Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 N 1.46502 * 109.47237 * 239.99636 * 2 1 3 5 5 N 1.40438 * 126.82376 * 59.69077 * 4 2 1 6 6 C 1.30705 * 106.79408 * 179.88801 * 5 4 2 7 7 N 1.33239 * 108.94739 * 0.37695 * 6 5 4 8 8 C 1.30833 * 109.83070 * 359.75211 * 7 6 5 9 9 C 1.50696 * 125.96478 * 180.02562 * 8 7 6 10 10 S 1.81397 * 109.47090 * 269.95848 * 9 8 7 11 11 C 1.81391 * 103.00280 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47225 * 180.02562 * 11 10 9 13 13 C 1.50696 * 115.55092 * 65.33587 * 12 11 10 14 14 H 1.08007 * 119.99656 * 265.65521 * 13 12 11 15 15 C 1.37880 * 120.00448 * 85.65261 * 13 12 11 16 16 N 1.31509 * 119.99726 * 353.69222 * 15 13 12 17 17 Si 1.86803 * 119.99898 * 173.69522 * 15 13 12 18 18 H 1.48499 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47020 * 120.00149 * 17 15 13 20 20 H 1.48497 * 109.47088 * 239.99772 * 17 15 13 21 21 C 1.52998 * 117.49794 * 279.65759 * 12 11 10 22 22 C 1.53003 * 117.49854 * 210.99906 * 12 11 10 23 23 H 1.08999 * 109.46484 * 60.00271 * 1 2 3 24 24 H 1.09002 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47397 * 300.00203 * 1 2 3 26 26 H 1.09003 * 109.47129 * 120.00057 * 2 1 3 27 27 H 1.08998 * 109.46808 * 299.99704 * 3 2 1 28 28 H 1.08999 * 109.47028 * 60.00002 * 3 2 1 29 29 H 1.08996 * 109.46960 * 179.97438 * 3 2 1 30 30 H 1.08009 * 125.52749 * 180.12710 * 6 5 4 31 31 H 1.09002 * 109.47066 * 29.95848 * 9 8 7 32 32 H 1.09005 * 109.47181 * 149.96010 * 9 8 7 33 33 H 1.09001 * 109.47111 * 299.99944 * 11 10 9 34 34 H 1.08995 * 109.47457 * 59.99486 * 11 10 9 35 35 H 0.97000 * 119.99628 * 174.97807 * 16 15 13 36 36 H 1.08999 * 117.49880 * 0.02562 * 21 12 11 37 37 H 1.09006 * 117.49491 * 145.02122 * 21 12 11 38 38 H 1.08999 * 117.50138 * 214.98264 * 22 12 11 39 39 H 1.09008 * 117.49817 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7641 -0.3416 -2.5325 6 6 2.3884 -1.2162 -3.2766 7 7 3.0084 -2.0921 -2.4869 8 6 2.7942 -1.7879 -1.2325 9 6 3.3251 -2.5365 -0.0373 10 16 2.1415 -3.8241 0.4443 11 6 2.9430 -4.6009 1.8742 12 6 2.0555 -5.7279 2.4063 13 6 1.8619 -6.8973 1.4757 14 1 1.0021 -6.9314 0.8230 15 6 2.7824 -7.9237 1.4575 16 7 3.8906 -7.8255 2.1587 17 14 2.4553 -9.4536 0.4366 18 1 1.1482 -9.3173 -0.2547 19 1 3.5335 -9.6156 -0.5716 20 1 2.4248 -10.6437 1.3242 21 6 0.8798 -5.3372 3.3040 22 6 2.1094 -6.0209 3.9071 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 2.3968 -1.2293 -4.3566 31 1 4.2796 -2.9973 -0.2917 32 1 3.4657 -1.8436 0.7924 33 1 3.9072 -5.0100 1.5724 34 1 3.0929 -3.8562 2.6558 35 1 4.5036 -8.5759 2.2044 36 1 0.7383 -4.2773 3.5152 37 1 -0.0337 -5.9263 3.2217 38 1 2.0045 -7.0593 4.2213 39 1 2.7775 -5.4110 4.5153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347258946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = 103.992985 kcal Electronic energy + Delta-G solvation = -19614.970726 eV Core-core repulsion = 16686.451429 eV Total energy + Delta-G solvation = -2928.519297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.04363 -36.62462 -36.18821 -32.59798 -31.94869 -30.93904 -28.26596 -27.50302 -27.46772 -25.31290 -23.50160 -21.18576 -21.15291 -20.16034 -19.20482 -17.25377 -16.32295 -15.98024 -15.07493 -14.92593 -14.63748 -14.44285 -14.14923 -13.78015 -13.52271 -13.42856 -13.19973 -12.80598 -12.62107 -12.45591 -12.05920 -11.76583 -11.65867 -11.45823 -11.16059 -11.01657 -10.88804 -10.48260 -10.27179 -9.85119 -9.74474 -9.69815 -9.65431 -9.13963 -8.85871 -8.45607 -8.07394 -6.95079 -6.06102 -4.11247 1.37107 2.23451 2.36884 3.20810 3.29897 3.31322 3.40035 3.45157 4.11018 4.28036 4.42976 4.67141 4.68975 4.84218 4.88338 5.23211 5.28951 5.32650 5.33281 5.39716 5.51057 5.60342 5.62485 5.87677 5.89590 6.00962 6.13009 6.32603 6.37029 6.45549 6.53470 6.66809 6.74700 6.84252 7.01475 7.34487 7.43851 7.88246 8.20744 8.36309 8.91157 9.55828 11.03083 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.004643 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.792857 B = 6029.078560 C = 6774.581921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 C -0.159 4.159 4 N -0.364 5.364 5 N -0.321 5.321 6 C 0.195 3.805 7 N -0.531 5.531 8 C 0.306 3.694 9 C -0.038 4.038 10 S -0.205 6.205 11 C -0.030 4.030 12 C 0.054 3.946 13 C -0.485 4.485 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.881 5.881 17 Si 0.888 3.112 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.285 1.285 21 C -0.205 4.205 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.215 0.785 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 15.946 -1.721 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 C -0.217 4.217 4 N -0.157 5.157 5 N -0.149 5.149 6 C -0.108 4.108 7 N -0.259 5.259 8 C 0.030 3.970 9 C -0.188 4.188 10 S 0.021 5.979 11 C -0.178 4.178 12 C 0.052 3.948 13 C -0.523 4.523 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.518 5.518 17 Si 0.716 3.284 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.243 4.243 22 C -0.186 4.186 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.092 16.033 -2.568 16.529 hybrid contribution 1.209 -0.678 0.251 1.409 sum -1.883 15.355 -2.316 15.643 Atomic orbital electron populations 1.22102 0.92662 1.03762 1.03164 1.21460 0.96341 0.93737 0.83688 1.22131 1.01643 0.94427 1.03513 1.50501 1.37612 1.21699 1.05845 1.77908 1.25072 1.25146 0.86763 1.25915 0.94075 0.89663 1.01121 1.70498 1.27665 1.28373 0.99396 1.23326 0.92111 0.87183 0.94409 1.21777 1.03497 0.99740 0.93822 1.87296 1.28845 1.38291 1.43447 1.23210 1.02617 0.98477 0.93533 1.18445 0.93297 0.93092 0.89927 1.20416 1.08047 1.02682 1.21110 0.91922 1.24926 0.94258 0.98403 0.95383 1.70007 1.09794 1.30694 1.41335 0.86592 0.78577 0.83011 0.80268 1.19589 1.20925 1.21078 1.23031 0.93894 0.98220 1.09135 1.22578 0.98696 0.99776 0.97532 0.91348 0.91254 0.90526 0.87505 0.91127 0.90433 0.92189 0.76835 0.86823 0.88990 0.89373 0.93184 0.93090 0.91442 0.90243 0.89717 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.47 37.16 0.35 -1.26 16 2 C 0.15 1.62 3.68 -67.93 -0.25 1.37 16 3 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 4 N -0.36 -5.13 3.28 -51.87 -0.17 -5.30 16 5 N -0.32 -4.71 12.59 29.29 0.37 -4.34 16 6 C 0.20 2.81 13.03 -91.82 -1.20 1.61 16 7 N -0.53 -9.02 11.19 -11.97 -0.13 -9.15 16 8 C 0.31 4.85 7.24 -155.69 -1.13 3.73 16 9 C -0.04 -0.58 6.10 36.00 0.22 -0.36 16 10 S -0.21 -3.95 21.41 -107.50 -2.30 -6.25 16 11 C -0.03 -0.62 5.80 37.16 0.22 -0.41 16 12 C 0.05 1.27 1.34 -155.66 -0.21 1.06 16 13 C -0.48 -12.89 8.49 -34.44 -0.29 -13.19 16 14 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 15 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 16 N -0.88 -24.18 12.90 55.43 0.71 -23.46 16 17 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.21 -4.27 9.96 -26.69 -0.27 -4.54 16 22 C -0.15 -3.23 9.40 -26.69 -0.25 -3.48 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.11 1.07 6.74 -51.93 -0.35 0.72 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.22 2.19 8.06 -52.48 -0.42 1.77 16 31 H 0.11 1.74 8.14 -51.92 -0.42 1.32 16 32 H 0.09 1.12 7.13 -51.92 -0.37 0.75 16 33 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.05 0.92 8.09 -51.93 -0.42 0.49 16 35 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 39 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -30.15 345.49 -10.07 -40.22 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.18 Total: 1.56 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.55 Total: -14.63 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.78 Total: -42.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.30 Total: -6.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.15 -10.07 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347258946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.216 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds