Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49430 * 2 1 4 4 C 1.53228 * 109.48319 * 239.96266 * 2 1 3 5 5 C 1.51266 * 108.53480 * 294.64588 * 4 2 1 6 6 O 1.20761 * 120.84744 * 128.63441 * 5 4 2 7 7 C 1.51266 * 118.30476 * 308.65429 * 5 4 2 8 8 C 1.53226 * 108.53539 * 51.34977 * 7 5 4 9 9 C 1.52960 * 109.40113 * 305.37019 * 8 7 5 10 10 H 1.09001 * 109.41746 * 303.56578 * 9 8 7 11 11 C 1.50704 * 109.41085 * 183.70575 * 9 8 7 12 12 O 1.21283 * 120.00239 * 334.90925 * 11 9 8 13 13 N 1.34778 * 119.99948 * 154.90586 * 11 9 8 14 14 C 1.47579 * 134.49354 * 174.94471 * 13 11 9 15 15 C 1.53939 * 86.11796 * 155.36217 * 14 13 11 16 16 O 1.42902 * 113.74321 * 269.15671 * 15 14 13 17 17 C 1.50702 * 113.74495 * 137.95127 * 15 14 13 18 18 H 1.08000 * 119.99827 * 1.93229 * 17 15 14 19 19 C 1.37874 * 120.00043 * 182.19916 * 17 15 14 20 20 N 1.31512 * 120.00382 * 359.72932 * 19 17 15 21 21 Si 1.86807 * 119.99871 * 179.72800 * 19 17 15 22 22 H 1.48504 * 109.46816 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47408 * 120.00108 * 21 19 17 24 24 H 1.48503 * 109.47092 * 240.00448 * 21 19 17 25 25 C 1.47812 * 134.45564 * 354.81929 * 13 11 9 26 26 H 1.09003 * 109.47318 * 299.96893 * 1 2 3 27 27 H 1.09002 * 109.47324 * 59.97040 * 1 2 3 28 28 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.62021 * 174.93544 * 4 2 1 30 30 H 1.08997 * 109.78662 * 54.45896 * 4 2 1 31 31 H 1.09006 * 109.62624 * 291.63084 * 7 5 4 32 32 H 1.09006 * 109.62641 * 171.06704 * 7 5 4 33 33 H 1.09007 * 109.48285 * 185.39499 * 8 7 5 34 34 H 1.08995 * 109.48806 * 65.35341 * 8 7 5 35 35 H 1.08994 * 113.76695 * 41.06142 * 14 13 11 36 36 H 1.09006 * 113.87182 * 269.67909 * 14 13 11 37 37 H 0.96702 * 114.00273 * 178.07400 * 16 15 14 38 38 H 0.96999 * 120.00271 * 179.97438 * 20 19 17 39 39 H 1.08999 * 113.76910 * 90.37666 * 25 13 11 40 40 H 1.08998 * 113.83690 * 318.91243 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7231 -1.2505 5 6 1.6376 -2.1783 -1.1631 6 8 1.0641 -2.7179 -2.0787 7 6 1.9704 -2.9403 0.1005 8 6 1.4619 -2.1368 1.3020 9 6 2.0401 -0.7217 1.2484 10 1 3.1282 -0.7759 1.2151 11 6 1.6139 0.0403 2.4768 12 8 0.6019 -0.2758 3.0658 13 7 2.3574 1.0730 2.9209 14 6 2.2025 2.0721 3.9960 15 6 3.7379 2.1809 3.9730 16 8 4.3918 1.2842 4.8733 17 6 4.2476 3.5951 4.0788 18 1 3.5515 4.4130 4.1923 19 6 5.6024 3.8454 4.0253 20 7 6.4502 2.8495 3.8872 21 14 6.2338 5.5992 4.1488 22 1 5.0857 6.5292 4.2984 23 1 7.1266 5.7219 5.3290 24 1 6.9909 5.9406 2.9177 25 6 3.6566 1.6579 2.5274 26 1 -0.3634 0.5134 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1273 -0.6466 -1.2993 30 1 1.6021 -0.2743 -2.1415 31 1 3.0502 -3.0691 0.1767 32 1 1.4833 -3.9152 0.0793 33 1 1.7774 -2.6237 2.2248 34 1 0.3735 -2.0862 1.2712 35 1 1.8051 1.6608 4.9239 36 1 1.6927 2.9829 3.6818 37 1 5.3572 1.3286 4.8407 38 1 7.4033 3.0256 3.8492 39 1 3.5750 2.4461 1.7790 40 1 4.4180 0.9166 2.2849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322433746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = -104.712557 kcal Electronic energy + Delta-G solvation = -22991.165395 eV Core-core repulsion = 19578.550325 eV Total energy + Delta-G solvation = -3412.615070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61551 -39.33093 -37.81932 -36.17349 -33.98118 -32.27234 -32.18469 -29.88412 -28.45181 -27.14356 -25.32289 -25.24780 -22.92368 -21.72720 -20.06054 -18.71845 -18.07277 -17.40938 -16.51141 -16.27730 -15.51685 -15.42314 -15.24716 -15.05849 -14.50110 -14.19776 -14.02419 -13.70683 -13.28844 -12.81239 -12.68851 -12.54254 -12.44836 -12.00593 -11.96981 -11.76314 -11.61702 -11.50554 -11.21948 -11.09980 -11.07075 -10.82850 -10.55887 -10.51122 -10.32448 -9.60791 -9.48016 -9.18061 -8.81233 -8.45644 -7.87810 -6.44185 -4.54394 1.84043 3.09854 3.11453 3.20185 3.23586 3.47983 3.98521 4.14754 4.52957 4.53619 4.69329 4.80766 4.86987 5.03428 5.09631 5.23100 5.31781 5.40637 5.50580 5.55101 5.64407 5.69749 5.80769 5.84070 5.91962 6.00690 6.10945 6.12435 6.17532 6.33755 6.35288 6.46942 6.58008 6.63750 7.04780 7.36743 7.58342 7.77512 8.44623 8.49416 8.71836 9.17180 9.37406 10.62536 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.004393 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.464927 B = 6372.781975 C = 6651.275782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.071 4.071 3 H 0.088 0.912 4 C -0.164 4.164 5 C 0.366 3.634 6 O -0.464 6.464 7 C -0.170 4.170 8 C -0.097 4.097 9 C -0.103 4.103 10 H 0.094 0.906 11 C 0.535 3.465 12 O -0.561 6.561 13 N -0.631 5.631 14 C 0.111 3.889 15 C 0.238 3.762 16 O -0.572 6.572 17 C -0.537 4.537 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.079 3.921 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.391 0.609 38 H 0.272 0.728 39 H 0.081 0.919 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 -5.029 -7.871 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 H 0.107 0.893 4 C -0.202 4.202 5 C 0.242 3.758 6 O -0.338 6.338 7 C -0.208 4.208 8 C -0.135 4.135 9 C -0.124 4.124 10 H 0.113 0.887 11 C 0.324 3.676 12 O -0.442 6.442 13 N -0.364 5.364 14 C -0.011 4.011 15 C 0.196 3.804 16 O -0.384 6.384 17 C -0.575 4.575 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.044 4.044 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.968 -5.837 -7.973 11.060 hybrid contribution 1.238 1.122 -0.131 1.675 sum -3.730 -4.715 -8.104 10.091 Atomic orbital electron populations 1.21991 0.94283 1.02370 1.02541 1.20957 0.96780 0.99826 0.91449 0.89322 1.22382 1.03579 0.94290 0.99938 1.24896 0.73689 0.90385 0.86832 1.90393 1.31818 1.71742 1.39832 1.22352 1.03862 1.00148 0.94397 1.21404 1.02147 0.92838 0.97143 1.21310 1.02244 0.95458 0.93435 0.88744 1.19949 0.82606 0.80281 0.84719 1.90632 1.26287 1.68182 1.59056 1.50266 1.22871 1.28379 1.34914 1.23433 0.98666 0.89391 0.89636 1.19851 0.87461 0.88484 0.84556 1.86068 1.26510 1.63043 1.62785 1.21546 0.92523 0.92019 1.51440 0.91035 1.25055 0.96610 0.98249 0.93049 1.69406 1.03347 1.31364 1.49709 0.86309 0.78966 0.83515 0.77923 1.19439 1.20631 1.20681 1.24336 0.81674 0.95611 1.02773 0.91362 0.92410 0.92389 0.87973 0.88981 0.88154 0.89126 0.90234 0.89967 0.91192 0.89676 0.75400 0.91742 0.90059 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.35 37.16 0.31 -1.65 16 2 C -0.07 -0.86 2.67 -90.52 -0.24 -1.10 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.16 -1.69 5.65 -27.49 -0.16 -1.84 16 5 C 0.37 4.32 5.75 -28.48 -0.16 4.16 16 6 O -0.46 -6.90 17.89 6.00 0.11 -6.79 16 7 C -0.17 -1.76 6.17 -27.49 -0.17 -1.93 16 8 C -0.10 -1.22 4.41 -26.63 -0.12 -1.34 16 9 C -0.10 -1.43 2.00 -91.81 -0.18 -1.61 16 10 H 0.09 1.23 7.86 -51.93 -0.41 0.82 16 11 C 0.54 9.86 6.29 -10.98 -0.07 9.79 16 12 O -0.56 -11.92 16.32 5.55 0.09 -11.83 16 13 N -0.63 -12.36 3.61 -178.12 -0.64 -13.00 16 14 C 0.11 2.30 8.23 -2.97 -0.02 2.28 16 15 C 0.24 5.42 1.40 -90.85 -0.13 5.29 16 16 O -0.57 -14.13 13.49 -35.23 -0.48 -14.60 16 17 C -0.54 -12.91 8.61 -34.44 -0.30 -13.21 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 20 N -0.90 -21.80 11.21 55.43 0.62 -21.18 16 21 Si 0.91 18.80 29.54 -169.99 -5.02 13.77 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.08 1.56 7.86 -2.84 -0.02 1.53 16 26 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.74 5.61 -51.93 -0.29 0.45 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.08 1.11 6.04 -51.93 -0.31 0.80 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 37 H 0.39 9.73 6.61 45.56 0.30 10.03 16 38 H 0.27 6.29 8.31 -40.82 -0.34 5.96 16 39 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 40 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -28.13 324.73 -7.04 -35.17 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.26 Total: 11.53 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.36 Total: 2.03 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.02 Total: -34.18 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.28 Total: -33.23 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.13 -7.04 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.538 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds