Wall clock time and date at job start Tue Mar 31 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.52999 * 109.46642 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46604 * 177.34345 * 4 3 2 6 6 C 1.36943 * 120.00060 * 263.70787 * 5 4 3 7 7 H 1.07991 * 119.99821 * 187.12025 * 6 5 4 8 8 C 1.38804 * 119.99660 * 7.12249 * 6 5 4 9 9 N 1.31618 * 120.00486 * 25.29099 * 8 6 5 10 10 Si 1.86799 * 119.99789 * 205.29005 * 8 6 5 11 11 H 1.48500 * 109.47065 * 60.00179 * 10 8 6 12 12 H 1.48505 * 109.47261 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47426 * 300.00006 * 10 8 6 14 14 C 1.46505 * 120.00064 * 83.71768 * 5 4 3 15 15 C 1.50692 * 109.47321 * 84.72070 * 14 5 4 16 16 C 1.38268 * 119.95833 * 260.02453 * 15 14 5 17 17 C 1.38490 * 120.05685 * 180.28299 * 16 15 14 18 18 O 1.36073 * 120.02198 * 180.02562 * 17 16 15 19 19 C 1.39175 * 119.96108 * 359.97438 * 17 16 15 20 20 O 1.35993 * 120.04161 * 180.02562 * 19 17 16 21 21 C 1.38501 * 119.91219 * 359.97438 * 19 17 16 22 22 C 1.38656 * 119.95453 * 80.29903 * 15 14 5 23 23 O 1.35973 * 119.98383 * 359.70164 * 22 15 14 24 24 H 1.08999 * 109.47171 * 300.00347 * 1 2 3 25 25 H 1.09006 * 109.46904 * 59.99601 * 1 2 3 26 26 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46840 * 239.99906 * 2 1 3 28 28 H 1.09001 * 109.46888 * 119.99907 * 2 1 3 29 29 H 1.09000 * 109.46986 * 60.00447 * 3 2 1 30 30 H 1.09001 * 109.47182 * 299.99726 * 3 2 1 31 31 H 1.09002 * 109.47605 * 57.34492 * 4 3 2 32 32 H 1.09002 * 109.47658 * 297.34256 * 4 3 2 33 33 H 0.97002 * 120.00192 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46513 * 324.72342 * 14 5 4 35 35 H 1.08999 * 109.47122 * 204.72822 * 14 5 4 36 36 H 1.08006 * 119.97357 * 0.25754 * 16 15 14 37 37 H 0.96702 * 114.00156 * 269.97285 * 18 17 16 38 38 H 0.96695 * 113.99541 * 269.97012 * 20 19 17 39 39 H 1.07998 * 120.02538 * 179.97438 * 21 19 17 40 40 H 0.96702 * 114.00044 * 89.99518 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8222 -0.0634 6 6 4.4097 3.3690 -1.2688 7 1 4.8766 4.3421 -1.3047 8 6 4.1656 2.6724 -2.4443 9 7 3.2014 1.7776 -2.4910 10 14 5.2054 3.0049 -3.9601 11 1 6.6292 2.7107 -3.6578 12 1 4.7471 2.1374 -5.0748 13 1 5.0669 4.4304 -4.3524 14 6 4.1712 3.6169 1.1622 15 6 5.4910 3.3272 1.8291 16 6 5.5468 2.4537 2.8995 17 6 6.7577 2.1905 3.5177 18 8 6.8118 1.3304 4.5707 19 6 7.9196 2.8055 3.0607 20 8 9.1097 2.5478 3.6662 21 6 7.8623 3.6794 1.9877 22 6 6.6472 3.9414 1.3722 23 8 6.5900 4.7997 0.3192 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.8877 -0.8643 32 1 3.9331 0.9705 0.9137 33 1 3.0311 1.2906 -3.3124 34 1 3.3573 3.3578 1.8393 35 1 4.1141 4.6769 0.9144 36 1 4.6450 1.9766 3.2541 37 1 6.6900 1.7541 5.4314 38 1 9.3168 3.1462 4.3970 39 1 8.7627 4.1579 1.6318 40 1 6.4357 5.7207 0.5703 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233486253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:03 Heat of formation + Delta-G solvation = -82.065260 kcal Electronic energy + Delta-G solvation = -22764.507314 eV Core-core repulsion = 19352.874304 eV Total energy + Delta-G solvation = -3411.633010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10789 -37.97333 -36.82099 -36.20493 -34.87766 -33.42082 -31.64877 -29.85320 -28.61072 -27.63007 -25.30234 -23.56947 -22.48103 -21.75880 -20.53340 -19.69938 -18.80832 -18.00947 -16.76210 -16.47251 -16.20652 -15.63758 -14.97229 -14.68355 -14.13953 -13.90475 -13.51843 -13.47105 -13.34763 -13.06694 -12.75315 -12.49192 -11.78420 -11.69266 -11.43735 -11.37134 -11.07077 -10.93671 -10.61190 -10.40450 -10.28556 -10.15034 -10.10881 -9.91803 -9.83323 -9.54501 -9.16582 -8.51919 -8.23829 -7.96430 -6.83122 -5.67809 -2.94717 1.37384 1.46938 3.47174 3.54477 3.60130 3.66831 4.16602 4.27163 4.62847 4.72857 5.12756 5.36299 5.54593 5.56467 5.69282 5.83092 5.92469 5.93064 6.02195 6.05409 6.20680 6.33818 6.45361 6.51380 6.55457 6.61318 6.76893 6.80244 6.85324 6.93601 6.99466 7.22833 7.31479 7.48573 7.82250 7.88412 7.88759 8.12985 8.14722 8.44091 9.32973 9.94389 10.37573 11.36313 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.006475 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.883591 B = 4323.047904 C = 5798.955136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.114 4.114 4 C 0.167 3.833 5 N -0.582 5.582 6 C -0.236 4.236 7 H 0.083 0.917 8 C -0.005 4.005 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.288 1.288 12 H -0.295 1.295 13 H -0.287 1.287 14 C 0.191 3.809 15 C -0.101 4.101 16 C -0.112 4.112 17 C 0.063 3.937 18 O -0.489 6.489 19 C 0.075 3.925 20 O -0.489 6.489 21 C -0.163 4.163 22 C 0.135 3.865 23 O -0.472 6.472 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.015 0.985 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.000 1.000 33 H 0.250 0.750 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.131 0.869 37 H 0.378 0.622 38 H 0.379 0.621 39 H 0.131 0.869 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 4.369 13.299 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.154 4.154 4 C 0.042 3.958 5 N -0.300 5.300 6 C -0.364 4.364 7 H 0.100 0.900 8 C -0.201 4.201 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.213 1.213 14 C 0.062 3.938 15 C -0.105 4.105 16 C -0.132 4.132 17 C 0.018 3.982 18 O -0.297 6.297 19 C 0.029 3.971 20 O -0.297 6.297 21 C -0.182 4.182 22 C 0.089 3.911 23 O -0.281 6.281 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.232 0.768 38 H 0.233 0.767 39 H 0.149 0.851 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.195 2.880 11.898 12.652 hybrid contribution 0.561 1.090 0.145 1.235 sum 3.756 3.970 12.043 13.226 Atomic orbital electron populations 1.21735 0.97548 0.99827 1.01053 1.21387 0.94154 0.99307 1.00371 1.22048 0.98622 0.93962 1.00730 1.20931 0.91835 0.84860 0.98213 1.44106 1.74199 1.10466 1.01269 1.19366 1.31629 1.02608 0.82840 0.89971 1.24668 0.98346 0.99860 0.97258 1.70166 1.28120 1.29435 1.26407 0.86513 0.81384 0.77150 0.82746 1.21512 1.22084 1.21341 1.19587 0.89425 0.96108 0.88635 1.21579 0.99408 0.96210 0.93337 1.21129 0.96859 0.98028 0.97135 1.18748 0.91872 0.94963 0.92577 1.84975 1.94936 1.34081 1.15741 1.18427 0.84776 0.97825 0.96039 1.84946 1.35086 1.58584 1.51103 1.21551 0.98588 1.00770 0.97338 1.18051 0.90965 0.94301 0.87821 1.85104 1.94367 1.19835 1.28754 0.93898 0.92917 0.94254 0.92064 0.94394 0.96633 0.88712 0.88913 0.98198 0.93970 0.93758 0.92199 0.85155 0.76780 0.76701 0.85118 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.02 16 2 C -0.11 -2.19 5.93 -26.73 -0.16 -2.35 16 3 C -0.11 -2.52 5.00 -26.73 -0.13 -2.65 16 4 C 0.17 4.00 4.90 -4.04 -0.02 3.98 16 5 N -0.58 -14.01 2.52 -174.61 -0.44 -14.45 16 6 C -0.24 -6.26 9.24 -15.06 -0.14 -6.40 16 7 H 0.08 2.15 6.76 -52.49 -0.35 1.80 16 8 C -0.01 -0.14 4.92 -17.43 -0.09 -0.22 16 9 N -0.90 -24.74 8.69 55.49 0.48 -24.26 16 10 Si 0.89 22.25 29.62 -169.99 -5.04 17.22 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.19 3.72 5.48 -5.19 -0.03 3.69 16 15 C -0.10 -1.80 5.47 -104.46 -0.57 -2.38 16 16 C -0.11 -1.84 9.60 -39.48 -0.38 -2.22 16 17 C 0.06 0.99 6.72 -39.14 -0.26 0.73 16 18 O -0.49 -6.76 13.29 -34.54 -0.46 -7.22 16 19 C 0.07 1.15 6.71 -39.14 -0.26 0.89 16 20 O -0.49 -6.60 13.29 -34.29 -0.46 -7.05 16 21 C -0.16 -2.58 9.92 -39.31 -0.39 -2.97 16 22 C 0.13 2.33 6.67 -39.25 -0.26 2.07 16 23 O -0.47 -8.12 11.09 -19.66 -0.22 -8.34 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.01 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.09 2.41 6.56 -51.93 -0.34 2.07 16 31 H 0.09 2.53 5.74 -51.93 -0.30 2.24 16 32 H 0.00 0.00 8.12 -51.93 -0.42 -0.43 16 33 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.04 0.81 7.92 -51.93 -0.41 0.40 16 35 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 36 H 0.13 2.02 8.04 -52.48 -0.42 1.60 16 37 H 0.38 3.00 9.07 45.56 0.41 3.42 16 38 H 0.38 2.88 9.06 45.56 0.41 3.29 16 39 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.38 4.34 9.06 45.56 0.41 4.75 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -33.04 333.48 -6.92 -39.96 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.50 Total: 8.98 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.32 Total: -9.86 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.04 Total: -38.71 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.13 Total: -22.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.04 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.04 -6.92 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233486253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.105 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds