Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 H 1.09002 * 109.47099 * 177.95931 * 3 2 1 5 5 C 1.50700 * 109.47412 * 57.95905 * 3 2 1 6 6 H 1.08000 * 120.00021 * 240.00495 * 5 3 2 7 7 C 1.37879 * 119.99877 * 59.99578 * 5 3 2 8 8 N 1.31515 * 119.99930 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00058 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47293 * 90.00358 * 9 7 5 11 11 H 1.48505 * 109.47325 * 210.00190 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00576 * 9 7 5 13 13 N 1.46904 * 109.47367 * 297.95861 * 3 2 1 14 14 C 1.46895 * 110.99973 * 273.78142 * 13 3 2 15 15 C 1.52998 * 109.47199 * 174.61061 * 14 13 3 16 16 H 1.09001 * 109.47090 * 304.99596 * 15 14 13 17 17 O 1.42903 * 109.47444 * 64.99765 * 15 14 13 18 18 C 1.50704 * 109.47339 * 184.99889 * 15 14 13 19 19 C 1.38253 * 119.92360 * 279.72556 * 18 15 14 20 20 C 1.38247 * 120.14657 * 179.72650 * 19 18 15 21 21 C 1.38562 * 119.99286 * 0.54466 * 20 19 18 22 22 O 1.36003 * 120.07240 * 179.70546 * 21 20 19 23 23 C 1.39152 * 119.85976 * 359.72769 * 21 20 19 24 24 O 1.35993 * 120.07583 * 180.02562 * 23 21 20 25 25 C 1.38243 * 119.92840 * 100.00035 * 18 15 14 26 26 H 1.08997 * 109.47115 * 54.45471 * 1 2 3 27 27 H 1.09003 * 109.46755 * 294.45111 * 1 2 3 28 28 H 1.09003 * 109.47210 * 174.45537 * 1 2 3 29 29 H 1.09002 * 109.47435 * 120.00057 * 2 1 3 30 30 H 1.09006 * 109.47065 * 239.99713 * 2 1 3 31 31 H 0.96995 * 120.00429 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00085 * 149.81990 * 13 3 2 33 33 H 1.09002 * 109.47243 * 294.60761 * 14 13 3 34 34 H 1.09001 * 109.47481 * 54.60730 * 14 13 3 35 35 H 0.96699 * 113.99945 * 59.99757 * 17 15 14 36 36 H 1.08005 * 119.92741 * 359.97438 * 19 18 15 37 37 H 1.07993 * 120.00235 * 180.25153 * 20 19 18 38 38 H 0.96698 * 113.99826 * 270.02501 * 22 21 20 39 39 H 0.96704 * 114.00306 * 269.98220 * 24 23 21 40 40 H 1.08002 * 119.99845 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4426 0.0366 5 6 1.4968 2.1674 1.2044 6 1 0.8797 3.0441 1.0740 7 6 1.7875 1.7113 2.4726 8 7 2.5392 0.6438 2.6313 9 14 1.1137 2.6094 3.9654 10 1 -0.2073 2.0385 4.3321 11 1 2.0541 2.4521 5.1040 12 1 0.9585 4.0515 3.6472 13 7 1.5910 2.1206 -1.2234 14 6 2.5280 1.8851 -2.3299 15 6 1.9617 2.4913 -3.6155 16 1 0.9645 2.0906 -3.7976 17 8 1.8868 3.9119 -3.4795 18 6 2.8617 2.1443 -4.7734 19 6 4.0194 2.8688 -4.9883 20 6 4.8512 2.5508 -6.0458 21 6 4.5194 1.5113 -6.8997 22 8 5.3335 1.2010 -7.9441 23 6 3.3512 0.7858 -6.6868 24 8 3.0216 -0.2356 -7.5220 25 6 2.5248 1.1061 -5.6218 26 1 -0.3633 0.5974 -0.8361 27 1 -0.3633 0.4254 0.9355 28 1 -0.3634 -1.0229 -0.0993 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.7435 0.3227 3.5235 32 1 1.4621 3.1084 -1.0627 33 1 3.4863 2.3508 -2.1000 34 1 2.6684 0.8126 -2.4651 35 1 2.7397 4.3368 -3.3152 36 1 4.2767 3.6823 -4.3261 37 1 5.7571 3.1156 -6.2090 38 1 5.1246 1.6759 -8.7602 39 1 2.4818 0.0330 -8.2781 40 1 1.6173 0.5449 -5.4546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -116.282498 kcal Electronic energy + Delta-G solvation = -21953.642803 eV Core-core repulsion = 18540.526022 eV Total energy + Delta-G solvation = -3413.116781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47735 -38.33051 -37.14396 -36.25605 -35.47723 -32.58668 -31.22396 -30.49207 -29.68857 -27.36857 -25.46029 -23.25389 -23.07043 -22.66817 -21.13917 -19.14136 -18.95023 -17.88830 -16.93432 -16.68986 -16.43400 -15.60980 -15.09770 -15.01375 -14.80492 -14.25689 -13.89506 -13.54824 -13.48581 -13.20613 -12.91752 -12.60674 -12.11590 -12.02807 -11.81890 -11.69193 -11.40208 -10.99205 -10.95396 -10.78899 -10.50428 -10.35829 -10.18200 -9.96767 -9.61880 -9.35679 -9.03804 -8.78589 -8.60069 -8.46668 -7.25887 -6.01699 -4.07144 0.91518 1.03628 3.27853 3.29877 3.36680 3.39463 3.85208 3.89777 4.39166 4.56227 4.56796 4.66031 5.01449 5.19256 5.29209 5.30810 5.45348 5.57875 5.61173 5.76105 5.96445 6.08083 6.13251 6.21490 6.40224 6.53211 6.54155 6.71922 6.86065 7.15104 7.23920 7.30057 7.50344 7.55763 7.69325 7.74006 7.80488 7.84794 8.26695 8.38213 8.67168 9.02462 9.57682 11.04352 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.003476 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.664504 B = 8052.352612 C = 8331.158668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.037 3.963 15 C 0.149 3.851 16 H 0.115 0.885 17 O -0.551 6.551 18 C -0.096 4.096 19 C -0.104 4.104 20 C -0.127 4.127 21 C 0.073 3.927 22 O -0.489 6.489 23 C 0.082 3.918 24 O -0.488 6.488 25 C -0.118 4.118 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.012 0.988 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.368 0.632 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.384 0.616 39 H 0.385 0.615 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 3.894 -19.570 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.093 4.093 15 C 0.090 3.910 16 H 0.133 0.867 17 O -0.356 6.356 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.145 4.145 21 C 0.028 3.972 22 O -0.298 6.298 23 C 0.036 3.964 24 O -0.297 6.297 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.103 0.897 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.216 0.784 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.240 0.760 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.896 2.425 -18.888 19.137 hybrid contribution 0.673 1.445 0.480 1.665 sum 2.568 3.870 -18.407 18.984 Atomic orbital electron populations 1.21437 0.97456 0.97120 1.01606 1.21431 0.95143 0.98232 0.99277 1.19127 0.93221 0.91645 0.85180 0.98334 1.21188 1.31615 1.11991 0.90313 0.92235 1.24889 0.95071 0.95039 0.98876 1.69889 1.37367 1.23155 1.22383 0.86571 0.78786 0.80100 0.82396 1.20631 1.21364 1.19948 1.60592 1.46705 1.16817 1.07127 1.22522 0.94061 1.00905 0.91858 1.21019 0.98607 0.81063 0.90341 0.86690 1.86648 1.35349 1.19048 1.94528 1.20661 0.96318 0.95514 0.97229 1.20834 0.93712 1.00091 0.97603 1.21291 1.00326 0.96863 0.96066 1.18787 0.91196 0.95248 0.92015 1.84933 1.55419 1.68511 1.20959 1.18759 0.93319 0.90461 0.93817 1.84936 1.73857 1.31512 1.39387 1.21252 1.00310 0.97290 0.94839 0.93429 0.92941 0.96872 0.89675 0.97247 0.92970 0.84540 0.96000 0.90839 0.78426 0.85344 0.84928 0.76092 0.75951 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.46 37.16 0.35 -2.34 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.31 2.30 -68.86 -0.16 5.16 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.66 7.34 -34.44 -0.25 -13.92 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.13 11.34 55.43 0.63 -24.50 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.95 5.51 -107.95 -0.59 -14.54 16 14 C 0.04 0.63 5.10 -3.83 -0.02 0.61 16 15 C 0.15 2.07 3.45 -27.88 -0.10 1.97 16 16 H 0.12 1.66 8.00 -51.93 -0.42 1.25 16 17 O -0.55 -7.50 12.80 -35.23 -0.45 -7.95 16 18 C -0.10 -1.18 4.97 -104.61 -0.52 -1.70 16 19 C -0.10 -1.14 9.31 -39.57 -0.37 -1.51 16 20 C -0.13 -1.33 9.98 -39.46 -0.39 -1.72 16 21 C 0.07 0.81 6.72 -39.12 -0.26 0.55 16 22 O -0.49 -4.89 13.29 -34.25 -0.46 -5.35 16 23 C 0.08 0.96 6.72 -39.12 -0.26 0.69 16 24 O -0.49 -5.19 13.29 -34.22 -0.45 -5.64 16 25 C -0.12 -1.42 9.60 -39.46 -0.38 -1.80 16 26 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 27 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 2.30 6.13 -51.93 -0.32 1.98 16 30 H 0.01 0.20 7.43 -51.93 -0.39 -0.18 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.34 6.92 7.89 -39.29 -0.31 6.61 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.33 7.39 -51.93 -0.38 0.95 16 35 H 0.37 3.84 7.49 45.56 0.34 4.18 16 36 H 0.13 1.15 6.76 -52.48 -0.35 0.80 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.38 1.75 9.06 45.56 0.41 2.16 16 39 H 0.39 1.99 9.07 45.56 0.41 2.40 16 40 H 0.14 1.53 8.03 -52.49 -0.42 1.11 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -32.41 333.12 -7.34 -39.75 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -3.40 Total: 12.15 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.61 Total: -15.02 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.03 Total: -39.04 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.36 Total: -18.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.41 -7.34 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.535 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds