Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 H 1.09001 * 109.47132 * 54.84785 * 3 2 1 5 5 C 1.50697 * 109.47162 * 174.85052 * 3 2 1 6 6 H 1.07998 * 119.99565 * 114.65484 * 5 3 2 7 7 C 1.37871 * 119.99983 * 294.64383 * 5 3 2 8 8 N 1.31521 * 120.00380 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47450 * 60.00490 * 9 7 5 11 11 H 1.48500 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47251 * 300.00153 * 9 7 5 13 13 N 1.46896 * 109.46983 * 294.85290 * 3 2 1 14 14 C 1.48558 * 111.00280 * 183.89132 * 13 3 2 15 15 C 1.54382 * 104.59621 * 159.03884 * 14 13 3 16 16 H 1.09005 * 110.32009 * 217.25092 * 15 14 13 17 17 C 1.52998 * 110.41113 * 95.08751 * 15 14 13 18 18 O 1.42901 * 109.47341 * 69.30934 * 17 15 14 19 19 C 1.54254 * 105.05931 * 336.14592 * 15 14 13 20 20 H 1.09000 * 110.32577 * 118.89904 * 19 15 14 21 21 C 1.53007 * 110.32306 * 241.10527 * 19 15 14 22 22 F 1.39895 * 109.47001 * 177.09125 * 21 19 15 23 23 F 1.39902 * 109.46933 * 297.09407 * 21 19 15 24 24 F 1.39900 * 109.46883 * 57.08907 * 21 19 15 25 25 C 1.48567 * 110.99887 * 299.30936 * 13 3 2 26 26 H 1.09001 * 109.46780 * 175.29932 * 1 2 3 27 27 H 1.09000 * 109.47381 * 295.29899 * 1 2 3 28 28 H 1.08993 * 109.46941 * 55.30189 * 1 2 3 29 29 H 1.08998 * 109.47602 * 239.99597 * 2 1 3 30 30 H 1.09005 * 109.47097 * 119.99375 * 2 1 3 31 31 H 0.96996 * 119.99955 * 179.97438 * 8 7 5 32 32 H 1.09006 * 110.40694 * 277.81855 * 14 13 3 33 33 H 1.08996 * 110.41038 * 40.25461 * 14 13 3 34 34 H 1.08997 * 109.46825 * 189.30994 * 17 15 14 35 35 H 1.09000 * 109.46853 * 309.31099 * 17 15 14 36 36 H 0.96701 * 113.99986 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.40862 * 319.73505 * 25 13 3 38 38 H 1.08995 * 110.41211 * 82.17864 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9823 0.8403 5 6 3.5416 1.4444 0.1275 6 1 4.1520 1.8097 -0.6851 7 6 4.1360 0.9801 1.2816 8 7 3.3926 0.5351 2.2711 9 14 5.9973 0.9832 1.4400 10 1 6.5029 2.3734 1.3104 11 1 6.3821 0.4377 2.7664 12 1 6.5866 0.1403 0.3687 13 7 1.6544 2.0982 -1.2567 14 6 2.2128 3.4727 -1.3333 15 6 2.2054 3.8123 -2.8393 16 1 3.0905 4.3923 -3.1009 17 6 0.9371 4.5854 -3.2057 18 8 0.9898 5.8900 -2.6248 19 6 2.2275 2.4475 -3.5579 20 1 1.3338 2.3277 -4.1704 21 6 3.4850 2.3214 -4.4204 22 9 3.5202 1.0536 -5.0109 23 9 3.4656 3.3008 -5.4192 24 9 4.6190 2.4945 -3.6196 25 6 2.2463 1.3981 -2.4258 26 1 -0.3633 -1.0242 -0.0842 27 1 -0.3634 0.4392 0.9291 28 1 -0.3633 0.5850 -0.8449 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8109 0.2081 3.0829 32 1 1.5816 4.1706 -0.7831 33 1 3.2308 3.4917 -0.9442 34 1 0.8655 4.6731 -4.2898 35 1 0.0648 4.0535 -2.8258 36 1 0.2158 6.4372 -2.8160 37 1 3.2696 1.0925 -2.2078 38 1 1.6404 0.5341 -2.6983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = -208.573642 kcal Electronic energy + Delta-G solvation = -24281.650666 eV Core-core repulsion = 20322.675101 eV Total energy + Delta-G solvation = -3958.975565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -49.89004 -47.40299 -47.31454 -39.05640 -36.53211 -34.46498 -31.87478 -30.58921 -29.51641 -26.60745 -25.41115 -24.23764 -22.65901 -21.33668 -19.96930 -19.15810 -18.16921 -17.95392 -17.64033 -16.90039 -16.32621 -15.22683 -14.92490 -14.59228 -14.27983 -14.07746 -13.89461 -13.79026 -13.62204 -13.49974 -13.35559 -13.03234 -12.75950 -12.62246 -11.97563 -11.73193 -11.53643 -11.28084 -11.13427 -10.95052 -10.81636 -10.76073 -10.62176 -10.37712 -9.97294 -9.87181 -9.72204 -9.53123 -9.18334 -8.40117 -7.37714 -6.04487 -4.15598 2.95897 3.28592 3.33210 3.37280 3.92061 4.04561 4.24013 4.38662 4.52362 4.96188 5.01800 5.13274 5.23245 5.25931 5.42376 5.53562 5.61158 5.92659 6.12183 6.23322 6.32747 6.39394 6.48633 6.58381 6.61455 6.78864 6.96249 7.09250 7.17031 7.49428 7.66324 7.70259 7.82305 8.01900 8.08821 8.33129 8.92937 9.51775 10.97621 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.007248 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.363884 B = 3862.102335 C = 4380.615310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.048 0.952 5 C -0.548 4.548 6 H 0.060 0.940 7 C 0.072 3.928 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.503 5.503 14 C 0.045 3.955 15 C -0.086 4.086 16 H 0.082 0.918 17 C 0.091 3.909 18 O -0.570 6.570 19 C -0.136 4.136 20 H 0.115 0.885 21 C 0.455 3.545 22 F -0.185 7.185 23 F -0.190 7.190 24 F -0.176 7.176 25 C 0.042 3.958 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.376 0.624 37 H 0.073 0.927 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 4.678 -11.683 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.066 0.934 5 C -0.587 4.587 6 H 0.078 0.922 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.227 5.227 14 C -0.083 4.083 15 C -0.105 4.105 16 H 0.100 0.900 17 C 0.013 3.987 18 O -0.374 6.374 19 C -0.157 4.157 20 H 0.133 0.867 21 C 0.401 3.599 22 F -0.166 7.166 23 F -0.171 7.171 24 F -0.157 7.157 25 C -0.086 4.086 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.222 0.778 37 H 0.091 0.909 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.938 4.351 -11.272 13.052 hybrid contribution 1.703 0.049 -0.233 1.719 sum -3.235 4.400 -11.505 12.735 Atomic orbital electron populations 1.21737 0.98650 0.98657 1.00765 1.21556 0.92448 0.99069 1.01533 1.19416 0.93472 0.91221 0.86239 0.93429 1.21633 0.92552 1.43098 1.01421 0.92203 1.24880 0.97785 0.94792 0.95676 1.69898 1.34994 1.41635 1.05586 0.86768 0.86205 0.78524 0.77253 1.20205 1.21239 1.20241 1.65871 1.51970 1.01244 1.03642 1.23025 1.01161 0.92159 0.91960 1.21876 0.98464 0.92379 0.97784 0.89966 1.22146 0.97696 0.83432 0.95434 1.86495 1.46878 1.26375 1.77691 1.23282 0.93920 1.00125 0.98333 0.86722 1.20616 0.86989 0.73228 0.79083 1.93164 1.96945 1.41260 1.85237 1.93149 1.96905 1.63322 1.63766 1.93211 1.54296 1.95014 1.73196 1.23030 1.01590 0.94758 0.89254 0.95482 0.94050 0.93163 0.94854 0.89817 0.92771 0.90358 0.91370 0.94220 0.92323 0.77768 0.90933 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.86 37.16 0.37 -2.34 16 2 C -0.11 -2.42 5.15 -26.73 -0.14 -2.56 16 3 C 0.20 4.77 1.80 -68.87 -0.12 4.65 16 4 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 5 C -0.55 -14.14 6.42 -34.44 -0.22 -14.36 16 6 H 0.06 1.56 5.70 -52.49 -0.30 1.26 16 7 C 0.07 1.92 5.30 -17.82 -0.09 1.83 16 8 N -0.88 -24.40 11.71 55.43 0.65 -23.75 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.50 -9.92 4.81 -223.40 -1.08 -11.00 16 14 C 0.05 0.86 5.77 -2.18 -0.01 0.84 16 15 C -0.09 -1.33 2.62 -89.24 -0.23 -1.56 16 16 H 0.08 1.33 7.39 -51.93 -0.38 0.94 16 17 C 0.09 1.16 6.14 37.16 0.23 1.38 16 18 O -0.57 -7.36 13.32 -35.23 -0.47 -7.83 16 19 C -0.14 -2.03 2.72 -89.24 -0.24 -2.27 16 20 H 0.11 1.42 7.71 -51.93 -0.40 1.02 16 21 C 0.46 7.00 2.51 37.16 0.09 7.09 16 22 F -0.18 -2.84 17.10 2.25 0.04 -2.80 16 23 F -0.19 -2.75 17.06 2.25 0.04 -2.72 16 24 F -0.18 -3.11 16.04 2.25 0.04 -3.08 16 25 C 0.04 0.76 4.44 -2.18 -0.01 0.75 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.92 7.63 -51.93 -0.40 0.52 16 29 H 0.03 0.73 6.70 -51.93 -0.35 0.38 16 30 H 0.08 2.13 6.41 -51.93 -0.33 1.80 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.50 7.62 -51.93 -0.40 1.10 16 33 H 0.07 1.48 6.04 -51.93 -0.31 1.16 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.38 2.93 9.12 45.56 0.42 3.34 16 37 H 0.07 1.50 5.26 -51.93 -0.27 1.23 16 38 H 0.08 1.39 7.55 -51.93 -0.39 0.99 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -27.90 309.78 -5.89 -33.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.37 Total: 3.24 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.39 Total: -6.56 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.43 Total: -34.75 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.47 Total: -7.83 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 0.11 Total: -8.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.90 -5.89 -33.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.780 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds