Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 O 1.45208 * 109.47122 * 89.71259 * 7 6 4 9 9 C 1.34225 * 117.00267 * 179.97438 * 8 7 6 10 10 O 1.20826 * 119.99780 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46918 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46918 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00166 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99924 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00299 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47137 * 60.00117 * 19 17 15 21 21 H 1.48500 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46960 * 300.00230 * 19 17 15 23 23 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 25 25 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 26 26 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 27 27 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 28 28 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 29 29 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 30 30 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 31 31 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 32 32 H 1.09000 * 109.46720 * 300.00012 * 11 9 8 33 33 H 1.08997 * 109.47037 * 59.99919 * 11 9 8 34 34 H 1.08997 * 109.46998 * 300.00222 * 12 11 9 35 35 H 1.08999 * 109.46871 * 60.00202 * 12 11 9 36 36 H 1.08997 * 109.47742 * 300.00103 * 13 12 11 37 37 H 1.08999 * 109.46910 * 60.00562 * 13 12 11 38 38 H 1.09000 * 109.47373 * 299.99891 * 14 13 12 39 39 H 1.08999 * 109.46871 * 60.00539 * 14 13 12 40 40 H 0.96999 * 120.00090 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 8 5.1849 -1.8327 1.3736 9 6 6.2651 -2.6089 1.5536 10 8 6.8642 -3.0415 0.5976 11 6 6.7306 -2.9408 2.9479 12 6 7.9717 -3.8324 2.8725 13 6 8.4447 -4.1688 4.2881 14 6 9.6854 -5.0610 4.2127 15 6 10.1509 -5.3928 5.6071 16 1 9.6152 -5.0065 6.4615 17 6 11.2601 -6.1906 5.7919 18 7 11.9117 -6.6623 4.7514 19 14 11.8376 -6.6014 7.5203 20 1 10.7571 -7.3157 8.2466 21 1 13.0418 -7.4674 7.4471 22 1 12.1734 -5.3473 8.2412 23 8 2.2872 -1.0890 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5141 27 1 5.0476 1.7915 -1.0277 28 1 4.5130 2.5023 0.5141 29 1 5.5820 1.0792 0.5134 30 1 4.5703 -2.4913 -0.5079 31 1 5.6088 -1.0457 -0.5113 32 1 6.9765 -2.0204 3.4775 33 1 5.9375 -3.4656 3.4804 34 1 7.7262 -4.7527 2.3427 35 1 8.7646 -3.3071 2.3401 36 1 8.6903 -3.2483 4.8176 37 1 7.6519 -4.6940 4.8209 38 1 9.4394 -5.9815 3.6835 39 1 10.4783 -4.5362 3.6799 40 1 12.6923 -7.2232 4.8815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347443510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = -93.798059 kcal Electronic energy + Delta-G solvation = -20723.486326 eV Core-core repulsion = 17311.344544 eV Total energy + Delta-G solvation = -3412.141782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.75869 -40.56149 -36.94693 -35.57150 -35.01822 -33.58683 -32.69852 -30.43912 -29.82284 -29.07330 -26.04179 -24.77893 -22.75970 -22.15996 -21.04942 -20.67281 -20.06025 -17.81614 -17.31231 -17.01240 -16.82870 -16.19339 -16.06202 -15.14059 -14.55175 -14.53261 -14.35928 -13.78382 -13.56102 -13.49989 -13.21821 -13.06436 -12.94638 -12.64337 -12.34588 -12.29966 -11.76234 -11.69429 -11.27050 -11.12828 -11.01232 -10.83225 -10.63987 -10.60559 -10.49860 -10.47431 -9.66854 -9.32077 -9.07771 -8.99760 -8.32354 -5.97266 -3.99993 0.82625 2.02883 2.17134 2.23659 2.82673 3.34534 3.38967 3.41235 3.54852 4.20246 4.37985 4.47464 4.54852 4.66281 4.84437 4.89024 4.93987 5.06182 5.21174 5.22693 5.23379 5.30163 5.34316 5.38121 5.59687 5.66820 5.66974 5.95686 6.02355 6.14027 6.24611 6.43853 6.73956 6.91879 7.14105 7.31841 7.67876 7.70700 7.85387 8.03183 8.44857 9.07277 9.63813 11.13955 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.002216 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.831568 B =12634.900226 C =12763.063194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.204 3.796 3 N -0.485 5.485 4 C 0.024 3.976 5 C -0.078 4.078 6 C -0.064 4.064 7 C 0.155 3.845 8 O -0.358 6.358 9 C 0.463 3.537 10 O -0.502 6.502 11 C -0.111 4.111 12 C -0.109 4.109 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 O -0.194 6.194 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.659 15.131 -11.075 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.003 4.003 3 N -0.216 5.216 4 C -0.096 4.096 5 C -0.135 4.135 6 C -0.116 4.116 7 C 0.081 3.919 8 O -0.276 6.276 9 C 0.306 3.694 10 O -0.388 6.388 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 O -0.081 6.081 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.583 15.458 -11.448 28.911 hybrid contribution 0.575 -1.010 0.768 1.393 sum -21.008 14.448 -10.681 27.643 Atomic orbital electron populations 1.20319 0.80929 1.05300 1.05031 1.26366 0.96537 0.78563 0.98810 1.70428 1.01471 1.30236 1.19483 1.21636 0.93633 0.91899 1.02439 1.20235 0.91766 0.98286 1.03252 1.22476 0.83193 0.94289 1.11642 1.20910 0.89990 0.98600 0.82370 1.86615 1.46030 1.64678 1.30289 1.24302 0.76835 0.74417 0.93802 1.90691 1.54835 1.49882 1.43392 1.21648 1.00827 1.03208 0.89140 1.21594 0.94263 0.98659 1.00098 1.21654 1.00036 1.00250 0.92844 1.19094 0.91362 0.94265 0.96972 1.21230 1.11647 1.30471 0.92642 0.92744 1.25043 0.96696 0.96055 0.96782 1.69961 1.19559 1.34579 1.29354 0.86657 0.78099 0.78322 0.84895 1.20270 1.21322 1.20265 1.84384 1.16331 1.37631 1.69789 0.88552 0.87920 0.89105 0.90243 0.90013 0.90257 0.89177 0.87513 0.87690 0.87748 0.91474 0.91438 0.93152 0.93185 0.96539 0.96525 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.20 1.98 8.34 -12.95 -0.11 1.87 16 3 N -0.49 -5.58 11.29 -7.36 -0.08 -5.66 16 4 C 0.02 0.27 7.11 -82.81 -0.59 -0.32 16 5 C -0.08 -0.63 10.05 36.01 0.36 -0.27 16 6 C -0.06 -0.72 7.03 -35.69 -0.25 -0.97 16 7 C 0.16 1.66 5.62 36.00 0.20 1.86 16 8 O -0.36 -4.46 10.20 -39.25 -0.40 -4.86 16 9 C 0.46 6.36 7.96 36.01 0.29 6.65 16 10 O -0.50 -8.22 15.73 -18.75 -0.29 -8.52 16 11 C -0.11 -1.44 5.81 -27.88 -0.16 -1.60 16 12 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 13 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 O -0.19 -2.20 10.78 5.36 0.06 -2.14 16 24 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 30 H 0.09 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.11 0.97 7.79 -51.93 -0.40 0.57 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -34.53 349.29 -6.69 -41.22 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -6.26 Total: -5.32 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.69 Total: -10.21 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.65 Total: -32.17 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.64 Total: -15.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.53 -6.69 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347443510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.575 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds