Wall clock time and date at job start Tue Mar 31 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99703 * 2 1 4 4 H 1.48494 * 109.47150 * 89.99491 * 3 2 1 5 5 H 1.48499 * 109.47003 * 209.99514 * 3 2 1 6 6 H 1.48501 * 109.46865 * 329.99385 * 3 2 1 7 7 C 1.37873 * 120.00616 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00603 * 176.41884 * 7 2 1 9 9 C 1.50708 * 119.99606 * 356.42070 * 7 2 1 10 10 O 1.42896 * 110.64159 * 297.88907 * 9 7 2 11 11 C 1.55155 * 110.71829 * 174.74661 * 9 7 2 12 12 C 1.54909 * 101.58166 * 206.13621 * 11 9 7 13 13 N 1.47427 * 104.83084 * 37.00770 * 12 11 9 14 14 C 1.34778 * 125.64387 * 155.90455 * 13 12 11 15 15 O 1.21612 * 119.99669 * 179.97438 * 14 13 12 16 16 C 1.47099 * 120.00381 * 359.97438 * 14 13 12 17 17 C 1.32988 * 120.00297 * 186.97301 * 16 14 13 18 18 C 1.50707 * 119.99767 * 14.29832 * 17 16 14 19 19 H 1.09002 * 110.45729 * 7.85085 * 18 17 16 20 20 C 1.54507 * 110.51077 * 130.45425 * 18 17 16 21 21 C 1.54476 * 104.06177 * 118.64451 * 20 18 17 22 22 O 1.44426 * 104.80635 * 23.97756 * 21 20 18 23 23 C 1.44425 * 105.27247 * 319.48871 * 22 21 20 24 24 C 1.47014 * 108.70316 * 335.87340 * 13 12 11 25 25 H 0.97001 * 119.99644 * 174.28700 * 1 2 3 26 26 H 0.96706 * 114.00177 * 53.89912 * 10 9 7 27 27 H 1.09001 * 111.00564 * 324.20781 * 11 9 7 28 28 H 1.08997 * 111.00329 * 88.02543 * 11 9 7 29 29 H 1.08993 * 110.37104 * 155.85194 * 12 11 9 30 30 H 1.09003 * 110.36527 * 278.17083 * 12 11 9 31 31 H 1.08004 * 119.99842 * 6.98063 * 16 14 13 32 32 H 1.08006 * 120.00543 * 194.29072 * 17 16 14 33 33 H 1.09004 * 110.51366 * 237.28800 * 20 18 17 34 34 H 1.09002 * 110.51432 * 359.86528 * 20 18 17 35 35 H 1.08998 * 110.37613 * 142.80616 * 21 20 18 36 36 H 1.09004 * 110.37393 * 265.14837 * 21 20 18 37 37 H 1.08994 * 110.37353 * 281.67984 * 23 22 21 38 38 H 1.09001 * 110.37581 * 159.33962 * 23 22 21 39 39 H 1.09001 * 109.88546 * 241.63572 * 24 13 12 40 40 H 1.09007 * 109.87975 * 120.47687 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 1.4000 5 1 3.5467 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7002 7 6 2.0046 -1.1939 0.0005 8 1 3.0830 -1.1949 -0.0579 9 6 1.2533 -2.4978 0.0826 10 8 0.5249 -2.5832 1.3090 11 6 2.2228 -3.7002 -0.0649 12 6 1.2801 -4.7925 -0.6286 13 7 0.3709 -4.0730 -1.5392 14 6 -0.2961 -4.6183 -2.5757 15 8 -1.0229 -3.9263 -3.2626 16 6 -0.1449 -6.0503 -2.8761 17 6 -0.6901 -6.5601 -3.9768 18 6 -1.1777 -5.6442 -5.0698 19 1 -0.8852 -4.6147 -4.8630 20 6 -0.6290 -6.0977 -6.4411 21 6 -1.8955 -6.4278 -7.2617 22 8 -2.9469 -5.6529 -6.6453 23 6 -2.7109 -5.7539 -5.2241 24 6 0.3116 -2.6626 -1.1288 25 1 -0.4850 -0.8359 -0.0836 26 1 -0.0622 -1.8320 1.4709 27 1 3.0228 -3.4729 -0.7696 28 1 2.6292 -3.9953 0.9025 29 1 1.8519 -5.5411 -1.1769 30 1 0.7165 -5.2606 0.1785 31 1 0.4088 -6.6878 -2.2027 32 1 -0.7833 -7.6304 -4.0875 33 1 -0.0673 -5.2917 -6.9133 34 1 -0.0031 -6.9830 -6.3283 35 1 -1.7629 -6.1282 -8.3012 36 1 -2.1218 -7.4922 -7.1985 37 1 -3.0622 -6.7149 -4.8485 38 1 -3.2045 -4.9366 -4.6983 39 1 -0.7077 -2.4018 -0.8441 40 1 0.6450 -2.0241 -1.9471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329549757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:31 Heat of formation + Delta-G solvation = -101.933100 kcal Electronic energy + Delta-G solvation = -22566.958134 eV Core-core repulsion = 19154.463590 eV Total energy + Delta-G solvation = -3412.494544 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.03061 -39.16493 -37.66789 -34.76613 -34.14826 -32.35286 -31.09048 -30.21779 -28.79817 -27.73213 -25.40742 -23.37795 -22.82484 -21.90106 -20.72801 -19.74892 -18.56328 -17.90661 -16.96743 -16.31902 -15.83135 -15.46367 -15.33223 -14.86327 -14.22894 -14.05467 -13.88705 -13.64756 -13.32133 -13.20248 -12.96143 -12.72979 -12.25322 -12.06007 -11.75677 -11.56363 -11.29513 -11.10031 -11.04845 -10.87181 -10.81784 -10.71503 -10.59004 -10.20438 -9.87134 -9.36308 -9.32960 -9.03671 -8.69318 -8.34506 -8.04959 -6.58128 -4.44429 1.37523 3.33012 3.36221 3.50109 3.52724 3.53156 3.95386 4.34823 4.65475 4.68716 4.81415 4.88920 4.97075 5.02088 5.20174 5.23985 5.33597 5.37880 5.53505 5.56958 5.60152 5.66003 5.76403 5.82513 5.88977 5.98015 6.13835 6.21443 6.23758 6.54554 6.59808 6.65378 6.73108 6.78231 6.91256 7.06404 7.72967 8.02852 8.15387 8.50966 8.59156 8.88737 9.27906 10.71233 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.004086 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.436965 B = 6850.433024 C = 7431.392889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 1.074 2.926 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.616 4.616 8 H 0.062 0.938 9 C 0.227 3.773 10 O -0.584 6.584 11 C -0.110 4.110 12 C 0.100 3.900 13 N -0.603 5.603 14 C 0.547 3.453 15 O -0.543 6.543 16 C -0.202 4.202 17 C -0.066 4.066 18 C -0.130 4.130 19 H 0.140 0.860 20 C -0.148 4.148 21 C 0.044 3.956 22 O -0.377 6.377 23 C 0.063 3.937 24 C 0.091 3.909 25 H 0.271 0.729 26 H 0.373 0.627 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -14.081 -7.671 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.901 3.099 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.654 4.654 8 H 0.080 0.920 9 C 0.187 3.813 10 O -0.392 6.392 11 C -0.148 4.148 12 C -0.023 4.023 13 N -0.335 5.335 14 C 0.338 3.662 15 O -0.425 6.425 16 C -0.223 4.223 17 C -0.086 4.086 18 C -0.147 4.147 19 H 0.158 0.842 20 C -0.186 4.186 21 C -0.033 4.033 22 O -0.296 6.296 23 C -0.014 4.014 24 C -0.032 4.032 25 H 0.085 0.915 26 H 0.222 0.778 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.303 -12.555 -8.049 14.917 hybrid contribution 0.168 -1.487 0.098 1.500 sum 0.471 -14.042 -7.951 16.144 Atomic orbital electron populations 1.70919 1.06817 1.31334 1.45372 1.26011 0.96394 1.03148 0.91994 0.83462 0.74675 0.74654 0.77072 1.21064 1.21251 1.20786 1.22382 0.95220 0.91023 1.56788 0.91964 1.19789 0.87298 0.94020 0.80213 1.86231 1.61649 1.49236 1.42042 1.22672 0.97044 0.94260 1.00833 1.22377 0.91810 0.95541 0.92595 1.48674 1.44130 1.11840 1.28853 1.18285 0.80230 0.87684 0.80004 1.90605 1.39819 1.63556 1.48528 1.22755 1.04066 0.95111 1.00342 1.23515 0.92917 0.99112 0.93032 1.22495 0.95979 1.03990 0.92268 0.84243 1.23024 0.98274 1.01992 0.95281 1.23405 0.86591 0.95436 0.97837 1.89127 1.49751 1.71928 1.18757 1.23328 0.94453 1.01609 0.81972 1.23276 1.00747 0.79306 0.99832 0.91513 0.77803 0.90254 0.90326 0.91612 0.91556 0.85472 0.85962 0.90477 0.90699 0.89342 0.92602 0.92852 0.88385 0.92357 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.24 12.80 55.43 0.71 -24.53 16 2 C 0.03 0.79 5.21 -17.82 -0.09 0.70 16 3 Si 1.07 23.79 29.91 -169.99 -5.08 18.70 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.62 -16.12 8.11 -34.44 -0.28 -16.40 16 8 H 0.06 1.62 7.78 -52.49 -0.41 1.21 16 9 C 0.23 5.38 0.81 -89.94 -0.07 5.30 16 10 O -0.58 -14.26 13.10 -35.23 -0.46 -14.72 16 11 C -0.11 -2.13 6.22 -24.58 -0.15 -2.29 16 12 C 0.10 1.67 6.48 -2.53 -0.02 1.66 16 13 N -0.60 -11.94 3.33 -171.92 -0.57 -12.51 16 14 C 0.55 10.24 7.62 -12.67 -0.10 10.15 16 15 O -0.54 -11.66 13.55 5.27 0.07 -11.59 16 16 C -0.20 -2.77 9.39 -37.81 -0.36 -3.13 16 17 C -0.07 -0.78 8.56 -36.12 -0.31 -1.09 16 18 C -0.13 -1.75 2.64 -90.20 -0.24 -1.99 16 19 H 0.14 2.42 4.84 -52.75 -0.26 2.16 16 20 C -0.15 -1.60 6.73 -25.17 -0.17 -1.77 16 21 C 0.04 0.47 7.63 37.93 0.29 0.75 16 22 O -0.38 -5.37 11.65 -35.23 -0.41 -5.78 16 23 C 0.06 0.86 7.17 37.93 0.27 1.13 16 24 C 0.09 2.14 4.95 -3.07 -0.02 2.12 16 25 H 0.27 7.45 4.07 -40.82 -0.17 7.28 16 26 H 0.37 9.27 6.91 45.56 0.31 9.58 16 27 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.13 1.42 6.99 -52.48 -0.37 1.05 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.62 7.86 -51.93 -0.41 0.21 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.48 6.66 -51.93 -0.35 1.13 16 40 H 0.07 1.90 7.81 -51.93 -0.41 1.49 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -30.37 320.04 -7.15 -37.52 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -4.99 Total: 12.93 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.24 Total: -4.85 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.14 Total: -37.04 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.80 Total: -32.09 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.37 -7.15 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329549757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.413 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds