Wall clock time and date at job start Tue Mar 31 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.49446 * 2 1 4 4 C 1.53234 * 109.47990 * 120.03849 * 2 1 3 5 5 C 1.51267 * 108.53793 * 65.35149 * 4 2 1 6 6 O 1.20759 * 120.84967 * 231.36348 * 5 4 2 7 7 C 1.51303 * 118.30706 * 51.34591 * 5 4 2 8 8 C 1.53229 * 108.51942 * 308.66024 * 7 5 4 9 9 C 1.52956 * 109.41888 * 54.62445 * 8 7 5 10 10 H 1.09000 * 109.41218 * 56.49784 * 9 8 7 11 11 C 1.50696 * 109.41547 * 176.35921 * 9 8 7 12 12 O 1.21281 * 120.00035 * 25.10467 * 11 9 8 13 13 N 1.34773 * 119.99987 * 205.10173 * 11 9 8 14 14 C 1.47071 * 136.05726 * 4.69099 * 13 11 9 15 15 C 1.53754 * 87.89011 * 152.95594 * 14 13 11 16 16 O 1.42897 * 114.39376 * 272.67615 * 15 14 13 17 17 C 1.50697 * 114.08675 * 139.77695 * 15 14 13 18 18 H 1.08002 * 119.99809 * 266.55878 * 17 15 14 19 19 C 1.37877 * 120.00072 * 86.56469 * 17 15 14 20 20 N 1.31518 * 120.00122 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99929 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46892 * 90.00108 * 21 19 17 23 23 H 1.48506 * 109.46962 * 209.99578 * 21 19 17 24 24 H 1.48491 * 109.47266 * 329.99819 * 21 19 17 25 25 C 1.47064 * 136.05961 * 185.04950 * 13 11 9 26 26 H 1.09000 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46791 * 300.02682 * 1 2 3 28 28 H 1.08998 * 109.47109 * 60.02973 * 1 2 3 29 29 H 1.09001 * 109.62189 * 185.06781 * 4 2 1 30 30 H 1.08991 * 109.62796 * 305.44136 * 4 2 1 31 31 H 1.08998 * 109.64066 * 188.94177 * 7 5 4 32 32 H 1.08996 * 109.62250 * 68.36593 * 7 5 4 33 33 H 1.08998 * 109.48060 * 294.63350 * 8 7 5 34 34 H 1.09000 * 109.47893 * 174.60739 * 8 7 5 35 35 H 1.09002 * 113.46516 * 267.68929 * 14 13 11 36 36 H 1.09005 * 113.46950 * 38.12633 * 14 13 11 37 37 H 0.96703 * 114.00362 * 273.58068 * 16 15 14 38 38 H 0.96993 * 120.00091 * 179.97438 * 20 19 17 39 39 H 1.09007 * 113.46782 * 321.87442 * 25 13 11 40 40 H 1.09001 * 113.46945 * 92.25188 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7232 1.2506 5 6 1.6375 -2.1784 1.1633 6 8 1.0640 -2.7180 2.0788 7 6 1.9704 -2.9406 -0.1006 8 6 1.4620 -2.1368 -1.3020 9 6 2.0402 -0.7217 -1.2485 10 1 3.1283 -0.7760 -1.2164 11 6 1.6126 0.0408 -2.4759 12 8 0.5999 -0.2748 -3.0638 13 7 2.3557 1.0737 -2.9204 14 6 3.6405 1.6886 -2.5545 15 6 3.7686 2.1544 -4.0142 16 8 4.3788 1.2011 -4.8864 17 6 4.3214 3.5477 -4.1689 18 1 3.6496 4.3898 -4.2453 19 6 5.6849 3.7473 -4.2132 20 7 6.5031 2.7219 -4.1199 21 14 6.3702 5.4744 -4.4058 22 1 6.5757 6.0777 -3.0645 23 1 7.6677 5.4147 -5.1256 24 1 5.4122 6.3036 -5.1801 25 6 2.2355 2.0857 -3.9807 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5143 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 3.1273 -0.6467 1.2995 30 1 1.6019 -0.2713 2.1399 31 1 1.4832 -3.9154 -0.0796 32 1 3.0501 -3.0695 -0.1768 33 1 0.3736 -2.0863 -1.2712 34 1 1.7773 -2.6237 -2.2248 35 1 3.5422 2.5094 -1.8440 36 1 4.4002 0.9644 -2.2601 37 1 5.3446 1.2470 -4.9053 38 1 7.4623 2.8623 -4.1514 39 1 1.7980 1.6998 -4.9015 40 1 1.7658 3.0108 -3.6465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322433739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:54 Heat of formation + Delta-G solvation = -100.308308 kcal Electronic energy + Delta-G solvation = -22966.159676 eV Core-core repulsion = 19553.735588 eV Total energy + Delta-G solvation = -3412.424088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63240 -39.40625 -37.89858 -36.18259 -34.06207 -32.24726 -32.19051 -29.91873 -28.51123 -27.16559 -25.31268 -25.11911 -22.93367 -21.75322 -20.14941 -18.71753 -18.09379 -17.44520 -16.49247 -16.26471 -15.51407 -15.41194 -15.25648 -15.07361 -14.50933 -14.21290 -14.03628 -13.71747 -13.29973 -12.87668 -12.70901 -12.56304 -12.44868 -12.01823 -11.96611 -11.77239 -11.61085 -11.50281 -11.22228 -11.08970 -11.03750 -10.83720 -10.55383 -10.51032 -10.30552 -9.60772 -9.48560 -9.17961 -8.82892 -8.43669 -7.88972 -6.45733 -4.56080 1.83627 3.10020 3.10565 3.19178 3.22268 3.48426 3.97875 4.13553 4.52400 4.53004 4.69988 4.78701 4.86655 5.03000 5.09325 5.22886 5.31408 5.40019 5.50026 5.53570 5.63259 5.68940 5.80006 5.82975 5.89714 5.99879 6.10429 6.12057 6.16777 6.34426 6.36716 6.45573 6.58752 6.62943 7.05392 7.36309 7.57676 7.75103 8.45521 8.49354 8.71882 9.15677 9.43601 10.60917 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.004317 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.680063 B = 6484.778770 C = 6730.939992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.071 4.071 3 H 0.088 0.912 4 C -0.164 4.164 5 C 0.366 3.634 6 O -0.464 6.464 7 C -0.170 4.170 8 C -0.098 4.098 9 C -0.102 4.102 10 H 0.095 0.905 11 C 0.542 3.458 12 O -0.560 6.560 13 N -0.633 5.633 14 C 0.071 3.929 15 C 0.240 3.760 16 O -0.571 6.571 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.105 3.895 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.274 0.726 39 H 0.066 0.934 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 -4.640 8.178 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 H 0.106 0.894 4 C -0.202 4.202 5 C 0.242 3.758 6 O -0.338 6.338 7 C -0.207 4.207 8 C -0.135 4.135 9 C -0.124 4.124 10 H 0.113 0.887 11 C 0.332 3.668 12 O -0.440 6.440 13 N -0.366 5.366 14 C -0.052 4.052 15 C 0.198 3.802 16 O -0.384 6.384 17 C -0.572 4.572 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.017 4.017 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.987 -5.487 8.312 11.138 hybrid contribution 1.238 1.108 0.067 1.663 sum -3.749 -4.379 8.379 10.170 Atomic orbital electron populations 1.21994 0.94265 1.02399 1.02546 1.20966 0.96794 0.99806 0.91470 0.89350 1.22380 1.03576 0.94299 0.99931 1.24900 0.73691 0.90366 0.86838 1.90392 1.31807 1.71738 1.39826 1.22355 1.03877 1.00144 0.94362 1.21405 1.02150 0.92802 0.97191 1.21302 1.02278 0.95442 0.93333 0.88704 1.19796 0.82459 0.79906 0.84681 1.90635 1.26194 1.68095 1.59121 1.49766 1.23436 1.28182 1.35216 1.24271 0.82233 0.95391 1.03295 1.19569 0.87801 0.87917 0.84883 1.86051 1.28076 1.58475 1.65778 1.21443 0.92174 0.92077 1.51535 0.90939 1.25069 0.96723 0.98188 0.92995 1.69257 1.04204 1.30491 1.49967 0.86318 0.78475 0.83185 0.78491 1.20275 1.20863 1.19498 1.23321 0.99101 0.89363 0.89914 0.92363 0.92397 0.91360 0.87975 0.88972 0.89099 0.88143 0.89952 0.90196 0.90130 0.91776 0.74977 0.91549 0.91595 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.35 37.16 0.31 -1.65 16 2 C -0.07 -0.86 2.67 -90.51 -0.24 -1.10 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.16 -1.68 5.65 -27.48 -0.16 -1.84 16 5 C 0.37 4.32 5.75 -28.46 -0.16 4.15 16 6 O -0.46 -6.88 17.89 6.00 0.11 -6.78 16 7 C -0.17 -1.76 6.17 -27.47 -0.17 -1.93 16 8 C -0.10 -1.23 4.41 -26.64 -0.12 -1.35 16 9 C -0.10 -1.42 2.05 -91.81 -0.19 -1.61 16 10 H 0.09 1.24 8.00 -51.93 -0.42 0.83 16 11 C 0.54 10.05 6.31 -10.99 -0.07 9.98 16 12 O -0.56 -11.97 16.36 5.56 0.09 -11.87 16 13 N -0.63 -12.47 3.69 -185.04 -0.68 -13.15 16 14 C 0.07 1.41 7.75 -8.38 -0.06 1.35 16 15 C 0.24 5.51 1.59 -91.12 -0.14 5.36 16 16 O -0.57 -14.26 13.55 -35.23 -0.48 -14.74 16 17 C -0.53 -12.83 8.69 -34.44 -0.30 -13.13 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 20 N -0.90 -21.90 11.01 55.43 0.61 -21.29 16 21 Si 0.91 18.73 29.54 -169.99 -5.02 13.71 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C 0.11 2.20 8.02 -8.51 -0.07 2.13 16 26 H 0.06 0.74 5.60 -51.93 -0.29 0.45 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.00 6.92 -51.93 -0.36 0.64 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.11 6.04 -51.93 -0.31 0.80 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 36 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 37 H 0.39 9.92 6.33 45.56 0.29 10.21 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -28.22 324.64 -7.23 -35.44 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.28 Total: 11.75 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.47 Total: 2.03 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.07 Total: -34.44 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.28 Total: -33.39 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.22 -7.23 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.864 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds