Wall clock time and date at job start Tue Mar 31 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48507 * 109.46847 * 85.17337 * 3 2 1 5 5 H 1.48496 * 109.47163 * 205.17289 * 3 2 1 6 6 H 1.48498 * 109.47124 * 325.17479 * 3 2 1 7 7 C 1.37879 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00073 * 173.79143 * 7 2 1 9 9 C 1.50697 * 120.00099 * 353.78744 * 7 2 1 10 10 O 1.42903 * 110.64408 * 302.33307 * 9 7 2 11 11 C 1.55157 * 110.72101 * 179.19095 * 9 7 2 12 12 C 1.54914 * 101.57908 * 206.13558 * 11 9 7 13 13 N 1.47422 * 104.83444 * 37.00851 * 12 11 9 14 14 C 1.34776 * 125.65092 * 155.83175 * 13 12 11 15 15 O 1.21607 * 120.00459 * 180.02562 * 14 13 12 16 16 C 1.47107 * 119.99869 * 0.02562 * 14 13 12 17 17 C 1.32988 * 120.00071 * 179.97438 * 16 14 13 18 18 C 1.50696 * 119.99988 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.75727 * 2.01680 * 18 17 16 20 20 C 1.55307 * 110.84974 * 125.71652 * 18 17 16 21 21 C 1.54951 * 100.94662 * 152.32332 * 20 18 17 22 22 O 1.43650 * 105.13101 * 323.55593 * 21 20 18 23 23 C 1.43236 * 109.97220 * 24.42690 * 22 21 20 24 24 C 1.47021 * 108.70424 * 335.87214 * 13 12 11 25 25 H 0.97002 * 119.99823 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99604 * 65.73870 * 10 9 7 27 27 H 1.09000 * 111.00189 * 324.20755 * 11 9 7 28 28 H 1.08996 * 111.00704 * 88.02621 * 11 9 7 29 29 H 1.09001 * 110.36610 * 155.84765 * 12 11 9 30 30 H 1.08996 * 110.36656 * 278.16542 * 12 11 9 31 31 H 1.07998 * 120.00077 * 0.02562 * 16 14 13 32 32 H 1.07998 * 120.00106 * 0.02562 * 17 16 14 33 33 H 1.09007 * 111.12452 * 270.23961 * 20 18 17 34 34 H 1.08993 * 111.12575 * 34.40180 * 20 18 17 35 35 H 1.08991 * 110.31091 * 204.63977 * 21 20 18 36 36 H 1.09000 * 110.30915 * 82.46465 * 21 20 18 37 37 H 1.09001 * 109.82628 * 238.77253 * 23 22 21 38 38 H 1.08998 * 109.82861 * 117.80386 * 23 22 21 39 39 H 1.08994 * 109.88256 * 241.64366 * 24 13 12 40 40 H 1.09002 * 109.88298 * 120.47495 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3946 2.1053 1.3952 5 1 3.5940 1.4128 -0.5955 6 1 1.5013 2.6211 -0.7995 7 6 2.0045 -1.1941 -0.0005 8 1 3.0797 -1.1968 -0.1017 9 6 1.2576 -2.4954 0.1401 10 8 0.4962 -2.5112 1.3493 11 6 2.2366 -3.6982 0.0921 12 6 1.3149 -4.8287 -0.4296 13 7 0.4275 -4.1716 -1.4064 14 6 -0.2072 -4.7825 -2.4264 15 8 -0.9176 -4.1381 -3.1739 16 6 -0.0405 -6.2291 -2.6355 17 6 -0.6671 -6.8321 -3.6416 18 6 -0.4968 -8.3141 -3.8555 19 1 0.1393 -8.7453 -3.0825 20 6 -1.8755 -9.0275 -3.9045 21 6 -1.5441 -10.2467 -4.8015 22 8 -0.6114 -9.7528 -5.7760 23 6 0.0725 -8.6046 -5.2608 24 6 0.3502 -2.7392 -1.0842 25 1 -0.4850 0.8401 0.0004 26 1 -0.2219 -1.8639 1.3703 27 1 3.0544 -3.5087 -0.6031 28 1 2.6178 -3.9316 1.0862 29 1 1.9052 -5.6054 -0.9158 30 1 0.7317 -5.2508 0.3888 31 1 0.5901 -6.8016 -1.9714 32 1 -1.2980 -6.2597 -4.3055 33 1 -2.1890 -9.3451 -2.9100 34 1 -2.6302 -8.3923 -4.3681 35 1 -2.4463 -10.6118 -5.2921 36 1 -1.0876 -11.0395 -4.2088 37 1 -0.0988 -7.7485 -5.9134 38 1 1.1406 -8.8106 -5.1917 39 1 -0.6778 -2.4684 -0.8434 40 1 0.7028 -2.1493 -1.9303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329549762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:03 Heat of formation + Delta-G solvation = -116.766334 kcal Electronic energy + Delta-G solvation = -21952.775935 eV Core-core repulsion = 18539.638174 eV Total energy + Delta-G solvation = -3413.137761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -39.81609 -39.31166 -37.32278 -34.58775 -34.30437 -32.23604 -31.17791 -30.11241 -29.15999 -27.83428 -25.47299 -23.51134 -22.68958 -22.09856 -20.39872 -19.58788 -18.58407 -17.28025 -16.96309 -16.69487 -16.00882 -15.48604 -15.06743 -14.88473 -14.77289 -14.27578 -13.82920 -13.47414 -13.21702 -12.96374 -12.90900 -12.38136 -12.22116 -11.94763 -11.90014 -11.69930 -11.55526 -11.38735 -11.12269 -11.06592 -10.84010 -10.69036 -10.47223 -10.20812 -9.82728 -9.44353 -9.37223 -9.36041 -8.70410 -8.33040 -7.89830 -6.29885 -4.37492 1.45356 3.20319 3.28311 3.30808 3.54129 3.64199 3.69191 4.25613 4.26755 4.41545 4.65600 4.85119 4.88470 4.93435 4.97473 5.17064 5.27693 5.36964 5.40546 5.44966 5.56547 5.60572 5.68709 5.77066 5.84515 5.99034 6.05770 6.36980 6.39808 6.46492 6.68986 6.72897 6.82927 6.95779 7.21908 7.34934 7.71751 8.00583 8.19854 8.63703 8.71950 9.26790 9.34757 10.78155 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003209 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.766747 B = 8722.425361 C = 8886.982374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.118 4.118 12 C 0.101 3.899 13 N -0.606 5.606 14 C 0.546 3.454 15 O -0.556 6.556 16 C -0.188 4.188 17 C -0.078 4.078 18 C -0.098 4.098 19 H 0.093 0.907 20 C -0.148 4.148 21 C 0.051 3.949 22 O -0.386 6.386 23 C 0.059 3.941 24 C 0.102 3.898 25 H 0.270 0.730 26 H 0.381 0.619 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -16.828 -4.603 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.156 4.156 12 C -0.022 4.022 13 N -0.338 5.338 14 C 0.336 3.664 15 O -0.437 6.437 16 C -0.209 4.209 17 C -0.098 4.098 18 C -0.117 4.117 19 H 0.112 0.888 20 C -0.186 4.186 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.018 4.018 24 C -0.019 4.019 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.730 -16.940 -5.086 17.702 hybrid contribution 0.016 1.520 0.195 1.533 sum -0.714 -15.420 -4.892 16.193 Atomic orbital electron populations 1.69722 1.06028 1.27875 1.49545 1.25066 0.95031 0.99791 0.93328 0.86391 0.79855 0.82508 0.78152 1.20403 1.19699 1.21056 1.21499 0.94141 0.90300 1.51650 0.91525 1.19507 0.86817 0.92179 0.80770 1.86118 1.49896 1.62995 1.40148 1.22763 0.97371 0.94549 1.00937 1.22352 0.92229 0.96165 0.91501 1.48735 1.45715 1.11629 1.27676 1.18156 0.80282 0.87518 0.80459 1.90757 1.39926 1.66964 1.46031 1.22818 1.03059 0.94569 1.00443 1.23387 0.96156 0.93900 0.96329 1.21938 0.97603 0.93504 0.98620 0.88831 1.23333 0.96925 0.96860 1.01456 1.23400 0.92884 0.95912 0.90364 1.88405 1.55853 1.45605 1.40637 1.23177 0.96541 0.88809 0.93237 1.23064 1.01629 0.76919 1.00298 0.92047 0.76892 0.90468 0.90445 0.91905 0.91647 0.85839 0.85238 0.89444 0.89700 0.89587 0.92061 0.90576 0.90937 0.91662 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.07 55.43 0.61 -23.17 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -13.98 8.10 -34.44 -0.28 -14.25 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 9 C 0.25 5.91 0.84 -89.94 -0.08 5.83 16 10 O -0.58 -14.43 13.06 -35.23 -0.46 -14.89 16 11 C -0.12 -2.29 6.22 -24.58 -0.15 -2.45 16 12 C 0.10 1.71 6.52 -2.53 -0.02 1.69 16 13 N -0.61 -12.33 3.33 -171.91 -0.57 -12.90 16 14 C 0.55 10.74 7.80 -12.66 -0.10 10.64 16 15 O -0.56 -12.98 16.55 5.27 0.09 -12.90 16 16 C -0.19 -2.66 9.08 -37.80 -0.34 -3.00 16 17 C -0.08 -0.95 8.28 -36.13 -0.30 -1.25 16 18 C -0.10 -0.90 3.32 -89.83 -0.30 -1.20 16 19 H 0.09 0.75 7.89 -51.93 -0.41 0.34 16 20 C -0.15 -1.19 6.60 -24.48 -0.16 -1.35 16 21 C 0.05 0.40 7.78 38.19 0.30 0.70 16 22 O -0.39 -4.18 11.36 -35.23 -0.40 -4.58 16 23 C 0.06 0.57 7.39 37.88 0.28 0.85 16 24 C 0.10 2.47 5.33 -3.06 -0.02 2.45 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.38 9.65 7.40 45.56 0.34 9.99 16 27 H 0.08 1.44 8.03 -51.93 -0.42 1.03 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 0.85 7.15 -51.93 -0.37 0.48 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.12 1.42 6.72 -52.49 -0.35 1.07 16 32 H 0.13 1.76 7.49 -52.49 -0.39 1.37 16 33 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.72 7.91 -51.93 -0.41 1.31 16 40 H 0.07 1.80 7.81 -51.93 -0.41 1.40 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -30.23 329.95 -7.36 -37.59 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.32 Total: 10.04 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.26 Total: 0.42 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.04 Total: -36.07 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.77 Total: -32.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.23 -7.36 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329549762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.174 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds