Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.62453 * 2 1 4 4 C 1.53240 * 109.61899 * 239.35427 * 2 1 3 5 5 C 1.52953 * 109.39763 * 185.58337 * 4 2 1 6 6 H 1.08999 * 109.42026 * 303.63042 * 5 4 2 7 7 C 1.50702 * 109.41205 * 183.77786 * 5 4 2 8 8 O 1.21284 * 120.00194 * 359.85431 * 7 5 4 9 9 N 1.34783 * 120.00096 * 179.86602 * 7 5 4 10 10 C 1.47579 * 134.49277 * 179.97438 * 9 7 5 11 11 C 1.53950 * 86.11702 * 155.35219 * 10 9 7 12 12 O 1.42898 * 113.74209 * 269.15554 * 11 10 9 13 13 C 1.50695 * 113.73904 * 137.95109 * 11 10 9 14 14 H 1.08002 * 120.00005 * 17.19385 * 13 11 10 15 15 C 1.37882 * 119.99717 * 197.19268 * 13 11 10 16 16 N 1.31517 * 119.99594 * 194.35793 * 15 13 11 17 17 Si 1.86793 * 120.00089 * 14.35797 * 15 13 11 18 18 H 1.48507 * 109.47119 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47246 * 299.99960 * 17 15 13 20 20 H 1.48497 * 109.47190 * 59.99857 * 17 15 13 21 21 C 1.47809 * 134.45575 * 359.86032 * 9 7 5 22 22 C 1.52963 * 109.76076 * 63.70832 * 5 4 2 23 23 C 1.53231 * 109.40090 * 296.36275 * 22 5 4 24 24 C 1.51270 * 109.62705 * 120.37586 * 2 1 3 25 25 O 1.20757 * 120.85316 * 351.09168 * 24 2 1 26 26 H 1.09001 * 109.47412 * 299.61946 * 1 2 3 27 27 H 1.08996 * 109.47387 * 59.61886 * 1 2 3 28 28 H 1.09005 * 109.47340 * 179.62520 * 1 2 3 29 29 H 1.08999 * 109.42376 * 65.64657 * 4 2 1 30 30 H 1.08997 * 109.54311 * 305.60518 * 4 2 1 31 31 H 1.09006 * 113.76705 * 41.05021 * 10 9 7 32 32 H 1.08994 * 113.77186 * 269.65422 * 10 9 7 33 33 H 0.96695 * 114.00276 * 174.15046 * 12 11 10 34 34 H 0.97001 * 119.99943 * 354.86478 * 16 15 13 35 35 H 1.08998 * 113.76817 * 90.38175 * 21 9 7 36 36 H 1.09003 * 113.83162 * 318.92017 * 21 9 7 37 37 H 1.09005 * 109.47940 * 56.33820 * 22 5 4 38 38 H 1.08992 * 109.47992 * 176.36801 * 22 5 4 39 39 H 1.09002 * 109.62340 * 174.33809 * 23 22 5 40 40 H 1.08998 * 109.62474 * 294.91111 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0445 -0.7358 -1.2418 5 6 3.5675 -0.8547 -1.1672 6 1 4.0038 0.1385 -1.0607 7 6 4.0825 -1.4950 -2.4305 8 8 3.3070 -1.8257 -3.3024 9 7 5.4048 -1.7003 -2.5914 10 6 6.2385 -2.2822 -3.6611 11 6 7.3817 -1.4204 -3.0951 12 8 7.4790 -0.1273 -3.6954 13 6 8.7054 -2.1375 -3.0267 14 1 8.8605 -3.0405 -3.5985 15 6 9.7184 -1.6408 -2.2341 16 7 10.9471 -2.0859 -2.3817 17 14 9.3456 -0.3357 -0.9508 18 1 10.5961 0.0283 -0.2372 19 1 8.7880 0.8687 -1.6171 20 1 8.3565 -0.8659 0.0216 21 6 6.6020 -1.4309 -1.7675 22 6 3.9608 -1.7144 0.0353 23 6 3.5183 -1.0171 1.3260 24 6 2.0381 -0.7205 1.2292 25 8 1.2814 -1.0509 2.1104 26 1 -0.3634 0.5079 0.8934 27 1 -0.3634 0.5197 -0.8865 28 1 -0.3634 -1.0277 -0.0067 29 1 1.7669 -0.1767 -2.1354 30 1 1.6036 -1.7317 -1.2844 31 1 5.9277 -1.9950 -4.6657 32 1 6.4030 -3.3545 -3.5557 33 1 8.1365 0.4494 -3.2830 34 1 11.1283 -2.8154 -2.9949 35 1 6.8734 -2.2528 -1.1050 36 1 6.5810 -0.4650 -1.2627 37 1 3.4736 -2.6867 -0.0381 38 1 5.0423 -1.8496 0.0473 39 1 3.7057 -1.6707 2.1780 40 1 4.0712 -0.0856 1.4470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324986959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = -99.575543 kcal Electronic energy + Delta-G solvation = -22946.213630 eV Core-core repulsion = 19533.821317 eV Total energy + Delta-G solvation = -3412.392313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62383 -39.63682 -37.94070 -36.07693 -34.32962 -33.15195 -32.68639 -30.11062 -28.64493 -26.54647 -25.61940 -24.91453 -22.60984 -22.28659 -19.91545 -19.27074 -18.64273 -18.00938 -16.70231 -16.30103 -15.97801 -15.67238 -15.34905 -15.15597 -14.67697 -14.19906 -14.16258 -13.69729 -13.35820 -13.14706 -12.87751 -12.64196 -12.53914 -12.38048 -12.22045 -12.03300 -11.88278 -11.59597 -11.32454 -11.18765 -11.10714 -10.85577 -10.83974 -10.49713 -10.05336 -9.57150 -9.47512 -9.42012 -9.08224 -8.54977 -8.08841 -6.79404 -4.53384 1.77604 2.94241 3.00826 3.07882 3.17768 3.35517 3.83517 4.11295 4.39793 4.45421 4.55987 4.71447 4.77103 4.93962 4.98755 5.06320 5.16737 5.21469 5.28795 5.40193 5.42211 5.57834 5.64685 5.72097 5.76125 5.80158 5.86176 5.94812 5.97235 6.09093 6.12248 6.13857 6.24492 6.36839 6.64057 7.31426 7.48856 8.02130 8.19753 8.50064 8.51825 8.63867 9.22581 10.56973 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.005029 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.927305 B = 5566.533117 C = 6246.417576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 H 0.106 0.894 4 C -0.087 4.087 5 C -0.108 4.108 6 H 0.100 0.900 7 C 0.535 3.465 8 O -0.557 6.557 9 N -0.630 5.630 10 C 0.128 3.872 11 C 0.199 3.801 12 O -0.566 6.566 13 C -0.618 4.618 14 H 0.070 0.930 15 C 0.036 3.964 16 N -0.886 5.886 17 Si 1.039 2.961 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.056 3.944 22 C -0.109 4.109 23 C -0.168 4.168 24 C 0.365 3.635 25 O -0.457 6.457 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.367 0.633 34 H 0.275 0.725 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 4.814 6.932 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.124 0.876 4 C -0.125 4.125 5 C -0.129 4.129 6 H 0.118 0.882 7 C 0.324 3.676 8 O -0.437 6.437 9 N -0.364 5.364 10 C 0.006 3.994 11 C 0.158 3.842 12 O -0.374 6.374 13 C -0.656 4.656 14 H 0.088 0.912 15 C -0.172 4.172 16 N -0.518 5.518 17 Si 0.867 3.133 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.198 1.198 21 C -0.067 4.067 22 C -0.147 4.147 23 C -0.205 4.205 24 C 0.240 3.760 25 O -0.330 6.330 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.216 0.784 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.409 5.211 7.708 16.321 hybrid contribution -0.034 -0.789 -0.779 1.110 sum -13.443 4.422 6.929 15.757 Atomic orbital electron populations 1.21639 0.93011 1.02753 1.02157 1.21931 0.97985 1.01236 0.94933 0.87645 1.21387 0.92779 1.01755 0.96533 1.21320 0.97182 1.01007 0.93435 0.88181 1.20045 0.80550 0.79005 0.87989 1.90655 1.55123 1.53558 1.44326 1.50166 1.03949 1.59854 1.22417 1.23222 0.86067 0.97977 0.92091 1.20411 0.93713 0.82743 0.87297 1.86378 1.63115 1.26388 1.61519 1.22201 0.97704 1.13790 1.31920 0.91192 1.25833 0.92395 1.00730 0.98281 1.70802 1.18943 1.25017 1.37084 0.84157 0.76645 0.75593 0.76903 1.20327 1.20629 1.19843 1.24722 0.82792 1.00469 0.98678 1.21564 1.03066 0.98762 0.91338 1.22324 0.94874 1.03413 0.99935 1.24955 0.90871 0.74456 0.85718 1.90378 1.60151 1.42680 1.39746 0.92039 0.91785 0.92216 0.89734 0.90709 0.90841 0.89092 0.78377 0.91480 0.88638 0.91573 0.90831 0.89526 0.88846 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.60 37.15 0.32 -1.00 16 2 C -0.14 -1.39 3.01 -91.37 -0.28 -1.67 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.09 -1.01 3.82 -26.63 -0.10 -1.11 16 5 C -0.11 -1.39 2.25 -91.81 -0.21 -1.60 16 6 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.53 9.41 7.38 -10.98 -0.08 9.33 16 8 O -0.56 -11.50 16.67 5.55 0.09 -11.41 16 9 N -0.63 -11.71 3.57 -178.08 -0.64 -12.35 16 10 C 0.13 2.59 8.23 -2.97 -0.02 2.56 16 11 C 0.20 4.29 1.07 -90.83 -0.10 4.20 16 12 O -0.57 -12.45 13.47 -35.23 -0.47 -12.93 16 13 C -0.62 -15.35 9.04 -34.44 -0.31 -15.66 16 14 H 0.07 1.88 8.06 -52.49 -0.42 1.46 16 15 C 0.04 0.90 5.44 -17.82 -0.10 0.80 16 16 N -0.89 -24.36 13.70 55.43 0.76 -23.60 16 17 Si 1.04 20.87 24.56 -169.99 -4.17 16.70 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.03 5.81 56.52 0.33 -4.70 16 20 H -0.27 -4.84 6.48 56.52 0.37 -4.47 16 21 C 0.06 1.03 3.64 -2.83 -0.01 1.02 16 22 C -0.11 -1.26 5.13 -26.63 -0.14 -1.39 16 23 C -0.17 -1.63 6.17 -27.48 -0.17 -1.80 16 24 C 0.36 4.09 6.58 -28.47 -0.19 3.90 16 25 O -0.46 -6.45 16.86 6.00 0.10 -6.34 16 26 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.75 8.09 -51.93 -0.42 1.32 16 33 H 0.37 7.43 6.07 45.56 0.28 7.70 16 34 H 0.27 7.57 8.73 -40.82 -0.36 7.21 16 35 H 0.10 1.69 7.74 -51.93 -0.40 1.29 16 36 H 0.07 1.09 6.87 -51.93 -0.36 0.74 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.03 5.99 -51.93 -0.31 0.72 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -30.13 319.44 -6.43 -36.56 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.53 Total: 10.97 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.38 Total: -2.41 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.12 Total: -35.95 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.28 Total: -30.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.17 Total: 16.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.13 -6.43 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324986959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.018 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds