Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47207 * 2 1 4 4 H 1.09004 * 109.46710 * 305.00634 * 3 2 1 5 5 C 1.50703 * 109.47092 * 185.01075 * 3 2 1 6 6 H 1.08005 * 119.99471 * 240.00164 * 5 3 2 7 7 C 1.37876 * 119.99991 * 59.99389 * 5 3 2 8 8 N 1.31512 * 120.00114 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99641 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47150 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46611 * 120.00221 * 9 7 5 12 12 H 1.48496 * 109.47062 * 240.00318 * 9 7 5 13 13 N 1.46900 * 109.47065 * 65.00535 * 3 2 1 14 14 C 1.46905 * 110.99647 * 193.94680 * 13 3 2 15 15 H 1.08995 * 110.26949 * 341.16028 * 14 13 3 16 16 C 1.54343 * 110.38345 * 219.02714 * 14 13 3 17 17 C 1.54184 * 102.46379 * 214.87770 * 16 14 13 18 18 C 1.51372 * 105.24969 * 26.04116 * 17 16 14 19 19 C 1.38209 * 109.75730 * 343.15775 * 18 17 16 20 20 C 1.38667 * 119.84987 * 179.76417 * 19 18 17 21 21 F 1.35105 * 119.89146 * 180.02562 * 20 19 18 22 22 C 1.38360 * 120.21720 * 0.02562 * 20 19 18 23 23 C 1.38155 * 119.93269 * 359.97438 * 22 20 19 24 24 C 1.38364 * 119.93770 * 359.97438 * 23 22 20 25 25 F 1.35099 * 119.89387 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47208 * 186.20868 * 1 2 3 27 27 H 1.09001 * 109.46774 * 306.20741 * 1 2 3 28 28 H 1.08997 * 109.46898 * 66.20401 * 1 2 3 29 29 H 1.09000 * 109.47240 * 240.00194 * 2 1 3 30 30 H 1.08997 * 109.47348 * 119.99692 * 2 1 3 31 31 H 0.96997 * 119.99535 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99496 * 69.99609 * 13 3 2 33 33 H 1.08998 * 110.82447 * 332.91100 * 16 14 13 34 34 H 1.09000 * 110.82508 * 96.26657 * 16 14 13 35 35 H 1.08998 * 109.98062 * 267.24262 * 17 16 14 36 36 H 1.08998 * 110.55771 * 145.13864 * 17 16 14 37 37 H 1.08001 * 120.03170 * 179.97438 * 22 20 19 38 38 H 1.08002 * 120.03114 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1241 6 1 4.1473 1.8889 0.6521 7 6 4.1431 0.8784 -1.2283 8 7 3.4059 0.3374 -2.1735 9 14 6.0048 0.8813 -1.3824 10 1 6.5987 1.5463 -0.1949 11 1 6.4968 -0.5175 -1.4636 12 1 6.3986 1.6167 -2.6108 13 7 1.6515 2.0993 1.2553 14 6 1.8249 3.5552 1.1633 15 1 2.4969 3.8042 0.3420 16 6 2.3728 4.1164 2.4926 17 6 1.6787 5.4900 2.5851 18 6 0.4024 5.3460 1.7841 19 6 0.4851 4.2324 0.9697 20 6 -0.5789 3.8999 0.1449 21 9 -0.4992 2.8112 -0.6512 22 6 -1.7219 4.6795 0.1345 23 6 -1.8046 5.7927 0.9486 24 6 -0.7444 6.1254 1.7730 25 9 -0.8260 7.2145 2.5684 26 1 -0.3633 -1.0216 0.1111 27 1 -0.3633 0.6071 0.8292 28 1 -0.3633 0.4146 -0.9403 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8289 -0.0604 -2.9505 32 1 2.1682 1.7222 2.0356 33 1 2.0820 3.4822 3.3301 34 1 3.4564 4.2260 2.4497 35 1 2.3151 6.2591 2.1473 36 1 1.4487 5.7336 3.6223 37 1 -2.5487 4.4180 -0.5093 38 1 -2.6959 6.4025 0.9414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = -74.334551 kcal Electronic energy + Delta-G solvation = -22715.807512 eV Core-core repulsion = 19193.422215 eV Total energy + Delta-G solvation = -3522.385297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -48.76585 -48.26783 -39.71359 -36.55032 -34.80439 -32.08068 -30.97450 -29.57915 -28.84154 -26.75177 -25.05778 -22.65998 -22.55343 -21.33361 -20.23616 -19.49500 -17.12076 -16.92204 -16.65945 -16.38875 -15.87372 -15.14219 -14.82074 -14.59759 -14.14228 -13.94920 -13.89412 -13.39966 -13.16974 -12.90259 -12.48047 -12.41913 -11.88697 -11.78741 -11.51699 -11.40089 -11.22073 -11.10906 -10.88681 -10.82198 -10.62136 -10.58807 -10.11023 -9.56832 -9.43593 -9.04930 -8.63782 -8.36531 -8.18852 -7.36583 -5.99975 -4.13944 1.18645 1.25006 3.24102 3.33109 3.34923 3.56339 4.29206 4.37786 4.44593 4.59234 4.70640 4.94861 5.11946 5.22251 5.25549 5.36180 5.53269 5.76906 5.85136 5.94018 5.99471 6.07140 6.11937 6.27792 6.42468 6.44992 6.46926 6.55173 6.61780 6.77969 7.03723 7.16843 7.28380 7.41942 7.62892 7.78909 8.04939 8.15225 8.31348 8.62196 8.98590 9.54028 10.99586 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.005792 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.292290 B = 4832.717939 C = 5574.331633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.212 3.788 4 H 0.044 0.956 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.129 3.871 15 H 0.084 0.916 16 C -0.124 4.124 17 C -0.072 4.072 18 C -0.111 4.111 19 C -0.072 4.072 20 C 0.126 3.874 21 F -0.115 7.115 22 C -0.140 4.140 23 C -0.134 4.134 24 C 0.087 3.913 25 F -0.144 7.144 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 9.288 6.864 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.105 3.895 4 H 0.062 0.938 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.308 5.308 14 C 0.019 3.981 15 H 0.102 0.898 16 C -0.162 4.162 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.074 4.074 20 C 0.106 3.894 21 F -0.093 7.093 22 C -0.159 4.159 23 C -0.153 4.153 24 C 0.068 3.932 25 F -0.122 7.122 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.043 9.180 6.515 13.835 hybrid contribution 1.910 0.025 -0.238 1.925 sum -6.134 9.205 6.276 12.718 Atomic orbital electron populations 1.21719 0.98778 0.98094 1.00706 1.21483 0.92331 0.99125 1.01526 1.19302 0.92475 0.91332 0.86410 0.93783 1.21940 0.92931 1.38376 1.05583 0.92858 1.24927 0.97759 0.95015 0.95735 1.69893 1.34662 1.38108 1.09346 0.86643 0.86267 0.77752 0.77925 1.19967 1.20985 1.21067 1.60935 1.61098 1.00361 1.08367 1.20881 0.89544 0.90597 0.97119 0.89825 1.22604 1.00350 0.95236 0.97991 1.20913 0.92077 0.98816 0.99163 1.20433 0.95342 0.95624 0.99866 1.20807 0.96711 0.95333 0.94543 1.17370 0.94045 0.85728 0.92246 1.91609 1.96280 1.50727 1.70716 1.20881 0.97831 0.95564 1.01598 1.20712 0.98491 0.98681 0.97419 1.17222 0.95078 0.86279 0.94639 1.91452 1.96696 1.51981 1.72117 0.96039 0.93266 0.94131 0.89145 0.95445 0.92933 0.85082 0.90345 0.90160 0.89931 0.90526 0.84056 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.98 37.16 0.33 -2.52 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.21 5.09 1.34 -68.86 -0.09 4.99 16 4 H 0.04 1.19 6.55 -51.93 -0.34 0.85 16 5 C -0.55 -14.28 7.88 -34.44 -0.27 -14.55 16 6 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -13.62 5.26 -101.07 -0.53 -14.15 16 14 C 0.13 2.34 3.02 -67.83 -0.20 2.13 16 15 H 0.08 1.73 7.23 -51.93 -0.38 1.36 16 16 C -0.12 -1.77 6.46 -25.41 -0.16 -1.93 16 17 C -0.07 -0.94 6.75 -26.93 -0.18 -1.12 16 18 C -0.11 -1.66 6.12 -104.14 -0.64 -2.30 16 19 C -0.07 -1.23 5.78 -104.15 -0.60 -1.83 16 20 C 0.13 2.16 7.27 -39.38 -0.29 1.88 16 21 F -0.12 -2.28 13.34 2.25 0.03 -2.25 16 22 C -0.14 -1.92 10.02 -39.57 -0.40 -2.31 16 23 C -0.13 -1.68 10.02 -39.57 -0.40 -2.08 16 24 C 0.09 1.22 7.30 -39.38 -0.29 0.93 16 25 F -0.14 -1.97 17.25 2.25 0.04 -1.93 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.01 7.58 -51.93 -0.39 0.61 16 28 H 0.04 0.87 7.36 -51.93 -0.38 0.49 16 29 H 0.09 2.41 5.95 -51.93 -0.31 2.11 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 32 H 0.33 6.44 7.97 -39.29 -0.31 6.13 16 33 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -27.73 313.13 -8.59 -36.32 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.03 Total: 5.25 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.43 Total: -19.63 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.09 Total: -38.20 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.07 Total: -4.18 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.73 -8.59 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.015 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds