Wall clock time and date at job start Tue Mar 31 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42907 * 110.64493 * 303.14160 * 9 7 2 11 11 C 1.55156 * 110.71910 * 180.02562 * 9 7 2 12 12 C 1.54912 * 101.58207 * 206.13536 * 11 9 7 13 13 N 1.47424 * 104.83198 * 37.00458 * 12 11 9 14 14 C 1.34775 * 125.64601 * 155.83331 * 13 12 11 15 15 O 1.21617 * 119.99804 * 180.02562 * 14 13 12 16 16 C 1.47099 * 120.00225 * 0.03114 * 14 13 12 17 17 C 1.33002 * 120.00092 * 179.97438 * 16 14 13 18 18 C 1.50695 * 120.00191 * 180.02562 * 17 16 14 19 19 H 1.09009 * 110.45532 * 0.69646 * 18 17 16 20 20 C 1.54508 * 110.51308 * 238.09705 * 18 17 16 21 21 C 1.54471 * 104.06280 * 241.35412 * 20 18 17 22 22 O 1.44430 * 104.80570 * 23.97396 * 21 20 18 23 23 C 1.44782 * 105.29388 * 319.45836 * 22 21 20 24 24 C 1.47021 * 108.70324 * 335.87596 * 13 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99675 * 59.29385 * 10 9 7 27 27 H 1.08999 * 111.00276 * 324.20402 * 11 9 7 28 28 H 1.08996 * 111.00856 * 88.06101 * 11 9 7 29 29 H 1.08998 * 110.37034 * 155.84878 * 12 11 9 30 30 H 1.09005 * 110.36873 * 278.06216 * 12 11 9 31 31 H 1.07992 * 120.00098 * 359.97438 * 16 14 13 32 32 H 1.08001 * 119.99768 * 359.97438 * 17 16 14 33 33 H 1.09007 * 110.51032 * 359.97438 * 20 18 17 34 34 H 1.09000 * 110.51446 * 122.56869 * 20 18 17 35 35 H 1.08998 * 110.37767 * 142.80557 * 21 20 18 36 36 H 1.09001 * 110.37358 * 265.03186 * 21 20 18 37 37 H 1.09007 * 110.42383 * 281.77202 * 23 22 21 38 38 H 1.08999 * 110.49102 * 159.32461 * 23 22 21 39 39 H 1.09007 * 109.88098 * 241.63350 * 24 13 12 40 40 H 1.09001 * 109.88532 * 120.47677 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3664 -2.5702 1.1195 11 6 2.2333 -3.7002 -0.0005 12 6 1.3757 -4.8035 -0.6690 13 7 0.5945 -4.0999 -1.7026 14 6 0.0734 -4.6615 -2.8114 15 8 -0.5560 -3.9815 -3.5991 16 6 0.2657 -6.0970 -3.0687 17 6 -0.2490 -6.6513 -4.1627 18 6 -0.0525 -8.1220 -4.4261 19 1 0.5200 -8.5803 -3.6195 20 6 0.6541 -8.3394 -5.7828 21 6 -0.3658 -9.1514 -6.6113 22 8 -1.6479 -8.8458 -6.0207 23 6 -1.4159 -8.8291 -4.5917 24 6 0.4791 -2.6840 -1.3239 25 1 -0.4850 0.8401 0.0004 26 1 -0.2922 -1.8626 1.1460 27 1 3.1196 -3.4800 -0.5957 28 1 2.5074 -3.9809 1.0164 29 1 2.0165 -5.5577 -1.1256 30 1 0.7117 -5.2635 0.0629 31 1 0.8248 -6.7008 -2.3694 32 1 -0.8086 -6.0475 -4.8618 33 1 0.8609 -7.3830 -6.2632 34 1 1.5759 -8.9050 -5.6470 35 1 -0.3439 -8.8364 -7.6546 36 1 -0.1548 -10.2179 -6.5333 37 1 -1.3656 -9.8461 -4.2026 38 1 -2.1994 -8.2662 -4.0845 39 1 -0.5695 -2.4227 -1.1812 40 1 0.9174 -2.0559 -2.0995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329549759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:44 Heat of formation + Delta-G solvation = -116.002611 kcal Electronic energy + Delta-G solvation = -22012.375720 eV Core-core repulsion = 18599.271076 eV Total energy + Delta-G solvation = -3413.104644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.79115 -39.26276 -37.27664 -34.44290 -34.28504 -32.17756 -31.13198 -30.07431 -29.05729 -27.83949 -25.46547 -23.65049 -22.83157 -21.90836 -20.24471 -19.54201 -18.51384 -17.28462 -16.92257 -16.39154 -16.15030 -15.46985 -15.27925 -14.85703 -14.77826 -14.24958 -13.92351 -13.23459 -13.13314 -12.91500 -12.87799 -12.40650 -12.09842 -11.96383 -11.69660 -11.57813 -11.53134 -11.41709 -11.06180 -10.95339 -10.81563 -10.66515 -10.51946 -10.20833 -10.17049 -9.41984 -9.35647 -9.27812 -8.67232 -8.32473 -7.87537 -6.29960 -4.38415 1.52049 3.21888 3.27623 3.29346 3.62585 3.68758 3.75661 4.25908 4.37184 4.44668 4.62626 4.86068 4.90242 4.97008 5.03473 5.19215 5.33041 5.38118 5.39509 5.47553 5.48532 5.67082 5.70965 5.77997 5.83337 6.02460 6.09079 6.41017 6.45547 6.49412 6.53111 6.74896 6.83517 6.98484 7.24845 7.35991 7.72538 7.99216 8.22551 8.63276 8.74985 9.29994 9.41735 10.78099 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.003302 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.664274 B = 8478.131499 C = 8676.013734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.119 4.119 12 C 0.101 3.899 13 N -0.605 5.605 14 C 0.546 3.454 15 O -0.556 6.556 16 C -0.194 4.194 17 C -0.075 4.075 18 C -0.098 4.098 19 H 0.092 0.908 20 C -0.148 4.148 21 C 0.044 3.956 22 O -0.374 6.374 23 C 0.053 3.947 24 C 0.101 3.899 25 H 0.272 0.728 26 H 0.386 0.614 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -17.018 -6.714 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.022 4.022 13 N -0.337 5.337 14 C 0.336 3.664 15 O -0.437 6.437 16 C -0.214 4.214 17 C -0.095 4.095 18 C -0.117 4.117 19 H 0.111 0.889 20 C -0.186 4.186 21 C -0.033 4.033 22 O -0.293 6.293 23 C -0.024 4.024 24 C -0.021 4.021 25 H 0.082 0.918 26 H 0.238 0.762 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.595 -17.028 -7.142 18.534 hybrid contribution 0.369 1.400 0.052 1.449 sum 1.964 -15.629 -7.090 17.274 Atomic orbital electron populations 1.69572 1.06049 1.28107 1.49796 1.25078 0.95055 0.99809 0.93326 0.86436 0.79524 0.82004 0.78800 1.21045 1.19971 1.20021 1.21491 0.93659 0.90174 1.52349 0.91559 1.19469 0.85909 0.92101 0.81720 1.86077 1.49654 1.55696 1.48142 1.22764 0.97708 0.94917 1.00259 1.22339 0.93988 0.95659 0.90183 1.48693 1.51982 1.12220 1.20827 1.18177 0.79731 0.87704 0.80753 1.90759 1.42132 1.64317 1.46513 1.22789 1.04140 0.94863 0.99648 1.23502 0.95095 0.94655 0.96202 1.21762 0.97395 0.93695 0.98836 0.88927 1.23023 0.98999 1.01835 0.94710 1.23431 0.83006 0.98533 0.98337 1.89213 1.29608 1.91945 1.18517 1.23541 0.96553 0.99584 0.82740 1.23047 1.01659 0.77825 0.99555 0.91839 0.76246 0.90539 0.90451 0.91967 0.91646 0.85920 0.85281 0.89957 0.90058 0.89004 0.92256 0.91639 0.88495 0.91764 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 10.99 55.43 0.61 -23.35 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.06 8.10 -34.44 -0.28 -14.34 16 8 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 9 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16 10 O -0.59 -14.79 13.08 -35.23 -0.46 -15.25 16 11 C -0.12 -2.33 6.22 -24.58 -0.15 -2.48 16 12 C 0.10 1.75 6.52 -2.53 -0.02 1.74 16 13 N -0.61 -12.54 3.33 -171.91 -0.57 -13.12 16 14 C 0.55 10.99 7.80 -12.67 -0.10 10.89 16 15 O -0.56 -13.29 16.55 5.26 0.09 -13.20 16 16 C -0.19 -2.82 9.08 -37.80 -0.34 -3.16 16 17 C -0.07 -0.96 8.09 -36.13 -0.29 -1.25 16 18 C -0.10 -0.91 3.44 -90.21 -0.31 -1.22 16 19 H 0.09 0.71 7.87 -51.92 -0.41 0.30 16 20 C -0.15 -1.21 6.73 -25.17 -0.17 -1.38 16 21 C 0.04 0.36 7.63 37.93 0.29 0.65 16 22 O -0.37 -4.22 11.66 -35.23 -0.41 -4.63 16 23 C 0.05 0.49 7.20 37.93 0.27 0.76 16 24 C 0.10 2.46 5.54 -3.07 -0.02 2.44 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.39 10.06 7.04 45.56 0.32 10.38 16 27 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 0.86 7.15 -51.93 -0.37 0.48 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.45 6.71 -52.49 -0.35 1.10 16 32 H 0.13 1.93 7.49 -52.49 -0.39 1.54 16 33 H 0.08 0.75 7.73 -51.92 -0.40 0.34 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.06 1.72 8.07 -51.92 -0.42 1.30 16 40 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -30.64 329.62 -7.42 -38.06 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.33 Total: 10.75 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.29 Total: 0.32 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.04 Total: -36.47 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.78 Total: -33.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.64 -7.42 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329549759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.944 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds