Wall clock time and date at job start Tue Mar 31 2020 07:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.49446 * 2 1 4 4 C 1.53234 * 109.47990 * 120.03849 * 2 1 3 5 5 C 1.51267 * 108.53793 * 65.35149 * 4 2 1 6 6 O 1.20759 * 120.84967 * 231.36348 * 5 4 2 7 7 C 1.51303 * 118.30706 * 51.34591 * 5 4 2 8 8 C 1.53229 * 108.51942 * 308.66024 * 7 5 4 9 9 C 1.52956 * 109.41888 * 54.62445 * 8 7 5 10 10 H 1.09000 * 109.41218 * 56.49784 * 9 8 7 11 11 C 1.50696 * 109.41547 * 176.35921 * 9 8 7 12 12 O 1.21281 * 120.00035 * 25.10467 * 11 9 8 13 13 N 1.34773 * 119.99987 * 205.10173 * 11 9 8 14 14 C 1.47071 * 136.05726 * 4.69099 * 13 11 9 15 15 C 1.53754 * 87.89011 * 152.95594 * 14 13 11 16 16 O 1.42897 * 114.39376 * 272.67615 * 15 14 13 17 17 C 1.50697 * 114.08675 * 139.77695 * 15 14 13 18 18 H 1.08002 * 119.99809 * 266.55878 * 17 15 14 19 19 C 1.37877 * 120.00072 * 86.56469 * 17 15 14 20 20 N 1.31518 * 120.00122 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99929 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46892 * 90.00108 * 21 19 17 23 23 H 1.48506 * 109.46962 * 209.99578 * 21 19 17 24 24 H 1.48491 * 109.47266 * 329.99819 * 21 19 17 25 25 C 1.47064 * 136.05961 * 185.04950 * 13 11 9 26 26 H 1.09000 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46791 * 300.02682 * 1 2 3 28 28 H 1.08998 * 109.47109 * 60.02973 * 1 2 3 29 29 H 1.09001 * 109.62189 * 185.06781 * 4 2 1 30 30 H 1.08991 * 109.62796 * 305.44136 * 4 2 1 31 31 H 1.08998 * 109.64066 * 188.94177 * 7 5 4 32 32 H 1.08996 * 109.62250 * 68.36593 * 7 5 4 33 33 H 1.08998 * 109.48060 * 294.63350 * 8 7 5 34 34 H 1.09000 * 109.47893 * 174.60739 * 8 7 5 35 35 H 1.09002 * 113.46516 * 267.68929 * 14 13 11 36 36 H 1.09005 * 113.46950 * 38.12633 * 14 13 11 37 37 H 0.96703 * 114.00362 * 273.58068 * 16 15 14 38 38 H 0.96993 * 120.00091 * 179.97438 * 20 19 17 39 39 H 1.09007 * 113.46782 * 321.87442 * 25 13 11 40 40 H 1.09001 * 113.46945 * 92.25188 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7232 1.2506 5 6 1.6375 -2.1784 1.1633 6 8 1.0640 -2.7180 2.0788 7 6 1.9704 -2.9406 -0.1006 8 6 1.4620 -2.1368 -1.3020 9 6 2.0402 -0.7217 -1.2485 10 1 3.1283 -0.7760 -1.2164 11 6 1.6126 0.0408 -2.4759 12 8 0.5999 -0.2748 -3.0638 13 7 2.3557 1.0737 -2.9204 14 6 3.6405 1.6886 -2.5545 15 6 3.7686 2.1544 -4.0142 16 8 4.3788 1.2011 -4.8864 17 6 4.3214 3.5477 -4.1689 18 1 3.6496 4.3898 -4.2453 19 6 5.6849 3.7473 -4.2132 20 7 6.5031 2.7219 -4.1199 21 14 6.3702 5.4744 -4.4058 22 1 6.5757 6.0777 -3.0645 23 1 7.6677 5.4147 -5.1256 24 1 5.4122 6.3036 -5.1801 25 6 2.2355 2.0857 -3.9807 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5143 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 3.1273 -0.6467 1.2995 30 1 1.6019 -0.2713 2.1399 31 1 1.4832 -3.9154 -0.0796 32 1 3.0501 -3.0695 -0.1768 33 1 0.3736 -2.0863 -1.2712 34 1 1.7773 -2.6237 -2.2248 35 1 3.5422 2.5094 -1.8440 36 1 4.4002 0.9644 -2.2601 37 1 5.3446 1.2470 -4.9053 38 1 7.4623 2.8623 -4.1514 39 1 1.7980 1.6998 -4.9015 40 1 1.7658 3.0108 -3.6465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322433739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:53 Heat of formation + Delta-G solvation = -118.989380 kcal Electronic energy + Delta-G solvation = -22966.969748 eV Core-core repulsion = 19553.735588 eV Total energy + Delta-G solvation = -3413.234160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83816 -40.76420 -39.33726 -37.43446 -35.85890 -34.09947 -33.13146 -31.23462 -29.82189 -28.33572 -26.96491 -26.72278 -23.95504 -22.92164 -21.64166 -20.04106 -19.46088 -19.03553 -17.92097 -17.49879 -17.06055 -16.71503 -16.48619 -16.17920 -15.97406 -15.64400 -15.41607 -14.82980 -14.71274 -14.32806 -14.05184 -13.96248 -13.58003 -13.49293 -13.38113 -13.05403 -12.77829 -12.75544 -12.68847 -12.48895 -12.23654 -12.21195 -12.13348 -11.84676 -11.51833 -11.28891 -10.82200 -10.58236 -10.42510 -10.16671 -9.52892 -8.25397 -6.41858 0.91957 1.48444 1.52933 1.61029 1.65731 2.00110 2.42763 2.97199 3.10141 3.40343 3.54253 3.59822 3.77983 3.92445 4.06870 4.14231 4.17820 4.27540 4.33529 4.43372 4.49754 4.60306 4.65067 4.73784 4.76871 4.84340 4.86232 4.94797 4.96864 4.99447 5.07019 5.11153 5.19318 5.28208 5.35282 5.75541 5.94101 6.46353 6.63860 6.94685 7.19765 7.32593 7.52214 8.80574 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.004317 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.680063 B = 6484.778770 C = 6730.939992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 H 0.093 0.907 4 C -0.156 4.156 5 C 0.369 3.631 6 O -0.497 6.497 7 C -0.162 4.162 8 C -0.094 4.094 9 C -0.096 4.096 10 H 0.111 0.889 11 C 0.537 3.463 12 O -0.594 6.594 13 N -0.636 5.636 14 C 0.089 3.911 15 C 0.216 3.784 16 O -0.587 6.587 17 C -0.552 4.552 18 H 0.073 0.927 19 C 0.036 3.964 20 N -0.916 5.916 21 Si 0.967 3.033 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.389 0.611 38 H 0.276 0.724 39 H 0.047 0.953 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -4.268 9.767 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 H 0.111 0.889 4 C -0.194 4.194 5 C 0.247 3.753 6 O -0.373 6.373 7 C -0.199 4.199 8 C -0.132 4.132 9 C -0.117 4.117 10 H 0.129 0.871 11 C 0.328 3.672 12 O -0.476 6.476 13 N -0.368 5.368 14 C -0.033 4.033 15 C 0.175 3.825 16 O -0.400 6.400 17 C -0.590 4.590 18 H 0.091 0.909 19 C -0.165 4.165 20 N -0.557 5.557 21 Si 0.792 3.208 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.019 4.019 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.147 0.853 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.094 -5.116 9.907 11.878 hybrid contribution 0.909 0.981 -0.510 1.432 sum -3.185 -4.135 9.397 10.749 Atomic orbital electron populations 1.21968 0.94995 1.01964 1.02064 1.20945 0.96129 1.00106 0.91329 0.88871 1.22368 1.05230 0.92791 0.98994 1.25216 0.72429 0.91049 0.86569 1.90396 1.33300 1.72535 1.41084 1.22332 1.05478 0.99729 0.92402 1.21342 1.01319 0.92388 0.98123 1.21369 1.03204 0.95446 0.91637 0.87143 1.20689 0.81732 0.79271 0.85492 1.90617 1.27696 1.68777 1.60475 1.49821 1.23637 1.28442 1.34919 1.24025 0.82147 0.95748 1.01415 1.19869 0.88559 0.87514 0.86547 1.86036 1.27819 1.59250 1.66888 1.21666 0.92665 0.92606 1.52091 0.90915 1.25702 0.96900 1.01207 0.92689 1.69312 1.04417 1.31804 1.50202 0.85412 0.77445 0.79425 0.78499 1.19504 1.21054 1.19696 1.23318 0.98007 0.90606 0.90015 0.92828 0.90706 0.93940 0.85334 0.88005 0.88486 0.85568 0.91366 0.90774 0.88555 0.91419 0.75483 0.91353 0.93396 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.35 71.98 0.60 -3.08 16 2 C -0.07 -1.43 2.67 -10.73 -0.03 -1.46 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.16 -2.68 5.65 30.11 0.17 -2.51 16 5 C 0.37 7.77 5.75 29.47 0.17 7.94 16 6 O -0.50 -13.84 17.89 -1.45 -0.03 -13.87 16 7 C -0.16 -2.94 6.17 30.12 0.19 -2.76 16 8 C -0.09 -2.23 4.41 30.66 0.14 -2.09 16 9 C -0.10 -2.47 2.05 -11.57 -0.02 -2.50 16 10 H 0.11 2.55 8.00 -2.39 -0.02 2.54 16 11 C 0.54 19.58 6.31 87.66 0.55 20.13 16 12 O -0.59 -25.62 16.36 -3.03 -0.05 -25.67 16 13 N -0.64 -24.58 3.69 -858.23 -3.16 -27.75 16 14 C 0.09 3.42 7.75 83.26 0.65 4.07 16 15 C 0.22 9.86 1.59 -11.12 -0.02 9.84 16 16 O -0.59 -29.59 13.55 -148.98 -2.02 -31.61 16 17 C -0.55 -26.21 8.69 25.60 0.22 -25.99 16 18 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 19 C 0.04 1.66 5.40 84.65 0.46 2.12 16 20 N -0.92 -44.04 11.01 21.45 0.24 -43.81 16 21 Si 0.97 37.58 29.54 68.60 2.03 39.61 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 25 C 0.10 4.33 8.02 83.18 0.67 5.00 16 26 H 0.05 1.33 5.60 -2.39 -0.01 1.31 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.23 6.92 -2.39 -0.02 1.22 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.82 6.04 -2.39 -0.01 1.80 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 3.38 8.10 -2.39 -0.02 3.36 16 36 H 0.07 2.53 8.12 -2.38 -0.02 2.51 16 37 H 0.39 19.84 6.33 -74.06 -0.47 19.37 16 38 H 0.28 12.60 8.31 -92.71 -0.77 11.83 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.10 3.84 8.10 -2.39 -0.02 3.82 16 Total: -1.00 -60.32 324.64 1.32 -59.00 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.58 Total: 35.39 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 3.74 Total: 8.71 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -2.93 Total: -71.55 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -2.09 Total: -71.15 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -60.32 1.32 -59.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.992 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds