Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.62078 * 2 1 4 4 C 1.53224 * 109.62617 * 120.37751 * 2 1 3 5 5 C 1.52962 * 109.39995 * 174.34391 * 4 2 1 6 6 H 1.09001 * 109.41469 * 56.43929 * 5 4 2 7 7 C 1.50704 * 109.41130 * 176.29913 * 5 4 2 8 8 O 1.21281 * 120.00287 * 92.73103 * 7 5 4 9 9 N 1.34779 * 119.99912 * 272.72997 * 7 5 4 10 10 C 1.47586 * 134.49380 * 174.62890 * 9 7 5 11 11 C 1.53938 * 86.11413 * 155.36217 * 10 9 7 12 12 O 1.42903 * 113.74418 * 269.15353 * 11 10 9 13 13 C 1.50708 * 113.74117 * 137.95771 * 11 10 9 14 14 H 1.08001 * 119.99490 * 1.91566 * 13 11 10 15 15 C 1.37878 * 120.00154 * 182.19906 * 13 11 10 16 16 N 1.31518 * 119.99716 * 359.71754 * 15 13 11 17 17 Si 1.86796 * 120.00026 * 179.72047 * 15 13 11 18 18 H 1.48498 * 109.46798 * 59.99998 * 17 15 13 19 19 H 1.48503 * 109.47098 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47094 * 300.00155 * 17 15 13 21 21 C 1.47816 * 134.45546 * 354.50141 * 9 7 5 22 22 C 1.52958 * 109.81985 * 296.40140 * 5 4 2 23 23 C 1.53236 * 109.40029 * 63.60151 * 22 5 4 24 24 C 1.51263 * 108.53693 * 305.37125 * 23 22 5 25 25 O 1.20755 * 120.85102 * 231.32845 * 24 23 22 26 26 H 1.08996 * 109.47329 * 299.61547 * 1 2 3 27 27 H 1.09005 * 109.47693 * 59.62340 * 1 2 3 28 28 H 1.09001 * 109.46771 * 179.62017 * 1 2 3 29 29 H 1.09004 * 109.48321 * 54.37054 * 4 2 1 30 30 H 1.08994 * 109.48632 * 294.32235 * 4 2 1 31 31 H 1.09000 * 113.76423 * 41.05503 * 10 9 7 32 32 H 1.08997 * 113.86824 * 269.67707 * 10 9 7 33 33 H 0.96691 * 114.00342 * 178.07882 * 12 11 10 34 34 H 0.97004 * 119.99500 * 179.97438 * 16 15 13 35 35 H 1.09003 * 113.77061 * 90.37742 * 21 9 7 36 36 H 1.08999 * 113.83451 * 318.91352 * 21 9 7 37 37 H 1.09001 * 109.48609 * 183.57608 * 22 5 4 38 38 H 1.08996 * 109.48649 * 303.62277 * 22 5 4 39 39 H 1.09000 * 109.62290 * 185.65748 * 23 22 5 40 40 H 1.09001 * 109.78417 * 65.18156 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0446 -0.7298 1.2451 5 6 3.5676 -0.8506 1.1700 6 1 4.0048 0.1417 1.0594 7 6 4.0826 -1.4867 2.4355 8 8 4.2398 -2.6881 2.4898 9 7 4.3684 -0.7205 3.5068 10 6 4.7806 -0.9980 4.8965 11 6 5.3982 0.4120 4.8841 12 8 6.7636 0.4384 4.4635 13 6 5.1590 1.1903 6.1523 14 1 4.6248 0.7346 6.9729 15 6 5.6170 2.4861 6.2627 16 7 6.2675 3.0410 5.2633 17 14 5.3138 3.4535 7.8316 18 1 5.9464 2.7505 8.9765 19 1 5.9023 4.8104 7.6981 20 1 3.8522 3.5683 8.0676 21 6 4.3971 0.7355 3.7602 22 6 3.9608 -1.7144 -0.0296 23 6 3.5182 -1.0215 -1.3226 24 6 2.0381 -0.7246 -1.2268 25 8 1.2815 -1.0573 -2.1072 26 1 -0.3634 0.5078 0.8934 27 1 -0.3635 0.5197 -0.8866 28 1 -0.3633 -1.0277 -0.0068 29 1 1.6029 -1.7253 1.2916 30 1 1.7681 -0.1671 2.1367 31 1 5.5148 -1.7986 4.9854 32 1 3.9470 -1.1065 5.5904 33 1 7.1466 1.3254 4.4262 34 1 6.5894 3.9527 5.3409 35 1 3.4495 1.1379 4.1183 36 1 4.8260 1.3163 2.9436 37 1 5.0424 -1.8494 -0.0414 38 1 3.4737 -2.6864 0.0471 39 1 3.7057 -1.6779 -2.1724 40 1 4.0708 -0.0906 -1.4502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324986960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = -108.251030 kcal Electronic energy + Delta-G solvation = -22709.559139 eV Core-core repulsion = 19296.790629 eV Total energy + Delta-G solvation = -3412.768510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47246 -39.39493 -37.68956 -35.94974 -33.98317 -32.99156 -32.26866 -30.21811 -28.24128 -26.30370 -25.39086 -25.29156 -22.73711 -22.03382 -19.89365 -19.17636 -18.23657 -17.42155 -16.43151 -16.13634 -15.84381 -15.39617 -15.18116 -14.98095 -14.56075 -14.15790 -14.00681 -13.52608 -12.99096 -12.89385 -12.70512 -12.61824 -12.31748 -12.22705 -12.04075 -11.81206 -11.60663 -11.42721 -11.22239 -11.09807 -11.07562 -11.01406 -10.74878 -10.57418 -10.33420 -9.61768 -9.43406 -9.18595 -8.80505 -8.46386 -7.88551 -6.43717 -4.54103 1.84103 3.09695 3.13037 3.19312 3.21532 3.47196 3.90611 4.14951 4.52638 4.58190 4.65224 4.78975 4.84154 5.03910 5.10481 5.22331 5.29837 5.38989 5.45328 5.59741 5.62073 5.69403 5.76922 5.85378 5.90734 5.93184 6.05017 6.10127 6.14229 6.22161 6.33924 6.46621 6.57659 6.63506 7.04736 7.37764 7.58428 7.77579 8.43900 8.48985 8.70503 9.17250 9.37664 10.62952 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004312 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.536593 B = 6492.070507 C = 6959.226803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 H 0.108 0.892 4 C -0.095 4.095 5 C -0.107 4.107 6 H 0.095 0.905 7 C 0.533 3.467 8 O -0.563 6.563 9 N -0.631 5.631 10 C 0.110 3.890 11 C 0.239 3.761 12 O -0.572 6.572 13 C -0.539 4.539 14 H 0.070 0.930 15 C 0.074 3.926 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.079 3.921 22 C -0.094 4.094 23 C -0.169 4.169 24 C 0.366 3.634 25 O -0.458 6.458 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.391 0.609 34 H 0.273 0.727 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -0.928 -8.220 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 H 0.126 0.874 4 C -0.133 4.133 5 C -0.128 4.128 6 H 0.113 0.887 7 C 0.322 3.678 8 O -0.444 6.444 9 N -0.364 5.364 10 C -0.012 4.012 11 C 0.197 3.803 12 O -0.384 6.384 13 C -0.577 4.577 14 H 0.089 0.911 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.044 4.044 22 C -0.132 4.132 23 C -0.207 4.207 24 C 0.242 3.758 25 O -0.331 6.331 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.883 -2.316 -8.912 11.496 hybrid contribution 0.013 1.390 0.865 1.638 sum -6.869 -0.926 -8.047 10.621 Atomic orbital electron populations 1.21649 0.93011 1.02690 1.02271 1.21887 0.97907 1.01341 0.94704 0.87402 1.21477 0.93081 1.01562 0.97138 1.21274 0.96760 1.01214 0.93561 0.88709 1.20002 0.77349 0.86306 0.84122 1.90634 1.55099 1.14803 1.83821 1.50277 1.65487 1.10014 1.10624 1.23443 0.97483 0.99895 0.80341 1.19838 0.80375 0.89551 0.90530 1.86067 1.25743 1.36535 1.90056 1.21470 1.37449 0.97972 1.00786 0.91135 1.25053 0.93631 0.97289 0.96951 1.69395 1.37604 1.15542 1.31281 0.86407 0.78778 0.78711 0.82747 1.19848 1.20997 1.19898 1.24344 1.01307 0.79003 0.99718 1.21338 1.02602 0.98802 0.90490 1.22346 0.94798 1.03329 1.00195 1.24931 0.90935 0.74362 0.85598 1.90371 1.60217 1.42820 1.39732 0.91717 0.91987 0.92271 0.90809 0.89992 0.91173 0.89642 0.75400 0.91629 0.90030 0.91292 0.90187 0.90394 0.89096 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.58 37.16 0.32 -1.08 16 2 C -0.14 -1.46 3.01 -91.38 -0.27 -1.74 16 3 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 4 C -0.09 -1.14 4.49 -26.64 -0.12 -1.26 16 5 C -0.11 -1.48 2.25 -91.81 -0.21 -1.69 16 6 H 0.09 1.23 7.76 -51.93 -0.40 0.82 16 7 C 0.53 9.99 7.13 -10.98 -0.08 9.91 16 8 O -0.56 -12.30 16.94 5.56 0.09 -12.21 16 9 N -0.63 -12.46 3.61 -178.13 -0.64 -13.10 16 10 C 0.11 2.31 8.23 -2.97 -0.02 2.28 16 11 C 0.24 5.45 1.40 -90.85 -0.13 5.32 16 12 O -0.57 -14.15 13.49 -35.23 -0.48 -14.63 16 13 C -0.54 -12.96 8.61 -34.44 -0.30 -13.26 16 14 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 16 N -0.90 -21.81 11.21 55.43 0.62 -21.19 16 17 Si 0.91 18.80 29.54 -169.99 -5.02 13.78 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.08 1.57 7.82 -2.84 -0.02 1.54 16 22 C -0.09 -1.19 4.71 -26.63 -0.13 -1.31 16 23 C -0.17 -1.75 6.17 -27.48 -0.17 -1.92 16 24 C 0.37 4.33 6.58 -28.48 -0.19 4.15 16 25 O -0.46 -6.70 16.88 6.00 0.10 -6.59 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 33 H 0.39 9.73 6.61 45.56 0.30 10.03 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 36 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -28.26 331.39 -7.28 -35.54 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.54 Total: 10.80 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.41 Total: 2.61 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.02 Total: -34.29 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.28 Total: -33.43 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.26 -7.28 -35.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324986960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.709 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds