Wall clock time and date at job start Tue Mar 31 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47416 * 2 1 4 4 H 1.08993 * 109.47336 * 181.99703 * 3 2 1 5 5 C 1.50702 * 109.46850 * 61.99113 * 3 2 1 6 6 H 1.07989 * 120.00242 * 245.65324 * 5 3 2 7 7 C 1.37878 * 119.99411 * 65.66072 * 5 3 2 8 8 N 1.31511 * 119.99468 * 193.51340 * 7 5 3 9 9 Si 1.86798 * 120.00581 * 13.50797 * 7 5 3 10 10 H 1.48499 * 109.47022 * 84.97940 * 9 7 5 11 11 H 1.48490 * 109.47565 * 204.98117 * 9 7 5 12 12 H 1.48502 * 109.46884 * 324.98176 * 9 7 5 13 13 N 1.46899 * 109.46848 * 301.99663 * 3 2 1 14 14 C 1.46900 * 111.00060 * 279.22217 * 13 3 2 15 15 C 1.50697 * 115.54966 * 304.30557 * 14 13 3 16 16 C 1.38228 * 119.98631 * 93.91036 * 15 14 13 17 17 C 1.38182 * 120.04826 * 180.25481 * 16 15 14 18 18 C 1.38495 * 120.02828 * 359.44465 * 17 16 15 19 19 F 1.35101 * 120.01339 * 180.28166 * 18 17 16 20 20 C 1.38397 * 119.97226 * 0.54594 * 18 17 16 21 21 C 1.38443 * 119.94709 * 359.73587 * 20 18 17 22 22 F 1.35102 * 120.00823 * 179.97438 * 21 20 18 23 23 C 1.52999 * 117.49954 * 89.97683 * 14 13 3 24 24 C 1.53001 * 117.49755 * 158.63727 * 14 13 3 25 25 H 1.08995 * 109.47099 * 184.92749 * 1 2 3 26 26 H 1.09005 * 109.46925 * 304.92143 * 1 2 3 27 27 H 1.09001 * 109.47725 * 64.91961 * 1 2 3 28 28 H 1.09006 * 109.46836 * 240.00243 * 2 1 3 29 29 H 1.08996 * 109.47709 * 120.00425 * 2 1 3 30 30 H 0.97007 * 120.00031 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00277 * 155.27193 * 13 3 2 32 32 H 1.07998 * 119.97716 * 359.97030 * 16 15 14 33 33 H 1.08010 * 119.98535 * 179.69923 * 17 16 15 34 34 H 1.07998 * 120.02896 * 179.74460 * 20 18 17 35 35 H 1.08990 * 117.50268 * 215.00138 * 23 14 13 36 36 H 1.09009 * 117.49706 * 0.02562 * 23 14 13 37 37 H 1.09006 * 117.50037 * 359.97438 * 24 14 13 38 38 H 1.09002 * 117.49756 * 145.00212 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 -0.0358 5 6 1.5784 2.1385 1.2544 6 1 0.8819 2.9612 1.1904 7 6 2.0456 1.7248 2.4839 8 7 1.4568 2.1393 3.5844 9 14 3.5146 0.5756 2.5866 10 1 4.7686 1.3695 2.5359 11 1 3.4609 -0.1839 3.8615 12 1 3.4823 -0.3724 1.4440 13 7 1.5114 2.1487 -1.1746 14 6 2.2986 1.8367 -2.3749 15 6 3.7769 2.1108 -2.2721 16 6 4.6423 1.1005 -1.8967 17 6 5.9974 1.3517 -1.7969 18 6 6.4914 2.6133 -2.0841 19 9 7.8170 2.8571 -1.9919 20 6 5.6259 3.6256 -2.4603 21 6 4.2677 3.3742 -2.5543 22 9 3.4216 4.3616 -2.9209 23 6 1.8595 0.6359 -3.2153 24 6 1.6319 2.0579 -3.7342 25 1 -0.3633 -1.0238 0.0883 26 1 -0.3633 0.5883 0.8427 27 1 -0.3634 0.4356 -0.9307 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7851 1.8479 4.4495 31 1 1.4775 3.1442 -1.0131 32 1 4.2586 0.1152 -1.6767 33 1 6.6722 0.5628 -1.4987 34 1 6.0096 4.6108 -2.6805 35 1 2.6398 0.0442 -3.6938 36 1 0.9862 0.0777 -2.8777 37 1 0.6091 2.4347 -3.7378 38 1 2.2627 2.4016 -4.5541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:51 Heat of formation + Delta-G solvation = -36.285278 kcal Electronic energy + Delta-G solvation = -22843.934974 eV Core-core repulsion = 19323.199618 eV Total energy + Delta-G solvation = -3520.735356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -49.00190 -48.84302 -39.53983 -37.23013 -34.89023 -31.88138 -30.90383 -30.46348 -29.77522 -26.42368 -23.67859 -23.23258 -22.83391 -21.84652 -20.36790 -18.95825 -18.09779 -17.01637 -16.65445 -16.17225 -15.93135 -15.58003 -15.26268 -15.19168 -14.68131 -14.30358 -14.18523 -13.55759 -13.27741 -13.20368 -12.80316 -12.64755 -12.22611 -12.01957 -11.92746 -11.46793 -11.26654 -11.07990 -10.87492 -10.56766 -10.53898 -10.20111 -9.96279 -9.58322 -9.26515 -9.06347 -8.98820 -8.57804 -8.45472 -7.65765 -6.13731 -4.08671 0.98329 1.04683 3.23714 3.31550 3.34341 3.39114 3.87472 3.99000 4.37443 4.45935 4.56196 4.65540 4.74426 4.86856 5.14350 5.19737 5.35228 5.54733 5.79393 5.81909 5.86923 5.90050 5.98506 6.06145 6.15940 6.20879 6.28719 6.32934 6.45789 6.51548 6.78156 6.83228 6.93095 7.14329 7.25779 7.51643 7.65507 7.87629 8.23676 8.58219 8.94666 9.51472 10.99342 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.007931 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.735567 B = 3529.803513 C = 4491.721844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.189 3.811 4 H 0.002 0.998 5 C -0.518 4.518 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.626 5.626 14 C 0.075 3.925 15 C -0.107 4.107 16 C -0.045 4.045 17 C -0.166 4.166 18 C 0.122 3.878 19 F -0.136 7.136 20 C -0.196 4.196 21 C 0.142 3.858 22 F -0.125 7.125 23 C -0.153 4.153 24 C -0.157 4.157 25 H 0.018 0.982 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.344 0.656 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -2.073 -14.061 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.081 3.919 4 H 0.020 0.980 5 C -0.556 4.556 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.528 5.528 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.255 5.255 14 C -0.018 4.018 15 C -0.110 4.110 16 C -0.064 4.064 17 C -0.185 4.185 18 C 0.103 3.897 19 F -0.114 7.114 20 C -0.215 4.215 21 C 0.122 3.878 22 F -0.104 7.104 23 C -0.191 4.191 24 C -0.194 4.194 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.248 -2.498 -13.961 15.498 hybrid contribution 1.854 0.200 0.587 1.955 sum 8.102 -2.297 -13.374 15.804 Atomic orbital electron populations 1.21476 0.96008 0.98183 1.02554 1.21858 0.96866 0.97786 0.98513 1.19514 0.92725 0.91568 0.88117 0.98016 1.20936 1.27945 1.18050 0.88668 0.90498 1.24823 0.96317 0.95606 0.95584 1.69946 1.39393 1.45680 0.97830 0.87365 0.84201 0.82013 0.78064 1.20586 1.21461 1.17440 1.60641 1.49017 1.13881 1.02006 1.20002 0.85550 1.04677 0.91584 1.19992 0.97038 0.92100 1.01884 1.20839 0.91308 0.99572 0.94636 1.21187 0.96749 0.96102 1.04481 1.17256 0.77474 0.93904 1.01097 1.91506 1.31151 1.94978 1.93793 1.20952 0.92086 1.00823 1.07677 1.17121 0.86584 0.85271 0.98833 1.91526 1.70148 1.60082 1.88625 1.23100 1.03266 0.90903 1.01785 1.23040 1.01983 0.99456 0.94923 0.96253 0.91390 0.93218 0.95344 0.92965 0.92657 0.83687 0.84016 0.84193 0.83656 0.89404 0.87636 0.87936 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.15 0.35 -2.17 16 2 C -0.11 -2.34 5.02 -26.73 -0.13 -2.47 16 3 C 0.19 4.17 1.75 -68.86 -0.12 4.05 16 4 H 0.00 0.05 4.38 -51.93 -0.23 -0.17 16 5 C -0.52 -13.82 7.76 -34.44 -0.27 -14.08 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.21 5.37 -17.82 -0.10 2.12 16 8 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.86 20.68 25.90 -169.99 -4.40 16.28 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.25 -5.56 5.30 56.52 0.30 -5.26 16 13 N -0.63 -12.08 5.67 -95.42 -0.54 -12.62 16 14 C 0.07 1.19 1.47 -132.75 -0.19 1.00 16 15 C -0.11 -1.68 4.33 -104.55 -0.45 -2.13 16 16 C -0.04 -0.66 8.08 -39.61 -0.32 -0.98 16 17 C -0.17 -2.27 10.02 -39.51 -0.40 -2.66 16 18 C 0.12 1.71 7.30 -39.43 -0.29 1.42 16 19 F -0.14 -1.86 17.27 2.25 0.04 -1.83 16 20 C -0.20 -2.72 10.01 -39.45 -0.39 -3.12 16 21 C 0.14 2.18 7.17 -39.43 -0.28 1.89 16 22 F -0.13 -1.95 16.41 2.25 0.04 -1.92 16 23 C -0.15 -2.11 8.69 -26.69 -0.23 -2.34 16 24 C -0.16 -2.12 9.66 -26.69 -0.26 -2.38 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 27 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 28 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 29 H 0.05 1.17 4.68 -51.93 -0.24 0.92 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.34 6.96 8.45 -39.29 -0.33 6.63 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.52 7.89 -51.92 -0.41 1.11 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -28.35 314.74 -7.37 -35.72 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.94 Total: 7.25 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.08 Total: -21.86 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.23 Total: -38.39 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.40 Total: 16.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.35 -7.37 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.563 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds