Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 H 1.08994 * 109.47346 * 56.77555 * 3 2 1 5 5 C 1.50701 * 109.47032 * 176.77225 * 3 2 1 6 6 H 1.08000 * 120.00132 * 119.99464 * 5 3 2 7 7 C 1.37883 * 120.00091 * 299.99944 * 5 3 2 8 8 N 1.31520 * 119.99740 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 119.99949 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47335 * 90.00126 * 9 7 5 11 11 H 1.48503 * 109.46975 * 210.00068 * 9 7 5 12 12 H 1.48502 * 109.46951 * 329.99843 * 9 7 5 13 13 N 1.46894 * 109.47282 * 296.77160 * 3 2 1 14 14 C 1.46895 * 111.00177 * 152.32686 * 13 3 2 15 15 H 1.09000 * 110.26694 * 30.77009 * 14 13 3 16 16 C 1.54340 * 110.30692 * 268.69069 * 14 13 3 17 17 C 1.54344 * 102.39518 * 214.63416 * 16 14 13 18 18 C 1.51367 * 105.16860 * 26.34249 * 17 16 14 19 19 C 1.38206 * 109.76263 * 342.81666 * 18 17 16 20 20 C 1.38669 * 119.85340 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.89582 * 180.02562 * 20 19 18 22 22 C 1.38359 * 120.21223 * 359.97438 * 20 19 18 23 23 C 1.38166 * 119.93864 * 359.76772 * 22 20 19 24 24 C 1.38361 * 119.92919 * 0.50618 * 23 22 20 25 25 F 1.35099 * 119.89028 * 179.74799 * 24 23 22 26 26 H 1.08994 * 109.47476 * 173.45358 * 1 2 3 27 27 H 1.09003 * 109.46981 * 293.45335 * 1 2 3 28 28 H 1.09004 * 109.47026 * 53.44658 * 1 2 3 29 29 H 1.08996 * 109.47003 * 239.99573 * 2 1 3 30 30 H 1.09002 * 109.47069 * 119.99539 * 2 1 3 31 31 H 0.96996 * 119.99283 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00224 * 276.28509 * 13 3 2 33 33 H 1.08999 * 110.82723 * 96.40491 * 16 14 13 34 34 H 1.08999 * 110.99344 * 332.93459 * 16 14 13 35 35 H 1.09007 * 110.30371 * 267.42314 * 17 16 14 36 36 H 1.08993 * 110.30840 * 145.26893 * 17 16 14 37 37 H 1.08008 * 120.03280 * 180.02562 * 22 20 19 38 38 H 1.07994 * 120.03624 * 180.25410 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6302 1.9728 0.8596 5 6 3.5448 1.4432 0.0800 6 1 4.1274 1.8958 -0.7089 7 6 4.1781 0.8660 1.1603 8 7 5.4915 0.8663 1.2298 9 14 3.1707 0.0826 2.5243 10 1 2.9408 -1.3503 2.2094 11 1 3.9058 0.1951 3.8097 12 1 1.8647 0.7801 2.6382 13 7 1.6151 2.1121 -1.2365 14 6 1.4803 3.5604 -1.0313 15 1 2.1876 3.9021 -0.2756 16 6 0.0369 3.9098 -0.6108 17 6 -0.1815 5.2813 -1.2841 18 6 0.7491 5.2891 -2.4779 19 6 1.7038 4.3004 -2.3327 20 6 2.6675 4.1220 -3.3138 21 9 3.6008 3.1555 -3.1730 22 6 2.6756 4.9300 -4.4369 23 6 1.7179 5.9149 -4.5847 24 6 0.7591 6.0982 -3.6042 25 9 -0.1738 7.0648 -3.7471 26 1 -0.3634 -1.0209 -0.1172 27 1 -0.3633 0.4090 0.9428 28 1 -0.3633 0.6121 -0.8256 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9369 0.4605 1.9899 32 1 2.2516 1.9118 -1.9933 33 1 -0.0415 3.9934 0.4731 34 1 -0.6702 3.1736 -0.9930 35 1 0.0788 6.0860 -0.5965 36 1 -1.2165 5.3819 -1.6107 37 1 3.4273 4.7882 -5.1994 38 1 1.7203 6.5438 -5.4627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -67.839701 kcal Electronic energy + Delta-G solvation = -22518.845973 eV Core-core repulsion = 18996.742314 eV Total energy + Delta-G solvation = -3522.103659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -48.88974 -48.63076 -39.88401 -36.76236 -34.98981 -32.14612 -31.49132 -29.72329 -29.05940 -27.23403 -25.24238 -22.70134 -22.45032 -21.66279 -20.38845 -19.68292 -17.31823 -17.15533 -16.88022 -16.77293 -15.97575 -15.27065 -15.05017 -14.91823 -14.41926 -14.24217 -13.92253 -13.66141 -13.15448 -13.09019 -12.78854 -12.64257 -12.08069 -11.97987 -11.87754 -11.69953 -11.39862 -11.24660 -11.18325 -10.85869 -10.71158 -10.59530 -10.20756 -9.75528 -9.52658 -9.19894 -8.83549 -8.58277 -8.42171 -7.44939 -6.12501 -4.13859 1.00557 1.04738 3.25133 3.35058 3.36997 3.37226 4.14144 4.28399 4.36032 4.42556 4.50149 4.76464 4.98082 5.15740 5.20472 5.23269 5.44618 5.65219 5.69077 5.84958 5.91695 5.95269 6.01609 6.02289 6.08297 6.20371 6.24690 6.31492 6.33437 6.49947 6.66319 6.72083 6.83175 6.98289 7.07951 7.25787 7.54294 7.95825 8.31176 8.47577 8.91970 9.50253 11.00353 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.005563 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.420115 B = 5032.495176 C = 5630.715833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.033 0.967 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.672 5.672 14 C 0.130 3.870 15 H 0.078 0.922 16 C -0.106 4.106 17 C -0.076 4.076 18 C -0.100 4.100 19 C -0.092 4.092 20 C 0.111 3.889 21 F -0.123 7.123 22 C -0.132 4.132 23 C -0.131 4.131 24 C 0.092 3.908 25 F -0.140 7.140 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.341 0.659 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 8.893 -8.333 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.051 0.949 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.303 5.303 14 C 0.020 3.980 15 H 0.095 0.905 16 C -0.144 4.144 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.094 4.094 20 C 0.091 3.909 21 F -0.101 7.101 22 C -0.151 4.151 23 C -0.149 4.149 24 C 0.073 3.927 25 F -0.119 7.119 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.894 8.693 -8.114 16.127 hybrid contribution 0.804 -0.237 0.733 1.114 sum -10.090 8.456 -7.381 15.092 Atomic orbital electron populations 1.21752 0.97539 0.99669 1.01227 1.21806 0.93889 0.99239 1.00413 1.19641 0.94233 0.90681 0.88081 0.94911 1.21775 0.90226 1.38681 1.07923 0.90611 1.25006 0.94721 0.95319 0.97884 1.69924 1.07923 1.44729 1.30799 0.86832 0.80293 0.80005 0.80964 1.20465 1.22646 1.18966 1.61004 1.54797 1.05044 1.09501 1.21008 0.96655 0.89493 0.90878 0.90462 1.22418 0.96695 0.94922 1.00381 1.21052 0.97926 0.99279 0.93117 1.20445 0.98605 0.95579 0.95571 1.20808 0.94037 0.97574 0.96984 1.17404 0.88737 0.89523 0.95210 1.91577 1.62749 1.60137 1.95635 1.20874 1.00574 0.95996 0.97611 1.20780 0.94840 1.00004 0.99325 1.17254 0.90207 0.89639 0.95588 1.91470 1.63635 1.60898 1.95907 0.94821 0.94350 0.91608 0.92395 0.93747 0.92658 0.83952 0.90561 0.89640 0.89771 0.90323 0.83691 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.87 37.16 0.37 -2.22 16 2 C -0.12 -2.49 5.12 -26.73 -0.14 -2.63 16 3 C 0.18 4.16 1.43 -68.87 -0.10 4.06 16 4 H 0.03 0.77 6.87 -51.93 -0.36 0.42 16 5 C -0.55 -14.97 9.02 -34.44 -0.31 -15.28 16 6 H 0.08 2.28 7.95 -52.49 -0.42 1.86 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 9 Si 0.89 21.77 24.40 -169.99 -4.15 17.62 16 10 H -0.28 -6.68 6.84 56.52 0.39 -6.29 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.67 -13.34 5.36 -101.09 -0.54 -13.88 16 14 C 0.13 2.29 2.96 -67.83 -0.20 2.09 16 15 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 16 C -0.11 -1.52 6.77 -25.33 -0.17 -1.69 16 17 C -0.08 -0.95 6.75 -26.85 -0.18 -1.13 16 18 C -0.10 -1.42 6.12 -104.15 -0.64 -2.06 16 19 C -0.09 -1.49 5.73 -104.14 -0.60 -2.09 16 20 C 0.11 1.77 7.10 -39.38 -0.28 1.49 16 21 F -0.12 -2.28 15.59 2.25 0.04 -2.25 16 22 C -0.13 -1.65 10.02 -39.56 -0.40 -2.05 16 23 C -0.13 -1.49 10.02 -39.56 -0.40 -1.89 16 24 C 0.09 1.21 7.30 -39.38 -0.29 0.92 16 25 F -0.14 -1.80 17.25 2.25 0.04 -1.76 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.13 7.52 -51.93 -0.39 0.74 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.34 7.15 6.10 -39.29 -0.24 6.91 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -29.49 311.47 -7.53 -37.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.96 Total: 5.44 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.42 Total: -20.47 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.23 Total: -40.30 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.49 -7.53 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.816 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds