Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 H 1.08998 * 109.46771 * 174.05959 * 3 2 1 5 5 C 1.50703 * 109.47014 * 54.06964 * 3 2 1 6 6 H 1.08004 * 119.99343 * 240.00060 * 5 3 2 7 7 C 1.37871 * 120.00056 * 59.99519 * 5 3 2 8 8 N 1.31514 * 120.00237 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99743 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47061 * 119.99993 * 9 7 5 12 12 H 1.48500 * 109.46733 * 239.99886 * 9 7 5 13 13 N 1.46895 * 109.47556 * 294.06397 * 3 2 1 14 14 C 1.46895 * 110.99994 * 275.51854 * 13 3 2 15 15 C 1.52998 * 109.47199 * 176.73023 * 14 13 3 16 16 H 1.09001 * 109.47174 * 59.99481 * 15 14 13 17 17 O 1.42904 * 109.47049 * 299.99751 * 15 14 13 18 18 C 1.50701 * 109.47405 * 179.97438 * 15 14 13 19 19 C 1.38251 * 119.92591 * 84.99761 * 18 15 14 20 20 C 1.38240 * 120.14512 * 180.02562 * 19 18 15 21 21 C 1.38567 * 119.99962 * 359.97438 * 20 19 18 22 22 O 1.36002 * 120.07266 * 180.02562 * 21 20 19 23 23 C 1.39154 * 119.85522 * 0.02562 * 21 20 19 24 24 O 1.35994 * 120.07426 * 179.97438 * 23 21 20 25 25 C 1.38242 * 119.92502 * 264.72394 * 18 15 14 26 26 H 1.09005 * 109.47053 * 58.59566 * 1 2 3 27 27 H 1.09004 * 109.46616 * 298.60348 * 1 2 3 28 28 H 1.09000 * 109.47270 * 178.59706 * 1 2 3 29 29 H 1.09003 * 109.47322 * 120.00411 * 2 1 3 30 30 H 1.08998 * 109.46783 * 240.00593 * 2 1 3 31 31 H 0.97007 * 119.99872 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99615 * 39.46781 * 13 3 2 33 33 H 1.09002 * 109.47243 * 296.72722 * 14 13 3 34 34 H 1.09001 * 109.47481 * 56.72691 * 14 13 3 35 35 H 0.96698 * 113.99647 * 299.99628 * 17 15 14 36 36 H 1.08000 * 119.92664 * 359.97438 * 19 18 15 37 37 H 1.08004 * 120.00450 * 179.97438 * 20 19 18 38 38 H 0.96692 * 114.00126 * 90.00349 * 22 21 20 39 39 H 0.96703 * 113.99709 * 89.99528 * 24 23 21 40 40 H 1.07997 * 120.00235 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1064 5 6 1.4214 2.1940 1.1505 6 1 0.8145 3.0672 0.9611 7 6 1.6300 1.7669 2.4447 8 7 2.3693 0.7039 2.6752 9 14 0.8625 2.6981 3.8707 10 1 0.0830 3.8489 3.3481 11 1 -0.0387 1.7913 4.6262 12 1 1.9338 3.1945 4.7714 13 7 1.6709 2.0925 -1.2645 14 6 2.6553 1.7987 -2.3145 15 6 2.1960 2.4232 -3.6335 16 1 2.1051 3.5026 -3.5123 17 8 0.9282 1.8770 -4.0030 18 6 3.2062 2.1223 -4.7105 19 6 3.1394 0.9287 -5.4048 20 6 4.0641 0.6478 -6.3933 21 6 5.0604 1.5639 -6.6905 22 8 5.9706 1.2893 -7.6630 23 6 5.1276 2.7653 -5.9916 24 8 6.1039 3.6674 -6.2793 25 6 4.1942 3.0430 -5.0059 26 1 -0.3633 0.5355 -0.8772 27 1 -0.3633 0.4920 0.9023 28 1 -0.3634 -1.0273 -0.0252 29 1 1.8934 -0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 2.5158 0.4032 3.5858 32 1 0.7428 1.8213 -1.5530 33 1 3.6224 2.2153 -2.0327 34 1 2.7462 0.7193 -2.4357 35 1 0.9345 0.9182 -4.1282 36 1 2.3637 0.2137 -5.1738 37 1 4.0101 -0.2856 -6.9340 38 1 5.7071 1.5883 -8.5440 39 1 5.8598 4.3066 -6.9626 40 1 4.2417 3.9765 -4.4648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -114.620390 kcal Electronic energy + Delta-G solvation = -21989.383006 eV Core-core repulsion = 18576.338300 eV Total energy + Delta-G solvation = -3413.044706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -40.49085 -38.39783 -37.14946 -36.41112 -35.53826 -32.55999 -31.30469 -30.42104 -29.64118 -27.28613 -25.57602 -23.33806 -23.06229 -22.70358 -21.16492 -19.33352 -19.03492 -17.89858 -16.98794 -16.65417 -16.32078 -15.60632 -15.08166 -15.00868 -14.83616 -14.38442 -13.92922 -13.79004 -13.32483 -13.01381 -12.89845 -12.50656 -12.38515 -12.16338 -11.85005 -11.72764 -11.52225 -11.01473 -10.92304 -10.78511 -10.51467 -10.47555 -10.14381 -9.97458 -9.69171 -9.53385 -9.06179 -8.94795 -8.60213 -8.33673 -7.21859 -5.96432 -3.97779 0.90727 1.02798 3.27034 3.32600 3.40840 3.46078 3.84529 3.89151 4.42673 4.51941 4.56456 4.65249 5.00419 5.19367 5.30192 5.35595 5.41353 5.56600 5.60191 5.73618 5.96137 6.07312 6.11981 6.21794 6.34432 6.36574 6.40625 6.52243 6.57803 6.89354 7.14652 7.27223 7.29128 7.50978 7.55289 7.65772 7.70425 7.90277 8.28814 8.57349 8.63644 9.08452 9.66023 11.10801 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.003492 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.639512 B = 8016.693332 C = 8346.986828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.036 3.964 15 C 0.147 3.853 16 H 0.116 0.884 17 O -0.551 6.551 18 C -0.096 4.096 19 C -0.104 4.104 20 C -0.127 4.127 21 C 0.073 3.927 22 O -0.489 6.489 23 C 0.082 3.918 24 O -0.487 6.487 25 C -0.119 4.119 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.092 0.908 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.334 0.666 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.369 0.631 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.384 0.616 39 H 0.385 0.615 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 1.114 -20.258 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.095 4.095 15 C 0.088 3.912 16 H 0.134 0.866 17 O -0.356 6.356 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.145 4.145 21 C 0.027 3.973 22 O -0.298 6.298 23 C 0.037 3.963 24 O -0.297 6.297 25 C -0.138 4.138 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.110 0.890 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.216 0.784 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.241 0.759 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.838 1.696 -18.993 19.279 hybrid contribution -0.660 -0.731 -0.160 0.998 sum 2.178 0.965 -19.153 19.301 Atomic orbital electron populations 1.21569 0.97566 0.97964 1.01416 1.22096 0.95112 1.01129 1.00068 1.19220 0.96026 0.88677 0.85429 0.95070 1.21100 1.30323 1.11494 0.89690 0.91929 1.24918 0.95591 0.95197 0.98731 1.69898 1.39345 1.24218 1.20187 0.86517 0.79014 0.79923 0.82432 1.19720 1.21250 1.21214 1.60807 1.04178 1.63184 1.03041 1.22535 0.98209 0.97271 0.91482 1.21024 0.80705 0.99842 0.89663 0.86613 1.86645 1.31168 1.26238 1.91509 1.20638 0.97143 0.94181 0.97722 1.20815 0.98969 0.96574 0.95895 1.21290 0.93953 0.99757 0.99523 1.18787 0.91188 0.93895 0.93380 1.84932 1.43438 1.82542 1.18906 1.18758 0.90180 0.89761 0.97599 1.84939 1.38172 1.45079 1.61489 1.21245 0.93620 1.00806 0.98084 0.94964 0.91537 0.95958 0.89006 0.97275 0.93202 0.84681 0.90816 0.95948 0.78402 0.85373 0.84926 0.76086 0.75942 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.14 -3.35 5.50 -26.73 -0.15 -3.50 16 3 C 0.21 5.26 2.33 -68.86 -0.16 5.10 16 4 H 0.03 0.86 7.85 -51.93 -0.41 0.45 16 5 C -0.49 -13.18 7.35 -34.44 -0.25 -13.43 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -25.34 11.39 55.43 0.63 -24.71 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.10 6.25 -107.96 -0.67 -14.77 16 14 C 0.04 0.61 5.17 -3.83 -0.02 0.59 16 15 C 0.15 2.04 3.48 -27.88 -0.10 1.94 16 16 H 0.12 1.65 8.05 -51.93 -0.42 1.24 16 17 O -0.55 -7.48 12.42 -35.23 -0.44 -7.92 16 18 C -0.10 -1.17 5.01 -104.62 -0.52 -1.70 16 19 C -0.10 -1.14 9.32 -39.58 -0.37 -1.51 16 20 C -0.13 -1.32 9.98 -39.46 -0.39 -1.71 16 21 C 0.07 0.81 6.72 -39.12 -0.26 0.55 16 22 O -0.49 -4.87 13.29 -34.25 -0.46 -5.32 16 23 C 0.08 0.96 6.72 -39.12 -0.26 0.70 16 24 O -0.49 -5.17 13.29 -34.22 -0.45 -5.62 16 25 C -0.12 -1.42 9.61 -39.46 -0.38 -1.80 16 26 H 0.03 0.62 6.42 -51.93 -0.33 0.28 16 27 H 0.07 1.55 7.04 -51.93 -0.37 1.19 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.41 6.25 -51.93 -0.32 2.08 16 30 H 0.01 0.18 7.26 -51.93 -0.38 -0.19 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.72 5.91 -39.29 -0.23 6.49 16 33 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.02 0.39 7.26 -51.93 -0.38 0.01 16 35 H 0.37 3.89 7.39 45.56 0.34 4.22 16 36 H 0.13 1.15 6.60 -52.49 -0.35 0.80 16 37 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.38 1.73 9.06 45.56 0.41 2.15 16 39 H 0.39 1.98 9.06 45.56 0.41 2.39 16 40 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -32.55 329.96 -7.31 -39.86 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -3.25 Total: 12.84 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.61 Total: -15.68 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.04 Total: -39.48 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.35 Total: -18.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.55 -7.31 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.761 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds