Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46563 * 2 1 4 4 N 1.46904 * 109.47132 * 180.53700 * 3 2 1 5 5 C 1.46896 * 110.99905 * 299.31802 * 4 3 2 6 6 C 1.50707 * 109.46855 * 293.58044 * 5 4 3 7 7 H 1.07999 * 119.99789 * 354.97203 * 6 5 4 8 8 C 1.37875 * 119.99677 * 174.96437 * 6 5 4 9 9 N 1.31516 * 120.00342 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99716 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46910 * 90.00388 * 10 8 6 12 12 H 1.48501 * 109.46964 * 210.00088 * 10 8 6 13 13 H 1.48498 * 109.46987 * 330.00395 * 10 8 6 14 14 C 1.46907 * 110.99643 * 63.26563 * 4 3 2 15 15 C 1.50700 * 109.46805 * 66.05261 * 14 4 3 16 16 C 1.38273 * 119.94974 * 259.71743 * 15 14 4 17 17 C 1.38495 * 120.05198 * 180.28281 * 16 15 14 18 18 O 1.36074 * 120.02249 * 180.02562 * 17 16 15 19 19 C 1.39180 * 119.95915 * 359.97438 * 17 16 15 20 20 O 1.35994 * 120.03859 * 180.02562 * 19 17 16 21 21 C 1.38493 * 119.91255 * 0.02562 * 19 17 16 22 22 C 1.38653 * 119.95648 * 79.99674 * 15 14 4 23 23 O 1.35975 * 119.98462 * 359.70133 * 22 15 14 24 24 H 1.09001 * 109.46651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47198 * 299.99951 * 1 2 3 26 26 H 1.08994 * 109.47526 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.47411 * 240.00549 * 2 1 3 28 28 H 1.08993 * 109.47231 * 119.99505 * 2 1 3 29 29 H 1.09001 * 109.47423 * 60.53887 * 3 2 1 30 30 H 1.08997 * 109.47175 * 300.53467 * 3 2 1 31 31 H 1.08998 * 109.47743 * 53.57813 * 5 4 3 32 32 H 1.08996 * 109.47409 * 173.58597 * 5 4 3 33 33 H 0.97002 * 119.99544 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47378 * 306.04740 * 14 4 3 35 35 H 1.09004 * 109.46805 * 186.04561 * 14 4 3 36 36 H 1.08000 * 119.97823 * 0.26373 * 16 15 14 37 37 H 0.96702 * 113.99982 * 269.97731 * 18 17 16 38 38 H 0.96694 * 113.99779 * 269.97306 * 20 19 17 39 39 H 1.08003 * 120.02760 * 179.97438 * 21 19 17 40 40 H 0.96694 * 114.00403 * 89.99633 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 -0.0130 5 6 4.0459 0.7676 1.1760 6 6 3.7060 1.5698 2.4057 7 1 3.2187 2.5286 2.3072 8 6 4.0170 1.0796 3.6562 9 7 4.6106 -0.0878 3.7760 10 14 3.5950 2.0736 5.1805 11 1 2.2339 1.7082 5.6487 12 1 4.5818 1.7812 6.2511 13 1 3.6339 3.5217 4.8536 14 6 4.0245 0.8296 -1.2444 15 6 3.6555 1.6891 -2.4260 16 6 2.5776 1.3443 -3.2206 17 6 2.2402 2.1295 -4.3105 18 8 1.1791 1.7899 -5.0918 19 6 2.9865 3.2666 -4.6055 20 8 2.6562 4.0390 -5.6750 21 6 4.0657 3.6105 -3.8086 22 6 4.4006 2.8213 -2.7182 23 8 5.4599 3.1585 -1.9351 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6844 1.9536 0.8948 30 1 1.6687 1.9591 -0.8851 31 1 3.6073 -0.2269 1.2583 32 1 5.1287 0.6809 1.0866 33 1 4.8297 -0.4325 4.6559 34 1 3.5891 -0.1622 -1.3664 35 1 5.1094 0.7450 -1.1814 36 1 1.9986 0.4619 -2.9915 37 1 1.4049 1.2086 -5.8309 38 1 3.0939 3.7799 -6.4974 39 1 4.6463 4.4923 -4.0361 40 1 6.2991 2.7729 -2.2213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233485943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -100.585305 kcal Electronic energy + Delta-G solvation = -22631.512456 eV Core-core repulsion = 19219.076357 eV Total energy + Delta-G solvation = -3412.436099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.44283 -38.34358 -37.27514 -36.91794 -35.06921 -32.76427 -32.16866 -30.52179 -28.81980 -26.90458 -25.93459 -23.82902 -22.80547 -22.05952 -21.55470 -19.32842 -19.02815 -18.17314 -16.76488 -16.72138 -16.18436 -15.81849 -15.06282 -14.92841 -14.64513 -14.25669 -14.09681 -13.69067 -13.53872 -13.30254 -12.98174 -12.62661 -12.10998 -11.82291 -11.66135 -11.45903 -11.21784 -10.98064 -10.93975 -10.75832 -10.68458 -10.52717 -10.43134 -10.25175 -9.87466 -9.67396 -9.17569 -8.79329 -8.39424 -8.24310 -7.08803 -5.98887 -3.98851 1.08894 1.17615 3.34781 3.36593 3.40971 3.46803 3.92426 4.04181 4.45974 4.47516 4.84009 5.04284 5.16322 5.37007 5.41040 5.54246 5.58024 5.64028 5.74274 5.88659 5.91751 6.01820 6.10470 6.17292 6.25093 6.35052 6.43030 6.53493 6.55536 6.65589 6.78995 7.00072 7.27789 7.34537 7.44869 7.66303 7.85073 7.88180 8.13570 8.24335 8.60058 9.09452 9.65072 11.11752 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.004708 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.695446 B = 5945.549108 C = 6635.269206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.162 4.162 3 C 0.065 3.935 4 N -0.521 5.521 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.094 3.906 15 C -0.080 4.080 16 C -0.110 4.110 17 C 0.066 3.934 18 O -0.487 6.487 19 C 0.086 3.914 20 O -0.487 6.487 21 C -0.162 4.162 22 C 0.140 3.860 23 O -0.475 6.475 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.003 0.997 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.381 0.619 38 H 0.383 0.617 39 H 0.136 0.864 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 0.651 -19.017 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C -0.063 4.063 4 N -0.244 5.244 5 C 0.066 3.934 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.034 4.034 15 C -0.081 4.081 16 C -0.129 4.129 17 C 0.021 3.979 18 O -0.296 6.296 19 C 0.040 3.960 20 O -0.296 6.296 21 C -0.182 4.182 22 C 0.094 3.906 23 O -0.284 6.284 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.236 0.764 38 H 0.238 0.762 39 H 0.154 0.846 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.006 1.998 -17.717 17.942 hybrid contribution 0.395 -1.146 -0.060 1.214 sum -1.611 0.852 -17.777 17.870 Atomic orbital electron populations 1.21653 0.96478 1.00626 1.01333 1.22172 0.95585 1.00426 1.01958 1.22062 0.88433 0.94340 1.01487 1.62365 1.06329 1.54493 1.01178 1.19789 0.94883 0.92920 0.85835 1.21142 1.38235 1.04582 0.89912 0.91958 1.24951 0.95469 0.95078 0.99022 1.69955 1.42213 1.18342 1.23590 0.86546 0.77959 0.80640 0.82590 1.20818 1.21338 1.19770 1.20900 1.00335 0.93514 0.88700 1.20323 0.95337 0.95737 0.96710 1.21180 0.96476 1.00355 0.94909 1.18691 0.90354 0.94318 0.94585 1.84976 1.30675 1.70369 1.43555 1.18484 0.94244 0.91908 0.91345 1.84937 1.70585 1.55668 1.18458 1.21582 0.98592 1.01750 0.96233 1.18049 0.91099 0.92114 0.89350 1.85017 1.17198 1.73670 1.52493 0.93642 0.92700 0.93482 0.93324 0.90462 0.90178 0.93017 0.97976 0.95751 0.93056 0.94549 0.90514 0.84830 0.76440 0.76243 0.84626 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.16 -2.94 5.28 -26.73 -0.14 -3.08 16 3 C 0.07 1.31 4.91 -3.82 -0.02 1.29 16 4 N -0.52 -11.19 4.69 -237.50 -1.11 -12.30 16 5 C 0.19 4.86 4.50 -4.97 -0.02 4.84 16 6 C -0.50 -14.07 8.41 -34.44 -0.29 -14.36 16 7 H 0.06 1.78 7.33 -52.49 -0.38 1.40 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.09 1.63 4.56 -4.97 -0.02 1.61 16 15 C -0.08 -1.21 4.58 -104.46 -0.48 -1.69 16 16 C -0.11 -1.52 8.59 -39.47 -0.34 -1.85 16 17 C 0.07 0.85 6.72 -39.14 -0.26 0.59 16 18 O -0.49 -5.63 13.29 -34.54 -0.46 -6.09 16 19 C 0.09 1.09 6.71 -39.14 -0.26 0.83 16 20 O -0.49 -5.44 13.29 -34.29 -0.46 -5.89 16 21 C -0.16 -2.12 9.92 -39.31 -0.39 -2.51 16 22 C 0.14 2.04 6.67 -39.25 -0.26 1.78 16 23 O -0.47 -7.02 12.73 -19.66 -0.25 -7.28 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.81 6.02 -51.93 -0.31 0.50 16 28 H 0.08 1.64 6.31 -51.93 -0.33 1.31 16 29 H 0.08 1.78 6.97 -51.93 -0.36 1.42 16 30 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 31 H 0.00 0.07 6.01 -51.93 -0.31 -0.24 16 32 H 0.02 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.04 0.61 5.95 -51.93 -0.31 0.30 16 35 H 0.08 1.31 7.63 -51.93 -0.40 0.91 16 36 H 0.13 1.75 7.73 -52.49 -0.41 1.35 16 37 H 0.38 2.28 9.07 45.56 0.41 2.69 16 38 H 0.38 2.08 9.06 45.56 0.41 2.50 16 39 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.38 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -34.71 330.69 -6.94 -41.65 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.14 Total: 6.81 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.22 Total: -12.92 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.38 Total: -38.17 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.16 Total: -19.26 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.71 -6.94 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233485943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.937 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds