Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08995 * 109.47098 * 305.00377 * 3 2 1 5 5 C 1.50699 * 109.47042 * 184.99735 * 3 2 1 6 6 H 1.07995 * 120.00419 * 240.00417 * 5 3 2 7 7 C 1.37880 * 119.99846 * 60.00356 * 5 3 2 8 8 N 1.31516 * 119.99831 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47141 * 90.00045 * 9 7 5 11 11 H 1.48504 * 109.46955 * 210.00210 * 9 7 5 12 12 H 1.48497 * 109.47161 * 329.99886 * 9 7 5 13 13 N 1.46895 * 109.46831 * 65.00371 * 3 2 1 14 14 C 1.46634 * 111.00384 * 66.04265 * 13 3 2 15 15 C 1.50627 * 110.32155 * 176.05769 * 14 13 3 16 16 C 1.38728 * 118.42068 * 162.46192 * 15 14 13 17 17 C 1.38013 * 120.37659 * 179.85555 * 16 15 14 18 18 C 1.38258 * 119.87081 * 359.96476 * 17 16 15 19 19 C 1.37209 * 119.75656 * 359.71914 * 18 17 16 20 20 C 1.37554 * 122.04989 * 342.22642 * 15 14 13 21 21 C 1.50711 * 121.59379 * 0.65171 * 20 15 14 22 22 F 1.39900 * 109.38642 * 222.91246 * 21 20 15 23 23 F 1.39894 * 109.39187 * 103.21158 * 21 20 15 24 24 C 1.47163 * 111.00093 * 189.02031 * 13 3 2 25 25 H 1.09005 * 109.46755 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47160 * 299.99566 * 1 2 3 27 27 H 1.08999 * 109.46942 * 60.00481 * 1 2 3 28 28 H 1.09001 * 109.46716 * 240.00198 * 2 1 3 29 29 H 1.08998 * 109.47226 * 120.00436 * 2 1 3 30 30 H 0.97004 * 120.00304 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.30195 * 296.26719 * 14 13 3 32 32 H 1.08998 * 109.29843 * 55.84803 * 14 13 3 33 33 H 1.08006 * 119.81009 * 359.83922 * 16 15 14 34 34 H 1.08006 * 120.06272 * 179.97438 * 17 16 15 35 35 H 1.07999 * 120.09109 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.62386 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.62843 * 285.00108 * 24 13 3 38 38 H 1.08997 * 109.63163 * 45.38683 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6514 2.0991 1.2552 14 6 2.3329 1.4882 2.4009 15 6 1.9986 2.2332 3.6666 16 6 2.2354 1.6087 4.8825 17 6 1.9469 2.2554 6.0671 18 6 1.4195 3.5332 6.0433 19 6 1.1913 4.1534 4.8409 20 6 1.4747 3.5049 3.6483 21 6 1.1905 4.2233 2.3543 22 9 1.6136 5.5527 2.4585 23 9 -0.1847 4.1942 2.0992 24 6 1.9344 3.5424 1.2050 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0611 -2.9499 31 1 2.0136 0.4505 2.4986 32 1 3.4101 1.5198 2.2380 33 1 2.6477 0.6106 4.9022 34 1 2.1330 1.7642 7.0109 35 1 1.1928 4.0427 6.9682 36 1 0.7796 5.1518 4.8249 37 1 3.0062 3.7094 1.3127 38 1 1.5944 3.9494 0.2528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -70.538253 kcal Electronic energy + Delta-G solvation = -23012.218321 eV Core-core repulsion = 19489.997644 eV Total energy + Delta-G solvation = -3522.220677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.57263 -46.51535 -39.66031 -37.32715 -33.68958 -31.83145 -31.57678 -30.60238 -28.52354 -26.68660 -24.50478 -23.47743 -22.46920 -21.95738 -20.02257 -19.01738 -17.41471 -16.96480 -16.61535 -16.15253 -15.60565 -15.06124 -14.59936 -14.39810 -13.97232 -13.70175 -13.53550 -13.33249 -12.93211 -12.89248 -12.69334 -12.55734 -12.28032 -11.96432 -11.71914 -11.55436 -11.30339 -11.09351 -10.98158 -10.79715 -10.68960 -10.27892 -10.11881 -9.76939 -9.60898 -9.23556 -8.88603 -8.59668 -8.47788 -7.40315 -6.11612 -4.26223 1.29239 1.47882 3.19821 3.28128 3.30220 3.77473 4.00524 4.29217 4.40120 4.72240 4.78146 5.01248 5.07599 5.11656 5.17004 5.45979 5.60340 5.64661 5.81714 5.98553 6.06609 6.11562 6.25427 6.34233 6.39224 6.43215 6.48552 6.52197 6.61465 6.70608 6.97799 7.02331 7.11210 7.17293 7.44615 7.63099 7.72666 7.97497 8.02257 8.28041 8.81162 9.42414 10.88299 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.006069 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.118527 B = 4612.873666 C = 4741.223761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.045 0.955 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.073 3.927 8 N -0.880 5.880 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.520 5.520 14 C 0.081 3.919 15 C -0.026 4.026 16 C -0.128 4.128 17 C -0.101 4.101 18 C -0.137 4.137 19 C -0.087 4.087 20 C -0.144 4.144 21 C 0.340 3.660 22 F -0.203 7.203 23 F -0.190 7.190 24 C 0.027 3.973 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 3.446 12.011 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.063 0.937 5 C -0.593 4.593 6 H 0.076 0.924 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.244 5.244 14 C -0.047 4.047 15 C -0.027 4.027 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.156 4.156 19 C -0.105 4.105 20 C -0.145 4.145 21 C 0.303 3.697 22 F -0.184 7.184 23 F -0.171 7.171 24 C -0.102 4.102 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.545 3.311 11.845 12.800 hybrid contribution 1.808 0.261 -0.203 1.838 sum -1.737 3.572 11.642 12.301 Atomic orbital electron populations 1.21728 0.98610 0.98628 1.00832 1.21597 0.92470 0.98583 1.02159 1.19387 0.93442 0.91515 0.84679 0.93685 1.21678 0.92475 1.39171 1.05961 0.92365 1.24884 0.98006 0.94697 0.95482 1.69866 1.34988 1.37613 1.09330 0.86656 0.85849 0.78476 0.77429 1.20573 1.21068 1.19978 1.62744 1.56252 0.99826 1.05563 1.21160 0.99023 0.98024 0.86469 1.19945 0.93868 0.92630 0.96267 1.21092 1.01563 1.00499 0.91498 1.21151 0.97812 0.94928 0.98017 1.20791 1.01569 0.95705 0.97487 1.20841 0.98007 0.99712 0.91944 1.19824 1.04896 0.96044 0.93693 1.19558 0.77362 0.77747 0.95015 1.92967 1.90031 1.38219 1.97170 1.93010 1.32565 1.96334 1.95191 1.22775 0.99004 0.92096 0.96372 0.95429 0.93256 0.94070 0.88636 0.94827 0.92653 0.88921 0.90849 0.85435 0.85902 0.85930 0.86010 0.91371 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.80 37.16 0.36 -2.43 16 2 C -0.11 -2.45 5.15 -26.73 -0.14 -2.59 16 3 C 0.22 4.99 1.71 -68.87 -0.12 4.87 16 4 H 0.05 1.17 7.91 -51.93 -0.41 0.76 16 5 C -0.55 -13.83 7.22 -34.44 -0.25 -14.08 16 6 H 0.06 1.45 5.81 -52.49 -0.30 1.14 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -23.56 11.29 55.43 0.63 -22.93 16 9 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.52 -10.59 4.09 -229.60 -0.94 -11.53 16 14 C 0.08 1.50 4.61 -5.16 -0.02 1.47 16 15 C -0.03 -0.44 5.78 -104.73 -0.61 -1.04 16 16 C -0.13 -1.77 9.65 -39.48 -0.38 -2.15 16 17 C -0.10 -1.21 10.05 -39.66 -0.40 -1.61 16 18 C -0.14 -1.69 10.02 -39.95 -0.40 -2.09 16 19 C -0.09 -1.26 9.30 -39.79 -0.37 -1.63 16 20 C -0.14 -2.43 5.34 -104.70 -0.56 -2.99 16 21 C 0.34 6.14 2.08 -27.93 -0.06 6.08 16 22 F -0.20 -3.56 16.51 2.25 0.04 -3.53 16 23 F -0.19 -3.63 17.04 2.25 0.04 -3.60 16 24 C 0.03 0.53 4.60 -3.73 -0.02 0.52 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 2.40 5.95 -51.93 -0.31 2.09 16 29 H 0.03 0.72 6.41 -51.93 -0.33 0.39 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.09 1.68 6.52 -51.93 -0.34 1.34 16 32 H 0.07 1.45 5.95 -51.93 -0.31 1.15 16 33 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.62 7.86 -52.48 -0.41 1.21 16 37 H 0.07 1.35 7.46 -51.93 -0.39 0.97 16 38 H 0.10 1.88 7.86 -51.93 -0.41 1.47 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -26.53 308.63 -8.52 -35.05 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.86 Total: 2.61 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.05 Total: -15.88 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.31 Total: -34.46 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.08 Total: -7.12 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.53 -8.52 -35.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.490 kcal (2) G-P(sol) polarization free energy of solvation -26.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds