94 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.19 -7.02 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233016765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.753 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds