Wall clock time and date at job start Tue Mar 31 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.49751 * 2 1 4 4 C 1.53234 * 109.47611 * 239.96534 * 2 1 3 5 5 C 1.51276 * 108.53327 * 185.39256 * 4 2 1 6 6 O 1.20755 * 120.84935 * 231.32844 * 5 4 2 7 7 C 1.51263 * 118.29738 * 51.34993 * 5 4 2 8 8 C 1.53226 * 108.54109 * 308.65192 * 7 5 4 9 9 C 1.52958 * 109.40423 * 54.62822 * 8 7 5 10 10 H 1.08992 * 109.41243 * 56.50999 * 9 8 7 11 11 C 1.50699 * 109.41143 * 176.29717 * 9 8 7 12 12 O 1.21284 * 119.99986 * 94.66656 * 11 9 8 13 13 N 1.34773 * 119.99942 * 274.65952 * 11 9 8 14 14 C 1.47060 * 136.05995 * 359.63491 * 13 11 9 15 15 C 1.53236 * 88.08478 * 207.19984 * 14 13 11 16 16 O 1.42908 * 114.19338 * 87.72689 * 15 14 13 17 17 C 1.50700 * 114.32680 * 220.46777 * 15 14 13 18 18 H 1.07997 * 119.99784 * 99.36624 * 17 15 14 19 19 C 1.37883 * 120.00092 * 279.36228 * 17 15 14 20 20 N 1.31519 * 119.99978 * 5.33004 * 19 17 15 21 21 Si 1.86794 * 119.99929 * 185.32248 * 19 17 15 22 22 H 1.48505 * 109.46800 * 95.00388 * 21 19 17 23 23 H 1.48497 * 109.47433 * 215.00180 * 21 19 17 24 24 H 1.48491 * 109.47461 * 335.00358 * 21 19 17 25 25 C 1.47072 * 136.05557 * 180.02562 * 13 11 9 26 26 H 1.09000 * 109.47108 * 175.16079 * 1 2 3 27 27 H 1.09007 * 109.46562 * 295.15285 * 1 2 3 28 28 H 1.08998 * 109.47329 * 55.15450 * 1 2 3 29 29 H 1.08998 * 109.63021 * 305.10390 * 4 2 1 30 30 H 1.09002 * 109.62271 * 65.49061 * 4 2 1 31 31 H 1.09007 * 109.62476 * 68.37128 * 7 5 4 32 32 H 1.09005 * 109.62216 * 188.74427 * 7 5 4 33 33 H 1.08994 * 109.48261 * 174.61024 * 8 7 5 34 34 H 1.09000 * 109.47782 * 294.64723 * 8 7 5 35 35 H 1.09006 * 113.47000 * 321.93739 * 14 13 11 36 36 H 1.08998 * 113.47007 * 92.37048 * 14 13 11 37 37 H 0.96697 * 113.99859 * 81.21119 * 16 15 14 38 38 H 0.96993 * 120.00210 * 180.02562 * 20 19 17 39 39 H 1.09005 * 113.46034 * 267.62288 * 25 13 11 40 40 H 1.08999 * 113.46505 * 38.00262 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2507 5 6 3.5475 -0.8284 -1.1635 6 8 4.2474 -0.4685 -2.0793 7 6 4.1547 -1.3965 0.1001 8 6 3.5671 -0.6491 1.3017 9 6 2.0402 -0.7219 1.2483 10 1 1.7281 -1.7657 1.2162 11 6 1.4642 -0.0660 2.4768 12 8 1.1274 1.0986 2.4409 13 7 1.3234 -0.7735 3.6152 14 6 1.5954 -2.1533 4.0449 15 6 0.4744 -1.9980 5.0780 16 8 -0.8254 -2.3315 4.5865 17 6 0.7787 -2.6105 6.4209 18 1 1.1206 -1.9870 7.2338 19 6 0.6205 -3.9668 6.6119 20 7 0.3057 -4.7415 5.5967 21 14 0.8533 -4.7041 8.3123 22 1 -0.4641 -4.8143 8.9887 23 1 1.4603 -6.0536 8.1879 24 1 1.7489 -3.8305 9.1122 25 6 0.8234 -0.5073 4.9724 26 1 -0.3633 -1.0240 -0.0867 27 1 -0.3633 0.4368 0.9303 28 1 -0.3634 0.5872 -0.8434 29 1 1.6064 -1.7215 -1.2996 30 1 1.7614 -0.1581 -2.1400 31 1 3.9158 -2.4574 0.1761 32 1 5.2366 -1.2656 0.0772 33 1 3.9209 -1.1091 2.2244 34 1 3.8827 0.3937 1.2709 35 1 1.3777 -2.8976 3.2787 36 1 2.5817 -2.2827 4.4905 37 1 -1.0128 -3.2801 4.5822 38 1 0.1941 -5.6956 5.7311 39 1 1.6020 -0.1934 5.6679 40 1 -0.0487 0.1462 4.9933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322433748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:01 Heat of formation + Delta-G solvation = -103.443657 kcal Electronic energy + Delta-G solvation = -22928.936232 eV Core-core repulsion = 19516.376186 eV Total energy + Delta-G solvation = -3412.560047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50358 -39.41842 -37.95270 -36.03845 -34.06186 -32.63967 -32.33311 -29.95597 -28.35804 -26.90563 -25.28663 -25.13809 -22.88376 -21.37072 -20.05630 -19.28213 -18.32417 -17.44422 -16.45861 -15.97071 -15.66898 -15.38343 -15.15089 -14.92662 -14.66616 -14.22958 -14.13637 -13.59816 -13.17514 -12.92248 -12.68314 -12.39989 -12.37134 -12.08116 -12.05394 -11.84719 -11.68450 -11.54035 -11.10904 -11.02756 -10.94898 -10.83570 -10.59806 -10.52802 -10.34035 -9.55360 -9.49066 -9.17066 -8.85532 -8.46291 -7.89452 -6.44434 -4.53700 1.82474 3.10513 3.11841 3.20699 3.22922 3.47476 3.98058 4.15451 4.50014 4.58239 4.69310 4.80955 4.84777 5.09383 5.14879 5.23746 5.30544 5.43529 5.52151 5.58660 5.64546 5.72949 5.77753 5.85914 5.92201 5.98608 6.07677 6.15689 6.29146 6.34896 6.43764 6.48240 6.57953 6.64422 7.01628 7.35876 7.57491 7.77665 8.45805 8.50441 8.71347 9.17359 9.25194 10.62822 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.004428 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.772392 B = 6321.570316 C = 6707.598383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.364 3.636 6 O -0.464 6.464 7 C -0.167 4.167 8 C -0.101 4.101 9 C -0.102 4.102 10 H 0.096 0.904 11 C 0.543 3.457 12 O -0.561 6.561 13 N -0.634 5.634 14 C 0.077 3.923 15 C 0.239 3.761 16 O -0.568 6.568 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.108 3.892 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.388 0.612 38 H 0.272 0.728 39 H 0.085 0.915 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 1.810 -8.144 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 H 0.102 0.898 4 C -0.203 4.203 5 C 0.240 3.760 6 O -0.337 6.337 7 C -0.205 4.205 8 C -0.139 4.139 9 C -0.124 4.124 10 H 0.114 0.886 11 C 0.332 3.668 12 O -0.442 6.442 13 N -0.367 5.367 14 C -0.046 4.046 15 C 0.197 3.803 16 O -0.377 6.377 17 C -0.575 4.575 18 H 0.090 0.910 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.014 4.014 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.240 0.760 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.217 3.183 -8.958 10.400 hybrid contribution 0.193 -1.299 0.998 1.650 sum 4.410 1.884 -7.960 9.293 Atomic orbital electron populations 1.21907 0.93762 1.01908 1.03271 1.20884 0.96997 0.99662 0.90771 0.89791 1.22431 0.94024 1.03541 1.00279 1.24945 0.91705 0.72493 0.86831 1.90392 1.65493 1.38050 1.39805 1.22311 1.01980 1.02114 0.94095 1.21403 0.93003 1.01533 0.97960 1.21343 0.96003 1.01707 0.93320 0.88608 1.19794 0.78272 0.85637 0.83061 1.90631 1.52317 1.16791 1.84423 1.49818 1.61442 1.15359 1.10090 1.24086 1.02049 0.80677 0.97738 1.19504 0.80902 0.89160 0.90724 1.86084 1.33096 1.31290 1.87265 1.21390 1.46321 0.93138 0.96627 0.91016 1.25051 0.93358 0.96833 0.97648 1.69614 1.47550 1.05868 1.30338 0.86367 0.78625 0.78429 0.83407 1.20294 1.20971 1.19538 1.23273 0.97730 0.99496 0.80940 0.92640 0.90774 0.92576 0.88108 0.89077 0.87925 0.89021 0.89909 0.90838 0.91623 0.90059 0.75977 0.91846 0.89656 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.93 37.16 0.33 -1.68 16 2 C -0.06 -0.82 1.91 -90.52 -0.17 -0.99 16 3 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 4 C -0.17 -1.75 5.45 -27.48 -0.15 -1.90 16 5 C 0.36 4.33 6.72 -28.48 -0.19 4.14 16 6 O -0.46 -6.96 17.89 6.00 0.11 -6.85 16 7 C -0.17 -1.71 6.17 -27.49 -0.17 -1.88 16 8 C -0.10 -1.21 5.20 -26.64 -0.14 -1.34 16 9 C -0.10 -1.43 1.84 -91.81 -0.17 -1.60 16 10 H 0.10 1.28 7.96 -51.93 -0.41 0.86 16 11 C 0.54 10.01 6.27 -10.99 -0.07 9.94 16 12 O -0.56 -11.91 15.66 5.55 0.09 -11.82 16 13 N -0.63 -12.41 3.69 -185.40 -0.68 -13.09 16 14 C 0.08 1.54 7.74 -8.65 -0.07 1.47 16 15 C 0.24 5.39 1.42 -91.41 -0.13 5.26 16 16 O -0.57 -13.72 13.52 -35.23 -0.48 -14.19 16 17 C -0.54 -12.85 8.66 -34.44 -0.30 -13.15 16 18 H 0.07 1.69 7.82 -52.49 -0.41 1.28 16 19 C 0.07 1.77 5.35 -17.82 -0.10 1.68 16 20 N -0.89 -21.58 11.56 55.43 0.64 -20.94 16 21 Si 0.90 18.77 29.54 -169.99 -5.02 13.75 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C 0.11 2.24 8.03 -8.52 -0.07 2.17 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.23 6.06 -51.93 -0.31 0.91 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 36 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 37 H 0.39 9.38 7.02 45.56 0.32 9.70 16 38 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 39 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -27.88 329.57 -7.20 -35.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.43 Total: 10.97 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.39 Total: 2.12 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.04 Total: -34.03 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.28 Total: -32.86 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.88 -7.20 -35.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322433748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.366 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds