Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47280 * 2 1 4 4 H 1.09000 * 109.47291 * 179.84345 * 3 2 1 5 5 C 1.50700 * 109.47450 * 299.84316 * 3 2 1 6 6 H 1.08003 * 119.99797 * 119.99577 * 5 3 2 7 7 C 1.37876 * 120.00117 * 299.99993 * 5 3 2 8 8 N 1.31512 * 119.99765 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00222 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46960 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47004 * 120.00064 * 9 7 5 12 12 H 1.48503 * 109.47245 * 240.00011 * 9 7 5 13 13 N 1.46898 * 109.47055 * 59.84382 * 3 2 1 14 14 C 1.46901 * 111.00485 * 85.93014 * 13 3 2 15 15 C 1.52998 * 109.47777 * 175.55261 * 14 13 3 16 16 H 1.09004 * 109.46756 * 305.00656 * 15 14 13 17 17 O 1.42906 * 109.46620 * 64.99826 * 15 14 13 18 18 C 1.50692 * 109.47439 * 184.99892 * 15 14 13 19 19 C 1.38249 * 119.93000 * 279.73350 * 18 15 14 20 20 C 1.38246 * 120.14606 * 179.72453 * 19 18 15 21 21 C 1.38565 * 119.99841 * 0.54197 * 20 19 18 22 22 O 1.35997 * 120.07149 * 179.70360 * 21 20 19 23 23 C 1.39155 * 119.85223 * 359.73239 * 21 20 19 24 24 O 1.35995 * 120.06780 * 180.02562 * 23 21 20 25 25 C 1.38253 * 119.92163 * 99.99862 * 18 15 14 26 26 H 1.08995 * 109.47170 * 295.58673 * 1 2 3 27 27 H 1.09004 * 109.47529 * 175.58758 * 1 2 3 28 28 H 1.09005 * 109.47062 * 55.58912 * 1 2 3 29 29 H 1.09001 * 109.47160 * 120.00263 * 2 1 3 30 30 H 1.09006 * 109.46913 * 240.00317 * 2 1 3 31 31 H 0.96998 * 120.00425 * 180.02562 * 8 7 5 32 32 H 1.00904 * 111.00320 * 209.89179 * 13 3 2 33 33 H 1.08998 * 109.46976 * 295.56033 * 14 13 3 34 34 H 1.09004 * 109.46501 * 55.55403 * 14 13 3 35 35 H 0.96704 * 113.99355 * 60.00526 * 17 15 14 36 36 H 1.08000 * 119.92510 * 359.97438 * 19 18 15 37 37 H 1.08002 * 120.00229 * 180.24603 * 20 19 18 38 38 H 0.96700 * 113.99879 * 270.02313 * 22 21 20 39 39 H 0.96698 * 113.99971 * 269.96946 * 24 23 21 40 40 H 1.07992 * 119.99877 * 0.02894 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 0.0028 5 6 1.5409 2.1518 -1.2324 6 1 0.9197 3.0300 -1.1356 7 6 1.8772 1.6797 -2.4834 8 7 2.6339 0.6106 -2.6011 9 14 1.2580 2.5585 -4.0110 10 1 0.4310 3.7250 -3.6099 11 1 2.4148 3.0248 -4.8169 12 1 0.4352 1.6241 -4.8204 13 7 1.5472 2.1360 1.1975 14 6 2.4398 1.9093 2.3420 15 6 1.9567 2.7337 3.5369 16 1 1.8787 3.7817 3.2475 17 8 0.6758 2.2589 3.9565 18 6 2.9393 2.5976 4.6714 19 6 2.9071 1.4775 5.4811 20 6 3.8100 1.3453 6.5196 21 6 4.7427 2.3420 6.7577 22 8 5.6278 2.2163 7.7826 23 6 4.7714 3.4720 5.9461 24 8 5.6853 4.4526 6.1755 25 6 3.8673 3.5957 4.9034 26 1 -0.3633 0.4438 0.9268 27 1 -0.3634 -1.0246 -0.0791 28 1 -0.3633 0.5808 -0.8479 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 2.8709 0.2786 -3.4812 32 1 1.4288 3.1224 1.0211 33 1 2.4330 0.8512 2.6040 34 1 3.4532 2.2117 2.0779 35 1 0.6704 1.3310 4.2291 36 1 2.1775 0.7022 5.2995 37 1 3.7853 0.4675 7.1482 38 1 5.3140 2.5833 8.6204 39 1 5.3804 5.1401 6.7834 40 1 3.8872 4.4718 4.2723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -114.929450 kcal Electronic energy + Delta-G solvation = -21951.700594 eV Core-core repulsion = 18538.642486 eV Total energy + Delta-G solvation = -3413.058108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48150 -38.29057 -37.15312 -36.24698 -35.43872 -32.61768 -31.23780 -30.48580 -29.66813 -27.33985 -25.45239 -23.23384 -23.09281 -22.69693 -21.17045 -19.15158 -18.96034 -17.88177 -16.93175 -16.60202 -16.49707 -15.59318 -15.14030 -15.01990 -14.63984 -14.23323 -13.94071 -13.62634 -13.44399 -13.18051 -12.90745 -12.55313 -12.13254 -12.06514 -11.76986 -11.72273 -11.48577 -10.97707 -10.94974 -10.77377 -10.49236 -10.36096 -10.14728 -9.96305 -9.58772 -9.34130 -9.04261 -8.78026 -8.60210 -8.46874 -7.22984 -6.02045 -4.07585 0.90986 1.02735 3.27298 3.28546 3.36899 3.40678 3.84403 3.89058 4.38919 4.55388 4.62649 4.65190 5.01730 5.16955 5.29012 5.30897 5.43588 5.48470 5.65512 5.68953 5.99835 6.06404 6.11195 6.21479 6.42065 6.49895 6.55912 6.69346 6.87002 7.14304 7.24353 7.30146 7.49485 7.54928 7.75326 7.76319 7.80990 7.86363 8.26496 8.37696 8.66038 9.01846 9.57352 11.03897 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026392 B = 0.003536 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.659396 B = 7916.164959 C = 8301.444019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.675 5.675 14 C 0.036 3.964 15 C 0.150 3.850 16 H 0.105 0.895 17 O -0.541 6.541 18 C -0.097 4.097 19 C -0.102 4.102 20 C -0.127 4.127 21 C 0.073 3.927 22 O -0.489 6.489 23 C 0.081 3.919 24 O -0.488 6.488 25 C -0.120 4.120 26 H 0.044 0.956 27 H 0.012 0.988 28 H 0.056 0.944 29 H 0.007 0.993 30 H 0.086 0.914 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.370 0.630 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.384 0.616 39 H 0.385 0.615 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 3.954 19.715 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.306 5.306 14 C -0.094 4.094 15 C 0.090 3.910 16 H 0.122 0.878 17 O -0.346 6.346 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.145 4.145 21 C 0.028 3.972 22 O -0.298 6.298 23 C 0.036 3.964 24 O -0.297 6.297 25 C -0.139 4.139 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.217 0.783 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.240 0.760 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.597 3.339 18.777 19.139 hybrid contribution 0.337 0.843 -0.301 0.956 sum 1.934 4.182 18.477 19.043 Atomic orbital electron populations 1.21447 0.97401 0.97338 1.01492 1.21420 0.95104 0.98197 0.99296 1.19172 0.92857 0.91568 0.85691 0.98326 1.21225 1.31539 1.11973 0.90297 0.92191 1.24892 0.95046 0.95013 0.98958 1.69894 1.36697 1.22783 1.23388 0.86519 0.78565 0.79718 0.83090 1.19735 1.21166 1.21003 1.60667 1.48330 1.15894 1.05739 1.22588 0.95042 0.99524 0.92285 1.20907 0.81233 0.99480 0.89376 0.87765 1.86629 1.29447 1.31270 1.87216 1.20669 0.97329 0.94155 0.97631 1.20846 0.98864 0.97483 0.94865 1.21306 0.94495 0.99187 0.99523 1.18788 0.92045 0.94639 0.91751 1.84932 1.41860 1.82958 1.20066 1.18756 0.91369 0.89563 0.96695 1.84936 1.39613 1.36361 1.68801 1.21238 0.94331 1.00289 0.98037 0.93739 0.96884 0.92542 0.97398 0.89597 0.93016 0.85220 0.91438 0.95334 0.78271 0.85155 0.84873 0.76081 0.75960 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.15 0.35 -2.32 16 2 C -0.10 -2.45 5.59 -26.74 -0.15 -2.60 16 3 C 0.21 5.28 2.30 -68.87 -0.16 5.13 16 4 H 0.00 -0.02 7.71 -51.93 -0.40 -0.42 16 5 C -0.51 -13.65 7.26 -34.44 -0.25 -13.90 16 6 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -13.80 5.60 -107.95 -0.60 -14.40 16 14 C 0.04 0.61 5.15 -3.82 -0.02 0.59 16 15 C 0.15 2.07 3.34 -27.89 -0.09 1.97 16 16 H 0.10 1.42 7.98 -51.93 -0.41 1.01 16 17 O -0.54 -7.63 13.13 -35.23 -0.46 -8.10 16 18 C -0.10 -1.19 4.97 -104.62 -0.52 -1.71 16 19 C -0.10 -1.12 9.31 -39.57 -0.37 -1.49 16 20 C -0.13 -1.32 9.98 -39.46 -0.39 -1.71 16 21 C 0.07 0.82 6.72 -39.12 -0.26 0.55 16 22 O -0.49 -4.88 13.29 -34.23 -0.45 -5.34 16 23 C 0.08 0.95 6.72 -39.12 -0.26 0.69 16 24 O -0.49 -5.19 13.29 -34.23 -0.45 -5.65 16 25 C -0.12 -1.44 9.60 -39.46 -0.38 -1.82 16 26 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 1.37 7.07 -51.93 -0.37 1.00 16 29 H 0.01 0.17 7.60 -51.93 -0.39 -0.23 16 30 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.70 8.13 -39.29 -0.32 6.38 16 33 H 0.07 1.16 7.61 -51.93 -0.40 0.76 16 34 H 0.03 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.37 4.13 7.49 45.56 0.34 4.48 16 36 H 0.13 1.17 6.76 -52.49 -0.35 0.82 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.38 1.74 9.06 45.56 0.41 2.15 16 39 H 0.39 1.99 9.06 45.56 0.41 2.40 16 40 H 0.14 1.48 8.03 -52.49 -0.42 1.06 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -32.67 333.66 -7.35 -40.02 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -3.41 Total: 11.85 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.60 Total: -15.01 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.02 Total: -38.92 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.37 Total: -19.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.67 -7.35 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.907 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds