Wall clock time and date at job start Tue Mar 31 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47483 * 2 1 4 4 S 1.81001 * 109.47204 * 120.00227 * 2 1 3 5 5 C 1.76198 * 100.00210 * 65.00099 * 4 2 1 6 6 N 1.32579 * 119.22068 * 359.97438 * 5 4 2 7 7 C 1.32247 * 120.73171 * 180.02562 * 6 5 4 8 8 C 1.38646 * 119.20362 * 0.02562 * 7 6 5 9 9 C 1.38598 * 118.56736 * 0.25210 * 8 7 6 10 10 C 1.50704 * 120.39446 * 179.72377 * 9 8 7 11 11 N 1.46901 * 109.47001 * 94.99737 * 10 9 8 12 12 C 1.46899 * 111.00107 * 293.95105 * 11 10 9 13 13 C 1.46905 * 110.99781 * 169.99503 * 11 10 9 14 14 C 1.50698 * 109.46960 * 189.99956 * 13 11 10 15 15 H 1.08000 * 120.00486 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99941 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00007 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47124 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47280 * 119.99432 * 18 16 14 21 21 H 1.48501 * 109.47031 * 240.00045 * 18 16 14 22 22 N 1.32276 * 119.20470 * 359.51032 * 9 8 7 23 23 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46524 * 299.99496 * 1 2 3 25 25 H 1.08998 * 109.47340 * 59.99723 * 1 2 3 26 26 H 1.09005 * 109.47161 * 240.00143 * 2 1 3 27 27 H 1.08994 * 109.47048 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47059 * 300.00449 * 3 2 1 29 29 H 1.09005 * 109.46805 * 59.99925 * 3 2 1 30 30 H 1.08002 * 120.39703 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.71174 * 179.97438 * 8 7 6 32 32 H 1.09003 * 109.47024 * 214.99498 * 10 9 8 33 33 H 1.08997 * 109.47257 * 334.99507 * 10 9 8 34 34 H 1.09000 * 109.46565 * 60.00326 * 12 11 10 35 35 H 1.08997 * 109.47013 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47320 * 300.00284 * 12 11 10 37 37 H 1.08993 * 109.47390 * 310.00258 * 13 11 10 38 38 H 1.09006 * 109.46754 * 70.00362 * 13 11 10 39 39 H 0.97001 * 120.00234 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1333 -0.8533 1.4778 5 6 1.5440 -2.4817 1.1530 6 7 0.8671 -2.7145 0.0370 7 6 0.4107 -3.9251 -0.2365 8 6 0.6471 -4.9558 0.6602 9 6 1.3530 -4.6765 1.8198 10 6 1.6279 -5.7645 2.8258 11 7 2.9568 -6.3383 2.5756 12 6 2.9933 -7.0386 1.2848 13 6 3.3594 -7.2311 3.6705 14 6 4.8100 -7.6049 3.5063 15 1 5.3764 -7.2177 2.6723 16 6 5.4142 -8.4413 4.4209 17 7 4.7247 -8.9125 5.4368 18 14 7.2125 -8.9041 4.2178 19 1 7.7587 -8.2468 3.0033 20 1 7.9766 -8.4561 5.4096 21 1 7.3317 -10.3778 4.0784 22 7 1.7861 -3.4447 2.0309 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 -0.1397 -4.1088 -1.1474 31 1 0.2851 -5.9538 0.4615 32 1 1.5965 -5.3456 3.8317 33 1 0.8721 -6.5443 2.7333 34 1 2.7592 -6.3370 0.4841 35 1 3.9882 -7.4541 1.1249 36 1 2.2595 -7.8446 1.2878 37 1 3.2211 -6.7218 4.6241 38 1 2.7471 -8.1326 3.6480 39 1 5.1498 -9.5006 6.0805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248829014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:14 Heat of formation + Delta-G solvation = 47.128346 kcal Electronic energy + Delta-G solvation = -19331.009363 eV Core-core repulsion = 16400.024230 eV Total energy + Delta-G solvation = -2930.985133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82784 -36.81998 -35.05797 -33.65562 -32.65952 -31.87384 -28.00872 -27.38124 -27.02468 -24.77797 -24.40141 -22.40623 -21.94821 -20.42100 -17.93838 -17.30786 -16.39327 -16.15110 -15.50691 -15.32493 -14.78237 -14.60981 -14.36314 -14.02401 -13.90472 -13.58842 -13.32550 -12.53841 -12.43481 -12.12371 -11.98503 -11.59440 -11.56571 -11.51016 -11.21092 -10.96308 -10.78162 -10.67268 -10.58278 -10.46554 -10.24434 -10.00265 -9.85881 -9.30249 -9.07032 -8.45397 -7.78324 -7.34920 -6.04218 -4.05329 0.84444 1.15507 1.23727 2.06130 3.31259 3.38719 3.43955 3.70198 4.16535 4.41737 4.51840 4.60793 4.66502 4.71467 5.06943 5.07526 5.14841 5.20327 5.32332 5.34655 5.45494 5.58888 5.65994 5.68298 5.86653 5.88551 5.95856 6.06333 6.12417 6.21984 6.38189 6.65850 7.02149 7.21565 7.25302 7.75417 7.97737 8.03544 8.11495 8.47618 9.01806 9.58790 11.06776 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026283 B = 0.003542 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.075501 B = 7903.102842 C = 8477.342992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.137 4.137 4 S 0.000 6.000 5 C 0.296 3.704 6 N -0.531 5.531 7 C 0.154 3.846 8 C -0.232 4.232 9 C 0.217 3.783 10 C 0.097 3.903 11 N -0.529 5.529 12 C 0.034 3.966 13 C 0.194 3.806 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.285 1.285 22 N -0.481 5.481 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.167 0.833 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.015 0.985 37 H 0.034 0.966 38 H -0.006 1.006 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 14.988 -12.470 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.213 4.213 3 C -0.195 4.195 4 S 0.235 5.765 5 C -0.080 4.080 6 N -0.250 5.250 7 C -0.014 4.014 8 C -0.258 4.258 9 C 0.067 3.933 10 C -0.032 4.032 11 N -0.254 5.254 12 C -0.115 4.115 13 C 0.070 3.930 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.211 1.211 22 N -0.197 5.197 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.033 0.967 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.632 16.693 -11.194 22.287 hybrid contribution -0.641 -2.567 -1.246 2.924 sum -10.272 14.126 -12.439 21.443 Atomic orbital electron populations 1.22117 0.92590 1.04064 1.01853 1.23262 1.00131 0.98830 0.99028 1.21663 1.01853 0.93021 1.03003 1.85925 1.67966 0.94034 1.28558 1.24852 0.94497 0.99613 0.89035 1.68702 1.13477 1.23609 1.19195 1.23089 0.92908 0.87511 0.97854 1.22729 1.04027 1.02079 0.96945 1.21878 0.86877 0.91654 0.92900 1.21051 0.92864 0.92350 0.96980 1.62104 1.21107 1.37809 1.04404 1.22301 1.02229 0.95713 0.91219 1.19786 0.96077 0.89056 0.88102 1.21164 0.95198 1.27633 1.10508 0.91787 1.24979 0.98358 0.96083 0.95159 1.69963 1.36420 1.33698 1.13717 0.86427 0.84794 0.77943 0.78191 1.19657 1.20922 1.21125 1.68401 1.19978 1.00347 1.31007 0.90316 0.92353 0.92119 0.88183 0.91565 0.90749 0.91664 0.81547 0.83695 0.88876 0.93386 0.94029 0.90336 0.96681 0.94822 0.98809 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.04 16 2 C -0.08 -0.83 2.75 -26.73 -0.07 -0.90 16 3 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 4 S 0.00 0.00 21.70 -107.50 -2.33 -2.34 16 5 C 0.30 4.70 7.65 -90.84 -0.70 4.00 16 6 N -0.53 -7.30 6.85 -13.44 -0.09 -7.39 16 7 C 0.15 1.83 11.30 -17.22 -0.19 1.63 16 8 C -0.23 -3.06 8.51 -39.30 -0.33 -3.39 16 9 C 0.22 3.64 5.66 -82.27 -0.47 3.18 16 10 C 0.10 1.77 5.33 -4.97 -0.03 1.74 16 11 N -0.53 -11.62 4.74 -245.82 -1.17 -12.79 16 12 C 0.03 0.66 9.04 60.06 0.54 1.20 16 13 C 0.19 5.05 4.72 -4.97 -0.02 5.03 16 14 C -0.51 -14.31 8.46 -34.44 -0.29 -14.60 16 15 H 0.06 1.81 7.12 -52.49 -0.37 1.44 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 N -0.48 -8.75 10.34 -9.67 -0.10 -8.85 16 23 H 0.08 0.87 5.64 -51.93 -0.29 0.58 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 1.06 7.95 -51.91 -0.41 0.64 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.09 1.76 7.93 -51.93 -0.41 1.35 16 33 H 0.05 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.04 0.72 6.42 -51.93 -0.33 0.38 16 35 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.94 7.93 -51.93 -0.41 0.52 16 38 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -31.78 333.99 -9.87 -41.65 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.94 Total: -3.80 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.98 Total: -2.36 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.62 Total: -54.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.33 Total: -2.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.78 -9.87 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248829014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.777 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds