Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47120 * 2 1 4 4 H 1.09002 * 109.46982 * 179.15932 * 3 2 1 5 5 C 1.50701 * 109.47547 * 299.16092 * 3 2 1 6 6 H 1.07996 * 120.00212 * 119.99806 * 5 3 2 7 7 C 1.37881 * 119.99520 * 300.00572 * 5 3 2 8 8 N 1.31513 * 119.99558 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00129 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47111 * 90.00521 * 9 7 5 11 11 H 1.48506 * 109.46731 * 210.00215 * 9 7 5 12 12 H 1.48501 * 109.47204 * 329.99975 * 9 7 5 13 13 N 1.46905 * 109.47223 * 59.16390 * 3 2 1 14 14 C 1.46620 * 111.00311 * 56.43358 * 13 3 2 15 15 C 1.50619 * 110.50778 * 175.91974 * 14 13 3 16 16 C 1.38726 * 118.42949 * 162.70313 * 15 14 13 17 17 C 1.38019 * 120.37859 * 179.52310 * 16 15 14 18 18 C 1.38260 * 119.86770 * 359.97438 * 17 16 15 19 19 C 1.38030 * 119.83122 * 0.14953 * 18 17 16 20 20 C 1.37831 * 121.84706 * 342.41055 * 15 14 13 21 21 C 1.50718 * 121.66132 * 0.63718 * 20 15 14 22 22 F 1.39901 * 109.39339 * 103.05008 * 21 20 15 23 23 F 1.39899 * 109.39323 * 222.76104 * 21 20 15 24 24 C 1.47168 * 110.99827 * 179.46139 * 13 3 2 25 25 H 1.09006 * 109.47350 * 305.32268 * 1 2 3 26 26 H 1.09002 * 109.46939 * 65.31929 * 1 2 3 27 27 H 1.08996 * 109.47420 * 185.32421 * 1 2 3 28 28 H 1.08994 * 109.47303 * 239.99510 * 2 1 3 29 29 H 1.09005 * 109.46789 * 120.00129 * 2 1 3 30 30 H 0.97002 * 119.99958 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.26700 * 55.65390 * 14 13 3 32 32 H 1.09003 * 109.26472 * 296.18639 * 14 13 3 33 33 H 1.08004 * 119.81324 * 359.24599 * 16 15 14 34 34 H 1.07994 * 120.06661 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.08402 * 180.12646 * 18 17 16 36 36 H 1.07999 * 119.82848 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.62869 * 45.62469 * 24 13 3 38 38 H 1.08997 * 109.79426 * 285.12753 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0151 5 6 1.5548 2.1469 -1.2407 6 1 0.9326 3.0254 -1.1545 7 6 1.9051 1.6697 -2.4859 8 7 1.4812 2.2841 -3.5687 9 14 2.9816 0.1504 -2.6350 10 1 2.1240 -1.0609 -2.6862 11 1 3.7906 0.2371 -3.8774 12 1 3.8861 0.0674 -1.4602 13 7 1.5339 2.1408 1.1892 14 6 1.9164 1.4346 2.4159 15 6 1.4785 2.2109 3.6301 16 6 1.4202 1.5521 4.8495 17 6 1.0338 2.2270 5.9897 18 6 0.7031 3.5675 5.9176 19 6 0.7581 4.2240 4.7046 20 6 1.1444 3.5461 3.5581 21 6 1.1850 4.3026 2.2551 22 9 -0.1176 4.4641 1.7710 23 9 1.7594 5.5607 2.4661 24 6 2.0158 3.5308 1.2295 25 1 -0.3634 0.5942 0.8385 26 1 -0.3633 0.4291 -0.9338 27 1 -0.3634 -1.0232 0.0954 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7279 1.9487 -4.4448 31 1 2.9993 1.3128 2.4380 32 1 1.4442 0.4522 2.4274 33 1 1.6744 0.5039 4.9063 34 1 0.9906 1.7093 6.9365 35 1 0.4022 4.0996 6.8080 36 1 0.4994 5.2710 4.6482 37 1 1.9001 3.9870 0.2464 38 1 3.0660 3.5490 1.5205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -57.863812 kcal Electronic energy + Delta-G solvation = -23085.263536 eV Core-core repulsion = 19563.592464 eV Total energy + Delta-G solvation = -3521.671072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.56305 -46.49493 -39.77252 -37.55750 -33.93444 -32.04620 -31.65329 -30.81129 -28.54155 -27.22011 -24.24710 -23.79580 -22.72777 -22.02686 -20.25692 -19.07704 -17.49078 -17.07147 -16.46981 -16.25991 -15.80919 -15.38528 -14.85576 -14.36737 -14.13060 -13.84943 -13.51469 -13.42608 -13.41035 -12.91712 -12.85751 -12.61367 -12.51513 -12.23747 -12.03628 -11.77702 -11.40905 -11.19877 -10.97280 -10.80132 -10.66973 -10.35685 -10.20226 -9.97620 -9.42357 -9.08721 -9.00085 -8.73435 -8.60559 -7.65810 -6.13087 -4.12336 1.17602 1.32124 3.21211 3.29307 3.33111 3.63560 3.92757 4.22140 4.32952 4.61250 4.64129 4.85748 4.95972 5.03770 5.18143 5.31751 5.45203 5.47204 5.63049 5.68344 5.89664 5.93201 5.96675 6.00620 6.04103 6.21836 6.29504 6.39414 6.39683 6.50260 6.58749 6.76155 6.86645 6.91447 7.00665 7.37114 7.43529 7.67924 7.78931 8.52825 8.93781 9.47231 10.99308 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023966 B = 0.006210 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.037394 B = 4507.490687 C = 5182.192569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.188 3.812 4 H 0.004 0.996 5 C -0.506 4.506 6 H 0.085 0.915 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.269 1.269 13 N -0.506 5.506 14 C 0.074 3.926 15 C -0.031 4.031 16 C -0.126 4.126 17 C -0.101 4.101 18 C -0.133 4.133 19 C -0.086 4.086 20 C -0.138 4.138 21 C 0.343 3.657 22 F -0.183 7.183 23 F -0.202 7.202 24 C 0.022 3.978 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -0.895 16.804 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.081 3.919 4 H 0.021 0.979 5 C -0.544 4.544 6 H 0.103 0.897 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.195 1.195 13 N -0.230 5.230 14 C -0.054 4.054 15 C -0.032 4.032 16 C -0.145 4.145 17 C -0.120 4.120 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.139 4.139 21 C 0.306 3.694 22 F -0.164 7.164 23 F -0.183 7.183 24 C -0.108 4.108 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.421 -0.855 16.530 16.557 hybrid contribution 1.320 -0.734 -0.135 1.517 sum 1.742 -1.589 16.395 16.563 Atomic orbital electron populations 1.21503 0.95025 0.98337 1.03672 1.21910 0.97858 0.97556 0.98665 1.19799 0.92933 0.90872 0.88291 0.97896 1.20844 1.32455 1.13585 0.87515 0.89662 1.24865 0.95495 0.96644 0.95720 1.69871 1.45094 1.40299 0.97828 0.86966 0.80922 0.84014 0.77011 1.20301 1.22370 1.19461 1.62128 1.59141 1.00017 1.01697 1.21249 0.98408 0.97935 0.87761 1.19734 0.95646 0.92466 0.95361 1.21043 1.01467 1.00178 0.91773 1.21145 0.97962 0.94587 0.98262 1.21029 1.01700 0.94949 0.97410 1.21097 0.97173 1.00072 0.92071 1.19976 1.04901 0.94826 0.94229 1.19438 0.78550 0.79369 0.92071 1.93050 1.38547 1.95683 1.89122 1.92973 1.84884 1.44564 1.95837 1.22969 0.95577 0.91668 1.00552 0.92216 0.91364 0.95748 0.93227 0.94631 0.92494 0.93359 0.88445 0.85491 0.85759 0.85735 0.85660 0.85775 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.45 37.16 0.35 -2.22 16 2 C -0.12 -2.52 4.69 -26.73 -0.13 -2.64 16 3 C 0.19 4.17 1.33 -68.86 -0.09 4.08 16 4 H 0.00 0.08 7.20 -51.93 -0.37 -0.29 16 5 C -0.51 -13.37 7.19 -34.44 -0.25 -13.61 16 6 H 0.09 2.50 7.09 -52.49 -0.37 2.13 16 7 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 9 Si 0.88 21.04 24.38 -169.99 -4.14 16.89 16 10 H -0.28 -6.46 6.86 56.52 0.39 -6.07 16 11 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.14 6.53 56.52 0.37 -5.78 16 13 N -0.51 -10.00 3.64 -229.60 -0.84 -10.84 16 14 C 0.07 1.20 4.63 -5.17 -0.02 1.18 16 15 C -0.03 -0.48 5.79 -104.63 -0.61 -1.08 16 16 C -0.13 -1.54 9.65 -39.48 -0.38 -1.92 16 17 C -0.10 -1.09 10.05 -39.65 -0.40 -1.49 16 18 C -0.13 -1.50 10.05 -39.65 -0.40 -1.90 16 19 C -0.09 -1.18 9.34 -39.49 -0.37 -1.55 16 20 C -0.14 -2.23 5.35 -104.60 -0.56 -2.79 16 21 C 0.34 6.20 2.08 -27.93 -0.06 6.14 16 22 F -0.18 -3.71 17.04 2.25 0.04 -3.67 16 23 F -0.20 -3.53 16.50 2.25 0.04 -3.49 16 24 C 0.02 0.42 4.85 -3.73 -0.02 0.40 16 25 H 0.06 1.18 7.41 -51.93 -0.38 0.80 16 26 H 0.07 1.55 7.44 -51.93 -0.39 1.17 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.09 3.26 -51.93 -0.17 0.92 16 29 H 0.04 0.63 6.49 -51.93 -0.34 0.29 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.10 1.49 6.43 -51.93 -0.33 1.15 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.60 7.85 -52.49 -0.41 1.19 16 37 H 0.12 2.68 6.20 -51.93 -0.32 2.36 16 38 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 LS Contribution 302.06 15.07 4.55 4.55 Total: -1.00 -29.11 302.06 -7.41 -36.51 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.80 Total: 1.05 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.02 Total: -15.43 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.06 Total: -36.41 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.08 Total: -7.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.14 Total: 16.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.11 -7.41 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.353 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds